Human Gene SLC15A3 (ENST00000681275.1) from GENCODE V38
  Description: solute carrier family 15 member 3 (from HGNC SLC15A3)
Gencode Transcript: ENST00000681275.1
Gencode Gene: ENSG00000110446.12
Transcript (Including UTRs)
   Position: hg38 chr11:60,937,084-60,952,080 Size: 14,997 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg38 chr11:60,937,550-60,951,551 Size: 14,002 Coding Exon Count: 8 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-09-27 09:51:20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:60,937,084-60,952,080)mRNA (may differ from genome)Protein (535 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCMGI
PubMed

-  MalaCards Disease Associations
  MalaCards Gene Search: SLC15A3
Diseases sorted by gene-association score: diabetes mellitus, permanent neonatal (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 42.71 RPKM in Spleen
Total median expression: 480.85 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -126.60529-0.239 Picture PostScript Text
3' UTR -104.60324-0.323 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  BC037974 - Homo sapiens solute carrier family 15, member 3, mRNA (cDNA clone MGC:46085 IMAGE:5213632), complete cds.
BC025710 - Homo sapiens solute carrier family 15, member 3, mRNA (cDNA clone MGC:34324 IMAGE:5224878), complete cds.
AF135600 - Homo sapiens osteoclast transporter hOCTP (OCTP) mRNA, complete cds.
AB020598 - Homo sapiens mRNA for peptide transporter 3, complete cds.
AK127216 - Homo sapiens cDNA FLJ45283 fis, clone BRHIP3001878, highly similar to Homo sapiens peptide transporter 3 (PHT2).
AK130141 - Homo sapiens cDNA FLJ26631 fis, clone MPC06518, highly similar to Homo sapiens peptide transporter 3 (PHT2).
JD192251 - Sequence 173275 from Patent EP1572962.
JD180019 - Sequence 161043 from Patent EP1572962.
JD179648 - Sequence 160672 from Patent EP1572962.
JD138862 - Sequence 119886 from Patent EP1572962.
JD409563 - Sequence 390587 from Patent EP1572962.
JD038618 - Sequence 19642 from Patent EP1572962.
JD215711 - Sequence 196735 from Patent EP1572962.
JD373299 - Sequence 354323 from Patent EP1572962.
JD045362 - Sequence 26386 from Patent EP1572962.
JD328548 - Sequence 309572 from Patent EP1572962.
JD243515 - Sequence 224539 from Patent EP1572962.
JD343238 - Sequence 324262 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AB020598, uc289cbr.1
UCSC ID: ENST00000681275.1
RefSeq Accession: NM_016582

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.