Human Gene CCL2 (uc002hhy.3)
  Description: Homo sapiens chemokine (C-C motif) ligand 2 (CCL2), mRNA.
RefSeq Summary (NM_002982): This gene is one of several cytokine genes clustered on the q-arm of chromosome 17. Chemokines are a superfamily of secreted proteins involved in immunoregulatory and inflammatory processes. The superfamily is divided into four subfamilies based on the arrangement of N-terminal cysteine residues of the mature peptide. This chemokine is a member of the CC subfamily which is characterized by two adjacent cysteine residues. This cytokine displays chemotactic activity for monocytes and basophils but not for neutrophils or eosinophils. It has been implicated in the pathogenesis of diseases characterized by monocytic infiltrates, like psoriasis, rheumatoid arthritis and atherosclerosis. It binds to chemokine receptors CCR2 and CCR4. [provided by RefSeq, Jul 2013].
Transcript (Including UTRs)
   Position: hg19 chr17:32,582,296-32,584,220 Size: 1,925 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr17:32,582,369-32,583,846 Size: 1,478 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:32,582,296-32,584,220)mRNA (may differ from genome)Protein (99 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CCL2_HUMAN
DESCRIPTION: RecName: Full=C-C motif chemokine 2; AltName: Full=HC11; AltName: Full=Monocyte chemoattractant protein 1; AltName: Full=Monocyte chemotactic and activating factor; Short=MCAF; AltName: Full=Monocyte chemotactic protein 1; Short=MCP-1; AltName: Full=Monocyte secretory protein JE; AltName: Full=Small-inducible cytokine A2; Flags: Precursor;
FUNCTION: Chemotactic factor that attracts monocytes and basophils but not neutrophils or eosinophils. Augments monocyte anti-tumor activity. Has been implicated in the pathogenesis of diseases characterized by monocytic infiltrates, like psoriasis, rheumatoid arthritis or atherosclerosis. May be involved in the recruitment of monocytes into the arterial wall during the disease process of atherosclerosis.
SUBUNIT: Monomer or homodimer; in equilibrium. Binds to CCR2 and CCR4. Is tethered on endothelial cells by glycosaminoglycan (GAG) side chains of proteoglycans.
SUBCELLULAR LOCATION: Secreted.
PTM: Processing at the N-terminus can regulate receptor and target cell selectivity. Deletion of the N-terminal residue converts it from an activator of basophil to an eosinophil chemoattractant.
POLYMORPHISM: Genetic variations in CCL2 determine Mycobacterium tuberculosis susceptibility [MIM:607948].
SIMILARITY: Belongs to the intercrine beta (chemokine CC) family.
WEB RESOURCE: Name=Wikipedia; Note=CCL2 entry; URL="http://en.wikipedia.org/wiki/CCL2";
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/scya2/";

