Track Data Hubs
 

Track data hubs are collections of external tracks that can be added to the UCSC Genome Browser. Click Connect to attach a hub and redirect to the assembly gateway page. Hub tracks will then show up in the hub's own blue bar track group under the browser graphic. For more information, including where to host your track hub, see our User's Guide.

Track Hubs are created and maintained by external sources. UCSC is not responsible for their content.

The list below can be filtered on words in the hub description pages or by assemblies.
Search terms: Assembly:
Displayed list restricted by search terms: repeat

When exploring the detailed search results for a hub, you may right-click on an assembly or track line to open it in a new window.

Display Hub Name Description AssembliesClick to connect and browse directly
Bird Alignment (363 species) Bird Alignment (363 species) [+] Gallus_gallus, Acanthisitta_chloris...
Bird assemblies Bird genome assemblies [+] GCF_000699105.1, GCF_000698965.1...
BrainEpigenomeHub DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples hg19
Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 canFam3
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health hg19, mm9, hg38
Cotney Lab Human Embryonic Heart Hub Human Embryonic Heart Tissue Epigenomic and Transcriptomic Data from the Cotney Lab at UConn Health hg19, hg38
DASHR v2.0 Hub DASHR v2.0 Human small non-coding RNA data hub hg19, hg38
dbVar Hub NCBI's database of human genomic Structural Variation -- large variants >50 bp hg19, hg38
Dfam database of TE families and annotations Dfam database of Transposable Element families and genome annotations hg38
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, panTro4, ponAbe2...
ENCODE Analysis Hub ENCODE Integrative Analysis Data Hub hg19
Exp/Meth VNTR hub Association of VNTRs with Expression and Methylation in GTEx, PCGC and PPMI hg19, hg38
FaceBase Hub Comprehensive craniofacial research data from FaceBase.org mm9, mm10, hg18, hg19
Fish assemblies Fish genome assemblies [+] GCF_000485575.1, GCF_018492685.1...
Fungi assemblies Fungi genome assemblies [+] GCF_003184765.1, GCF_001890905.1...
GTEx Analysis Hub Genotype Tissue Expression (GTEx) Project Analysis Hub hg19, hg38
Human Global Reference Genomes Human Global Reference Genome assembly hub [+] GCA_003601015.1_HG03807_prelim_1.0...
human p53 Binding And Expression Resource (BAER) hub human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015 hg19
human T2T-CHM13 v2.0 human T2T-CHM13 v2.0/Homo sapiens/GCA_009914755.4_T2T-CHM13v2.0 genome assembly GCA_009914755.4
IDEAS roadmap 20states Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm hg19
Invertebrate assemblies Invertebrate genome assemblies [+] GCA_905333045.1, GCF_000005575.2...
Mammal and Bird Alignment (605 species) Mammal and Bird Alignment (605 species) [+] Homo_sapiens, Gallus_gallus...
Mammal assemblies Mammal genome assemblies [+] GCF_000298275.1, GCA_001887905.1...
miRcode microRNA sites Predicted microRNA target sites in GENCODE transcripts hg19
Mouse strain assemblies Assembly and alignment data for 16 different mouse strains plus rat. [+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, SPRET_EiJ, AKR_J...
Plant assemblies Plant genome assemblies [+] GCF_001190045.1, GCF_000442705.1...
Polytract Repeats Very Short Tandem Repeats (MNR/DNR/TNR) hg38, mm10, rn6, dm6
Primate assemblies Primate genome assemblies [+] GCF_000951035.1, GCA_004027145.1...
Primate x4 NeuroDiff and Human CRISPRa RNAseq coverage tracks from 4 Primate neuro-differentiation assays and a human CRISPRa assay hg19, panTro4, ponAbe2, rheMac8
Purple sea star Assembly Hub This is the Assembly Hub of the purple sea star (Pisaster ochraceus, assembly 12Jun2017_28pcJ) 12Jun2017_28pcJ
RefSeqFE Hub ERROR: connection timeout to ftp.ncbi.nlm.nih.gov Couldn't open https://ftp.ncbi.nlm.nih.gov/refseq/FunctionalElements/trackhub/hub.txt Debug Help GCA_009914755.4, hg19, hg38, mm10, mm39
