Human Gene RHEB (uc003wkh.1)
  Description: Homo sapiens Ras homolog enriched in brain (RHEB), mRNA.
RefSeq Summary (NM_005614): This gene is a member of the small GTPase superfamily and encodes a lipid-anchored, cell membrane protein with five repeats of the RAS-related GTP-binding region. This protein is vital in regulation of growth and cell cycle progression due to its role in the insulin/TOR/S6K signaling pathway. The protein has GTPase activity and shuttles between a GDP-bound form and a GTP-bound form, and farnesylation of the protein is required for this activity. Three pseudogenes have been mapped, two on chromosome 10 and one on chromosome 22. [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr7:151,163,098-151,217,010 Size: 53,913 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr7:151,164,205-151,216,597 Size: 52,393 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:151,163,098-151,217,010)mRNA (may differ from genome)Protein (184 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RHEB_HUMAN
DESCRIPTION: RecName: Full=GTP-binding protein Rheb; AltName: Full=Ras homolog enriched in brain; Flags: Precursor;
FUNCTION: Stimulates the phosphorylation of S6K1 and EIF4EBP1 through activation of mTORC1 signaling. Activates the protein kinase activity of mTORC1. Has low intrinsic GTPase activity.
ENZYME REGULATION: Alternates between an inactive form bound to GDP and an active form bound to GTP. Inactivated by TSC1-TSC2 via the GTPase activating protein (GAP) domain of TSC2.
SUBUNIT: Binds to mTORC1 in a guanyl nucleotide-independent manner. Interacts directly with MTOR, MLST8 and RPTOR. Interacts with TSC2.
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side (Potential).
TISSUE SPECIFICITY: Ubiquitous. Highest levels observed in skeletal and cardiac muscle.
PTM: Farnesylation is important for efficiently activating mTORC1- mediated signaling.
PTM: Phosphorylation by MAPKAPK5 impairs GTP-binding and inactivation (By similarity).
MISCELLANEOUS: The conserved catalytic Gln-64 found in other Ras- like GTPases seems not to be involved in GTP hydrolysis in RHEB.
SIMILARITY: Belongs to the small GTPase superfamily. Rheb family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RHEB
CDC HuGE Published Literature: RHEB

-  MalaCards Disease Associations
  MalaCards Gene Search: RHEB
Diseases sorted by gene-association score: tuberous sclerosis (6)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.68 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 1424.92 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -209.52413-0.507 Picture PostScript Text
3' UTR -336.851107-0.304 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005225 - Small_GTP-bd_dom
IPR001806 - Small_GTPase
IPR020849 - Small_GTPase_Ras

Pfam Domains:
PF00025 - ADP-ribosylation factor family
PF00071 - Ras family
PF01926 - 50S ribosome-binding GTPase
PF08477 - Ras of Complex, Roc, domain of DAPkinase

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1XTQ - X-ray MuPIT 1XTR - X-ray MuPIT 1XTS - X-ray MuPIT 3SEA - X-ray MuPIT 3T5G - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q15382
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  EnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000287 magnesium ion binding
GO:0003924 GTPase activity
GO:0005515 protein binding
GO:0005525 GTP binding
GO:0019003 GDP binding
GO:0019901 protein kinase binding
GO:0046872 metal ion binding

Biological Process:
GO:0007050 cell cycle arrest
GO:0007165 signal transduction
GO:0016241 regulation of macroautophagy
GO:0032006 regulation of TOR signaling
GO:0032008 positive regulation of TOR signaling
GO:0048714 positive regulation of oligodendrocyte differentiation
GO:2000074 regulation of type B pancreatic cell development