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): CCL2
CDC HuGE Published Literature: CCL2
Positive Disease Associations: asthma , Asthma. asthma severity , Asthma| , atherosclerosis, carotid , bipolar disorder , bone density , carpal-tunnel syndrome , Chagas disease , coronary artery disease , Crohn Disease , Crohn's disease , Dementia| , diabetes, type 2 , diabetes, type 2 metabolic syndrome , Edema rosiglitazone or pioglitazone , glucose insulin , hepatitis B, chronic , hepatitis C, chronic , HIV , intima-media thickness , myocardial infarct , nephropathy in other diseases , pancreatitis, chronic , renal tubular damage , sclerosis, systemic , systemic lupus erythematosus , tuberculosis
Related Studies:
  1. asthma
    Szalai, C. et al. 2001, Polymorphism in the gene regulatory region of MCP-1 is associated with asthma susceptibility and severity., The Journal of allergy and clinical immunology. 2001 Sep;108(3):375-81. [PubMed 11544456]
    In this cohort of children, there are associations between carrying G at -2518 of the MCP-1 gene regulatory region and the presence of asthma as well as between asthma severity and homozygosity for the G allele. In asthmatic children, the MCP-1 -2518G polymorphism correlated with increased eosinophil levels. This variant of MCP-1 might belong to the predictor gene set for asthma.
  2. Asthma. asthma severity
    Szalai C 2001, Polymorphism in the gene regulatory region of MCP-1 is associated with asthma susceptibility and severity., The Journal of allergy and clinical immunology. 2001 Sep;108(3):375-81. [PubMed 11544456]
    In this cohort of children, there are associations between carrying G at -2518 of the MCP-1 gene regulatory region and the presence of asthma as well as between asthma severity and homozygosity for the G allele. In asthmatic children, the MCP-1 -2518G polymorphism correlated with increased eosinophil levels. This variant of MCP-1 might belong to the predictor gene set for asthma.
  3. Asthma. asthma severity
    Szalai C 2001, Polymorphism in the gene regulatory region of MCP-1 is associated with asthma susceptibility and severity., The Journal of allergy and clinical immunology. 20. [PubMed 11544456]
    In this cohort of children, there are associations between carrying G at -2518 of the MCP-1 gene regulatory region and the presence of asthma as well as between asthma severity and homozygosity for the G allele. In asthmatic children, the MCP-1 -2518G polymorphism correlated with increased eosinophil levels. This variant of MCP-1 might belong to the predictor gene set for asthma.
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: CCL2
Diseases sorted by gene-association score: neural tube defects* (288), hiv-1* (206), atherosclerosis (47), proliferative glomerulonephritis (26), arthritis (24), rheumatoid arthritis (22), xanthogranulomatous pyelonephritis (18), herpes simplex virus keratitis (18), vangl1-related neural tube defect (18), anthracosis (17), crescentic glomerulonephritis (17), urinary tract obstruction (17), peritonitis (17), acute cystitis (15), arteriosclerosis (14), diabetic macular edema (13), chagas disease (13), psoriasis (13), trypanosomiasis (12), retinal vasculitis (12), mesangial proliferative glomerulonephritis (11), demyelinating disease (11), kawasaki disease (11), renal fibrosis (10), denture stomatitis (10), verruciform xanthoma of skin (10), interstitial lung disease (10), diabetic angiopathy (10), erdheim-chester disease (10), extrapulmonary tuberculosis (9), cerebral aneurysms (9), glomerulonephritis (9), uveitis (9), encephalitis (9), scleritis (9), pulmonary alveolar proteinosis (9), nephrosclerosis (9), endometriosis (9), temporal arteritis (9), pneumoconiosis (8), retinal vein occlusion (8), severe acute respiratory syndrome (8), viral encephalitis (8), mast-cell leukemia (8), pneumonia (8), abdominal aortic aneurysm (8), viral meningitis (8), tuberculous meningitis (8), pulmonary sarcoidosis (8), hydronephrosis (8), carotid artery disease (7), idiopathic interstitial pneumonia (7), hyperhomocysteinemia (7), alcoholic hepatitis (7), vascular disease (7), post-thrombotic syndrome (7), acute proliferative glomerulonephritis (7), lipoid nephrosis (7), pleural tuberculosis (7), autoinflammation, lipodystrophy, and dermatosis syndrome (7), pleurisy (7), retinitis pigmentosa 73 (7), pyelonephritis (7), endocervicitis (7), microvascular complications of diabetes 1 (7), pelvic inflammatory disease (7), complex regional pain syndrome (6), silicosis (6), anterior uveitis (6), dengue shock syndrome (6), chorioamnionitis (6), vitreoretinopathy, neovascular inflammatory (6), peripheral artery disease (6), purulent labyrinthitis (6), leptospirosis (6), stachybotrys chartarum (6), neuritis (6), keratitis (6), transient cerebral ischemia (6), bone cancer (6), nonspecific interstitial pneumonia (6), israeli tick typhus (6), radiculopathy (5), systemic lupus erythematosus (5), pulmonary fibrosis, idiopathic (5), stromal keratitis (5), retinal vascular occlusion (5), primary cutaneous amyloidosis (5), malaria (5), ischemic heart disease (5), extrinsic allergic alveolitis (5), sarcoidosis 1 (5), ureteral disease (4), macular holes (4), pulmonary fibrosis (4), coronary artery aneurysm (4), lung disease (4), obesity (4), macular retinal edema (4), extrinsic cardiomyopathy (4), vasculitis (4), periodontitis (3), eye disease (3), relapsing-remitting multiple sclerosis (3), meningitis (3), cystitis (3), artery disease (2), central nervous system disease (2), macular degeneration, age-related, 1 (2), multiple sclerosis, disease progression, modifier of (2), diabetes mellitus, noninsulin-dependent (2), urinary system disease (1), myocardial infarction (1), endometrial stromal sarcoma (1), overnutrition (1), respiratory system disease (1), bone inflammation disease (1), acquired metabolic disease (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 65.63 RPKM in Adipose - Visceral (Omentum)
Total median expression: 793.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -19.6773-0.269 Picture PostScript Text
3' UTR -68.46374-0.183 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000827 - Chemokine_CC_CS
IPR001811 - Chemokine_IL8-like_dom

