Human Gene SMC4 (uc003fdf.1)
|
|
Sequence and Links to Tools and Databases
|
|
Primer design for this transcript
|
|
Genetic Association Studies of Complex Diseases and Disorders
|
|
Genetic Association Database (archive): SMC4
CDC HuGE Published Literature: SMC4
| |
|
|
MalaCards Disease Associations
|
|
Comparative Toxicogenomics Database (CTD)
|
|
RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
|
|
Microarray Expression Data
|
|
Press "+" in the title bar above to open this section.
| |
|
|
Orthologous Genes in Other Species
|
|
Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
Mouse | Rat | Zebrafish | D. melanogaster | C. elegans | S. cerevisiae |
No ortholog | No ortholog | No ortholog | No ortholog | No ortholog | No ortholog |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
| | | | | |
|
| |
|
|
Descriptions from all associated GenBank mRNAs
|
|
BC106033 - Homo sapiens structural maintenance of chromosomes 4, mRNA (cDNA clone IMAGE:4996934), partial cds. AK002200 - Homo sapiens cDNA FLJ11338 fis, clone PLACE1010720, highly similar to Homo sapiens mRNA for chromosome-associated polypeptide-C. BC070161 - Homo sapiens structural maintenance of chromosomes 4, mRNA (cDNA clone IMAGE:4252738), partial cds. AK225437 - Homo sapiens mRNA for SMC4L1 protein variant, clone: HRC12916. AK315070 - Homo sapiens cDNA, FLJ96024. AK128143 - Homo sapiens cDNA FLJ46264 fis, clone TESTI4026080, highly similar to Structural maintenance of chromosomes 4-like 1 protein. AK307508 - Homo sapiens cDNA, FLJ97456. AB019987 - Homo sapiens hCAP-C mRNA for chromosome-associated polypeptide-C, complete cds. BC065259 - Homo sapiens structural maintenance of chromosomes 4, mRNA (cDNA clone IMAGE:6145405), partial cds. BC001557 - Homo sapiens structural maintenance of chromosomes 4, mRNA (cDNA clone IMAGE:3460137), partial cds. AL833949 - Homo sapiens mRNA; cDNA DKFZp434N2050 (from clone DKFZp434N2050). AL136877 - Homo sapiens mRNA; cDNA DKFZp434F205 (from clone DKFZp434F205). BC146370 - Synthetic construct Homo sapiens clone IMAGE:100015108, MGC:180205 structural maintenance of chromosomes 4 (SMC4) mRNA, encodes complete protein. BC148796 - Synthetic construct Homo sapiens clone IMAGE:100015924, MGC:183218 structural maintenance of chromosomes 4 (SMC4) mRNA, encodes complete protein. AB527221 - Synthetic construct DNA, clone: pF1KB7320, Homo sapiens SMC4 gene for structural maintenance of chromosomes 4, without stop codon, in Flexi system. AF092564 - Homo sapiens chromosome-associated protein-C (hCAP-C) mRNA, partial cds. AK122939 - Homo sapiens cDNA FLJ16648 fis, clone TESTI4035508, highly similar to Structural maintenance of chromosomes 4-like 1 protein.
| |
|
|
Other Names for This Gene
|
|
Alternate Gene Symbols: AK002200, NM_005496 UCSC ID: uc003fdf.1 RefSeq Accession: NM_005496
| |
|
|
Gene Model Information
|
|
category:
| nearCoding
| nonsense-mediated-decay:
| yes
| RNA accession:
| AK002200.1
|
exon count:
| 9 | CDS single in 3' UTR:
| no
| RNA size:
| 1756 |
ORF size:
| 0 | CDS single in intron:
| no
| Alignment % ID:
| 99.89 |
txCdsPredict score:
| 1765.00 | frame shift in genome:
| no
| % Coverage:
| 100.00 |
has start codon:
| yes
| stop codon in genome:
| no
| # of Alignments:
| 1 |
has end codon:
| yes
| retained intron:
| no
| # AT/AC introns
| 0 |
selenocysteine:
| no
| end bleed into intron:
| 0 | # strange splices:
| 0 |
|
Click here
for a detailed description of the fields of the table above.
| |
|
|
Methods, Credits, and Use Restrictions
|
|
Click here
for details on how this gene model was made and data restrictions if any.
| |
|
|
|