ReMap 2020 Regulatory Atlas ReMap 2020: An atlas of regulatory regions from an integrative analysis of Human and Arabidopsis thaliana DNA-binding sequencing experiments. Go to ReMap for more info. hg38, araTha1
ReMap 2022 Regulatory Atlas ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to ReMap2022 for more info. mm10, mm39, hg38, hg19, dm6, araTha1
Roadmap Epigenomics Data Complete Collection at Wash U VizHub Roadmap Epigenomics Human Epigenome Atlas Data Complete Collection, VizHub at Washington University in St. Louis hg19, hg38
Roadmap Epigenomics Integrative Analysis Hub Roadmap Epigenomics Integrative Analysis Hub at Washington University in St. Louis hg19
SIHUMI simplified human intestinal microbiota HUB [+] bact, bifi, blautia, anaero, ery, clostri, lacto...
singing mouse genome hub This is the genome hub for Alston's singing mouse (Scotinomys teguina). steguina
UCSC Repeat Browser 2020 Update Human Repeat consensuses annotated with lifted tracks hg38reps, hg19, hg38
Umap and Bismap mappability Uniquely mappable regions of genome and methylome hg38, hg19, mm9, mm10
UniProt Features UniProtKB reviewed protein features mapped to the Ensembl genome assembly. hg38
Vertebrate assemblies Vertebrate genome assemblies [+] GCF_003597395.1, GCF_017654675.1...
VGP primary Vertebrate Genomes Project primary assemblies [+] GCA_009769605.1, GCA_009819775.1...
Wasp spider hub This is the assembly hub of the wasp spider (Argiope bruennichi) argiope
WormBase WormBase nematode genomes [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Bird Alignment (363 species) Bird Alignment (363 species) [+] Gallus_gallus, Acanthisitta_chloris...
Bird assemblies Bird genome assemblies [+] GCF_000699105.1, GCF_000698965.1...
BrainEpigenomeHub DNA methylation, chromatin accessibility, and gene expression data from NeuN flow-sorted human brain samples hg19
Broad Improved Canine Annotation v1 Broad Institute CanFam3 Improved Annotation Data v1 canFam3
C_elegans_isolates C. elegans wild isolate assembly hub [+] CB4856Princeton_JR-contig...
Cotney Lab Human Craniofacial Epigenomics Human Embryonic Craniofacial Tissue Epigenomic Data and Chromatin State Segmentations from the Cotney Lab at UConn Health hg19, mm9, hg38
Cotney Lab Human Embryonic Heart Hub Human Embryonic Heart Tissue Epigenomic and Transcriptomic Data from the Cotney Lab at UConn Health hg19, hg38
DASHR v2.0 Hub DASHR v2.0 Human small non-coding RNA data hub hg19, hg38
dbVar Hub NCBI's database of human genomic Structural Variation -- large variants >50 bp hg19, hg38
Dfam database of TE families and annotations Dfam database of Transposable Element families and genome annotations hg38
DNA Methylation Hundreds of analyzed methylomes from bisulfite sequencing data [+] hg38, hg19, hg18, mm9, mm10, panTro2, panTro4, ponAbe2...
ENCODE Analysis Hub ENCODE Integrative Analysis Data Hub hg19
Exp/Meth VNTR hub Association of VNTRs with Expression and Methylation in GTEx, PCGC and PPMI hg19, hg38
FaceBase Hub Comprehensive craniofacial research data from FaceBase.org mm9, mm10, hg18, hg19
Fish assemblies Fish genome assemblies [+] GCF_000485575.1, GCF_018492685.1...
Fungi assemblies Fungi genome assemblies [+] GCF_003184765.1, GCF_001890905.1...
GTEx Analysis Hub Genotype Tissue Expression (GTEx) Project Analysis Hub hg19, hg38
Human Global Reference Genomes Human Global Reference Genome assembly hub [+] GCA_003601015.1_HG03807_prelim_1.0...
human p53 Binding And Expression Resource (BAER) hub human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015 hg19
human T2T-CHM13 v2.0 human T2T-CHM13 v2.0/Homo sapiens/GCA_009914755.4_T2T-CHM13v2.0 genome assembly GCA_009914755.4
IDEAS roadmap 20states Roadmap Epigenomics 20 state genome segmentation using the IDEAS algorithm hg19
Invertebrate assemblies Invertebrate genome assemblies [+] GCA_905333045.1, GCF_000005575.2...
Mammal and Bird Alignment (605 species) Mammal and Bird Alignment (605 species) [+] Homo_sapiens, Gallus_gallus...