Pfam Domains:
PF00048 - Small cytokines (intecrine/chemokine), interleukin-8 like

SCOP Domains:
54117 - Interleukin 8-like chemokines

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1DOK - X-ray MuPIT 1DOL - X-ray MuPIT 1DOM - NMR MuPIT 1DON - NMR MuPIT 1MCA - Model 1ML0 - X-ray 2BDN - X-ray 2NZ1 - X-ray MuPIT 3IFD - X-ray 4DN4 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P13500
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
      
      
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004672 protein kinase activity
GO:0005102 receptor binding
GO:0005125 cytokine activity
GO:0005515 protein binding
GO:0008009 chemokine activity
GO:0031727 CCR2 chemokine receptor binding

Biological Process:
GO:0000165 MAPK cascade
GO:0001525 angiogenesis
GO:0002548 monocyte chemotaxis
GO:0006468 protein phosphorylation
GO:0006935 chemotaxis
GO:0006954 inflammatory response
GO:0006955 immune response
GO:0006959 humoral immune response
GO:0007010 cytoskeleton organization
GO:0007155 cell adhesion
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0007259 JAK-STAT cascade
GO:0008360 regulation of cell shape
GO:0009617 response to bacterium
GO:0009887 animal organ morphogenesis
GO:0010469 regulation of receptor activity
GO:0019079 viral genome replication
GO:0019221 cytokine-mediated signaling pathway
GO:0019725 cellular homeostasis
GO:0030593 neutrophil chemotaxis
GO:0031663 lipopolysaccharide-mediated signaling pathway
GO:0034351 negative regulation of glial cell apoptotic process
GO:0035684 helper T cell extravasation
GO:0036499 PERK-mediated unfolded protein response
GO:0043491 protein kinase B signaling
GO:0043524 negative regulation of neuron apoptotic process
GO:0043547 positive regulation of GTPase activity
GO:0043615 astrocyte cell migration
GO:0044344 cellular response to fibroblast growth factor stimulus
GO:0048246 macrophage chemotaxis
GO:0050870 positive regulation of T cell activation
GO:0051770 positive regulation of nitric-oxide synthase biosynthetic process
GO:0070098 chemokine-mediated signaling pathway
GO:0070374 positive regulation of ERK1 and ERK2 cascade
GO:0071222 cellular response to lipopolysaccharide
GO:0071346 cellular response to interferon-gamma
GO:0071347 cellular response to interleukin-1
GO:0071356 cellular response to tumor necrosis factor
GO:0071407 cellular response to organic cyclic compound
GO:0090280 positive regulation of calcium ion import
GO:1905563 negative regulation of vascular endothelial cell proliferation
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle
GO:2000353 positive regulation of endothelial cell apoptotic process
GO:2000427 positive regulation of apoptotic cell clearance
GO:2000502 negative regulation of natural killer cell chemotaxis

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005622 intracellular
GO:0005623 cell


