Schema for INSDC - Accession at INSDC - International Nucleotide Sequence Database Collaboration
  Database: danRer11    Primary Table: ucscToINSDC    Row Count: 1,923   Data last updated: 2017-06-07
Format description: UCSC to INSDC chromosome name translation table.
fieldexampleSQL type info description
chrom chr1varchar(255) values UCSC chromosome name
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 59578282int(10) unsigned range End position in chromosome
name CM002885.2varchar(255) values INSDC name at www.insdc.org

Connected Tables and Joining Fields
        danRer11.chromInfo.chrom (via ucscToINSDC.chrom)

Sample Rows
 
chromchromStartchromEndname
chr1059578282CM002885.2
chr10045420867CM002894.2
chr10_KZ114911v1_alt0211400KZ114911.1
chr10_KZ114912v1_alt0269797KZ114912.1
chr10_KZ114913v1_alt0162578KZ114913.1
chr10_KZ114914v1_alt0572329KZ114914.1
chr10_KZ114915v1_alt0287446KZ114915.1
chr10_KZ114916v1_alt0248020KZ114916.1
chr10_KZ114917v1_alt0250405KZ114917.1
chr10_KZ114918v1_alt0385835KZ114918.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

INSDC (ucscToINSDC) Track Description
 

Description

This track associates UCSC Genome Browser chromosome names to accession names from the International Nucleotide Sequence Database Collaboration (INSDC).

The data were downloaded from the NCBI assembly database.

Credits

The data for this track was prepared by Hiram Clawson.