Cellular Component:
GO:0000139 Golgi membrane
GO:0005681 spliceosomal complex
GO:0005737 cytoplasm
GO:0005765 lysosomal membrane
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AK125446 - Homo sapiens cDNA FLJ43457 fis, clone OCBBF2035226, highly similar to GTP-binding protein Rheb.
JD024395 - Sequence 5419 from Patent EP1572962.
JD035550 - Sequence 16574 from Patent EP1572962.
BC066307 - Homo sapiens Ras homolog enriched in brain, mRNA (cDNA clone MGC:87123 IMAGE:5274556), complete cds.
BC016155 - Homo sapiens Ras homolog enriched in brain, mRNA (cDNA clone MGC:1391 IMAGE:3528583), complete cds.
D78132 - Homo sapiens mRNA for ras-related GTP-binding protein, complete cds.
Z29677 - H.sapiens mRNA for ras-related GTP-binding protein.
BC107705 - Homo sapiens Ras homolog enriched in brain, mRNA (cDNA clone MGC:111559 IMAGE:6615350), complete cds.
AF148645 - Homo sapiens ras-related GTP-binding protein mRNA, complete cds.
JD284467 - Sequence 265491 from Patent EP1572962.
AK289370 - Homo sapiens cDNA FLJ77896 complete cds, highly similar to Homo sapiens Ras homolog enriched in brain (RHEB), mRNA.
JD359045 - Sequence 340069 from Patent EP1572962.
JD177851 - Sequence 158875 from Patent EP1572962.
AF493921 - Homo sapiens Ras family small GTP binding protein RHEB2 (RHEB2) mRNA, complete cds.
CU688134 - Synthetic construct Homo sapiens gateway clone IMAGE:100021056 5' read RHEB mRNA.
KJ892004 - Synthetic construct Homo sapiens clone ccsbBroadEn_01398 RHEB gene, encodes complete protein.
KJ897470 - Synthetic construct Homo sapiens clone ccsbBroadEn_06864 RHEB gene, encodes complete protein.
BT006958 - Homo sapiens Ras homolog enriched in brain 2 mRNA, complete cds.
AB528681 - Synthetic construct DNA, clone: pF1KB6895, Homo sapiens RHEB gene for Ras homolog, without stop codon, in Flexi system.
JD436018 - Sequence 417042 from Patent EP1572962.
JD406119 - Sequence 387143 from Patent EP1572962.
JD142363 - Sequence 123387 from Patent EP1572962.
JD416433 - Sequence 397457 from Patent EP1572962.
JD227891 - Sequence 208915 from Patent EP1572962.
JD472125 - Sequence 453149 from Patent EP1572962.
JD485617 - Sequence 466641 from Patent EP1572962.
JD527130 - Sequence 508154 from Patent EP1572962.
JD264970 - Sequence 245994 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04150 - mTOR signaling pathway
hsa04910 - Insulin signaling pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_mTORPathway - mTOR Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q15382 (Reactome details) participates in the following event(s):

R-HSA-165680 Formation of active mTORC1 complex
R-HSA-165195 GTP loading by Rheb
R-HSA-380979 RHEB in mTORC1:RHEB:GTP hydrolyses GTP
R-HSA-447074 AMPK phosphorylates Raptor in the mTORC1 complex
R-HSA-5672843 AKT1S1 (PRAS40) binds mTORC1
R-HSA-5672017 Rheb in the mTORC1 complex hydrolyses GTP
R-HSA-5672817 Active mTORC1 binds the ULK1 complex
R-HSA-5675790 mTORC1 dissociates from ULK complex
R-HSA-5672824 Phosphorylated AKT1S1:mTORC1 binds YWHAB
R-HSA-377186 Activated Akt1 phosphorylates AKT1S1 (PRAS40)
R-HSA-165692 Phosphorylation of 4E-BP1 by activated mTORC1
R-HSA-165718 mTORC1 phosphorylation of RPS6KB1 (S6K)
R-HSA-5672010 Active mTORC1 phosphorylates ULK1
R-HSA-5673768 p-AMPK:AMP phosphorylates Raptor in the mTORC1 complex
R-HSA-8944454 mTORC1 phosphorylates MAF1
R-HSA-5672828 mTORC1 phosphorylates AKT1S1
R-HSA-165159 mTOR signalling
R-HSA-380972 Energy dependent regulation of mTOR by LKB1-AMPK
R-HSA-5628897 TP53 Regulates Metabolic Genes
R-HSA-1632852 Macroautophagy
R-HSA-162582 Signal Transduction
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-166208 mTORC1-mediated signalling
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-8943724 Regulation of PTEN gene transcription
R-HSA-212436 Generic Transcription Pathway
R-HSA-6807070 PTEN Regulation
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-1257604 PIP3 activates AKT signaling
R-HSA-74160 Gene expression (Transcription)
R-HSA-9006925 Intracellular signaling by second messengers

-  Other Names for This Gene
  Alternate Gene Symbols: B3KWN6, D3DX13, NM_005614, NP_005605, Q15382, Q53Y56, Q99444, RHEB2, RHEB_HUMAN
UCSC ID: uc003wkh.1
RefSeq Accession: NM_005614
Protein: Q15382 (aka RHEB_HUMAN)
CCDS: CCDS5927.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_005614.3
exon count: 8CDS single in 3' UTR: no RNA size: 2092
ORF size: 555CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1195.00frame shift in genome: no % Coverage: 99.19
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.