-  Descriptions from all associated GenBank mRNAs
  LF209225 - JP 2014500723-A/16728: Polycomb-Associated Non-Coding RNAs.
HW061215 - JP 2012529430-A/90: METHODS FOR TREATING CHRONIC KIDNEY DISEASE.
JB252023 - Sequence 90 from Patent EP2440214.
LP764922 - Sequence 90 from Patent EP3276004.
HW286096 - JP 2013143917-A/2: CURATIVE OR PREVENTIVE AGENT FOR FIBROSIS.
LX148401 - JP 2017079741-A/2: CURATIVE OR PREVENTIVE AGENT FOR FIBROSIS.
LP880256 - Sequence 60 from Patent WO2017181111.
LP882087 - Sequence 29 from Patent WO2017181079.
LQ878889 - Sequence 4 from Patent WO2018154075.
M24545 - Human monocyte chemotactic and activating factor (MCAF) mRNA, complete cds.
AK311308 - Homo sapiens cDNA, FLJ18350.
AK311960 - Homo sapiens cDNA, FLJ92229, Homo sapiens chemokine (C-C motif) ligand 2 (CCL2), mRNA.
FW339992 - Screening.
BC009716 - Homo sapiens chemokine (C-C motif) ligand 2, mRNA (cDNA clone MGC:9434 IMAGE:3901489), complete cds.
X14768 - H.sapiens mRNA for monocyte chemoattractant protein 1 (MCP-1).
S71513 - monocyte chemoattractant protein-1 [human, mRNA, 739 nt].
M28226 - Human JE gene encoding a monocyte secretory protein mRNA, complete cds.
S69738 - MCP-1=monocyte chemotactic protein [human, aortic endothelial cells, mRNA, 661 nt].
DQ893725 - Synthetic construct Homo sapiens clone IMAGE:100008185; FLH163964.01L; RZPDo839B04161D chemokine (C-C motif) ligand 2 (CCL2) gene, encodes complete protein.
EU176175 - Synthetic construct Homo sapiens clone IMAGE:100006330; FLH163971.01X; RZPDo839D02250D chemokine (C-C motif) ligand 2 (CCL2) gene, encodes complete protein.
JD383231 - Sequence 364255 from Patent EP1572962.
KJ892101 - Synthetic construct Homo sapiens clone ccsbBroadEn_01495 CCL2 gene, encodes complete protein.
KJ905313 - Synthetic construct Homo sapiens clone ccsbBroadEn_14837 CCL2 gene, encodes complete protein.
AB463485 - Synthetic construct DNA, clone: pF1KB6743, Homo sapiens CCL2 gene for chemokine (C-C motif) ligand 2, without stop codon, in Flexi system.
BT007329 - Homo sapiens chemokine (C-C motif) ligand 2 mRNA, complete cds.
E02542 - cDNA encoding human monocyte chemotactic factor.
E03044 - cDNA encoding human macrophage chemotaxis factor precursor.
M26683 - Human interferon gamma treatment inducible mRNA.
LF326991 - JP 2014500723-A/134494: Polycomb-Associated Non-Coding RNAs.
LF326993 - JP 2014500723-A/134496: Polycomb-Associated Non-Coding RNAs.
JD095969 - Sequence 76993 from Patent EP1572962.
LF326994 - JP 2014500723-A/134497: Polycomb-Associated Non-Coding RNAs.
JD297657 - Sequence 278681 from Patent EP1572962.
LF326995 - JP 2014500723-A/134498: Polycomb-Associated Non-Coding RNAs.
MA562568 - JP 2018138019-A/134494: Polycomb-Associated Non-Coding RNAs.
MA562570 - JP 2018138019-A/134496: Polycomb-Associated Non-Coding RNAs.
MA562571 - JP 2018138019-A/134497: Polycomb-Associated Non-Coding RNAs.
MA562572 - JP 2018138019-A/134498: Polycomb-Associated Non-Coding RNAs.
MA444802 - JP 2018138019-A/16728: Polycomb-Associated Non-Coding RNAs.
MB143804 - JP 2019515670-A/15: METHODS FOR MONITORING AND TREATING CANCER.
MB423127 - JP 2019521641-A/14: METHODS FOR MONITORING AND TREATING CANCER.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04060 - Cytokine-cytokine receptor interaction
hsa04062 - Chemokine signaling pathway
hsa04621 - NOD-like receptor signaling pathway
hsa05142 - Chagas disease

BioCarta from NCI Cancer Genome Anatomy Project
h_Ccr5Pathway - Pertussis toxin-insensitive CCR5 Signaling in Macrophage
h_mspPathway - Msp/Ron Receptor Signaling Pathway
h_LDLpathway - Low-density lipoprotein (LDL) pathway during atherogenesis

Reactome (by CSHL, EBI, and GO)

Protein P13500 (Reactome details) participates in the following event(s):

R-HSA-380994 ATF4 activates genes
R-HSA-6783783 Interleukin-10 signaling
R-HSA-6785807 Interleukin-4 and 13 signaling
R-HSA-381042 PERK regulates gene expression
R-HSA-449147 Signaling by Interleukins
R-HSA-381119 Unfolded Protein Response (UPR)
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-392499 Metabolism of proteins
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B2R4V3, CCL2_HUMAN, MCP1, NM_002982, NP_002973, P13500, Q9UDF3, SCYA2
UCSC ID: uc002hhy.3
RefSeq Accession: NM_002982
Protein: P13500 (aka CCL2_HUMAN)
CCDS: CCDS11277.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_002982.3
exon count: 3CDS single in 3' UTR: no RNA size: 760
ORF size: 300CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 800.00frame shift in genome: no % Coverage: 98.29
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.