Gene interactions and pathways from curated databases and text-mining
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<type 'exceptions.AssertionError'>
Python 2.7.5: /usr/bin/python2
Sat Nov 28 04:21:29 2020

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /data/apache/cgi-bin/hgGeneGraph in ()
   2033     htmlMiddle()
   2034     jsInlineFinish()
   2035     htmlPageEnd()
   2036 
=> 2037 main()
main = <function main>
 /data/apache/cgi-bin/hgGeneGraph in main()
   2031     htmlHeader()
   2032     printInlineAndStyles()
=> 2033     htmlMiddle()
   2034     jsInlineFinish()
   2035     htmlPageEnd()
global htmlMiddle = <function htmlMiddle>
 /data/apache/cgi-bin/hgGeneGraph in htmlMiddle()
   2008         exit(0)
   2009 
=> 2010     showGraphBrowser()
   2011 
   2012 def main():
global showGraphBrowser = <function showGraphBrowser>
 /data/apache/cgi-bin/hgGeneGraph in showGraphBrowser()
   1371     conn = sqlConnect(GGDB)
   1372 
=> 1373     graphLinks, lowLinks = buildGraph(conn, gene, geneCount, MINSUPP, addNeighbors)
   1374     weightedLinks, minAbsCount = flattenLink(graphLinks)
   1375 
graphLinks undefined, lowLinks undefined, global buildGraph = <function buildGraph>, conn = <_mysql.connection open to 'localhost' at 8dcca0>, gene = 'C12ORF57', geneCount = 25, global MINSUPP = 2, addNeighbors = True
 /data/apache/cgi-bin/hgGeneGraph in buildGraph(conn=<_mysql.connection open to 'localhost' at 8dcca0>, gene='C12ORF57', geneCount=25, minSupp=2, addNeighbors=True)
    545             # add the high links back to the graph
    546             for pair, linkData in otherLinks.iteritems():
=>  547                 assert(pair not in graphLinks)
    548                 graphLinks[pair] = linkData
    549 
pair = ('C12orf57', 'LETM1'), graphLinks = defaultdict(<type 'set'>, {('C12orf57', 'LETM1')...'PLXNB2'): (0, ['biogrid'], ['ppi'], 13722, '')})

<type 'exceptions.AssertionError'>:
      args = ()
      message = ''