Gene interactions and pathways from curated databases and text-mining

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ITGB1 — TNR

Pathways - manually collected, often from reviews:

  • KEGG Focal adhesion: CHAD/COL11A1/COL11A2/COL1A1/COL1A2/COL2A1/COL3A1/COL4A1/COL4A2/COL4A4/COL4A5/COL4A6/COL5A1/COL5A2/COL5A3/COL6A1/COL6A2/COL6A3/COL6A6/COMP/FN1/IBSP/LAMA1/LAMA2/LAMA3/LAMA4/LAMA5/LAMB1/LAMB2/LAMB3/LAMB4/LAMC1/LAMC2/LAMC3/RELN/SPP1/THBS1/THBS2/THBS3/THBS4/TNC/TNN/TNR/TNXB/VTN/VWF → Complex of 21 proteins (protein-protein, activation)
  • KEGG ECM-receptor interaction: TNC/TNN/TNR/TNXB → Complex of ITGA8-ITGB1 (protein-protein, activation)
  • KEGG ECM-receptor interaction: TNC/TNN/TNR/TNXB → Complex of ITGA9-ITGB1 (protein-protein, activation)