Schema for Assembly - Assembly from Fragments
  Database: sacCer3    Primary Table: gold    Row Count: 17   Data last updated: 2011-08-24
Format description: How to get through chromosome based on fragments
fieldexampleSQL type info description
bin 73smallint(6) range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range start position in chromosome
chromEnd 230218int(10) unsigned range end position in chromosome
ix 1int(11) range ix of this fragment (useless)
type Ochar(1) values (W)GS contig, (P)redraft, (D)raft, (F)inished or (O)ther
frag BK006935.2varchar(255) values which fragment
fragStart 0int(10) unsigned range start position in frag
fragEnd 230218int(10) unsigned range end position in frag
strand +char(1) values + or - (orientation of fragment)

Sample Rows
 
binchromchromStartchromEndixtypefragfragStartfragEndstrand
73chrI02302181OBK006935.20230218+
73chrII08131841OBK006936.20813184+
73chrIII03166201OBK006937.20316620+
9chrIV015319331OBK006938.201531933+
73chrIX04398881OBK006942.20439888+
73chrV05768741OBK006939.20576874+
73chrVI02701611OBK006940.20270161+
9chrVII010909401OBK006941.201090940+
73chrVIII05626431OBK006934.20562643+
73chrX07457511OBK006943.20745751+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Assembly (gold) Track Description
 

Description

This track shows the final assembly of the Saccharomyces cerevisiae S288c assembly (GCA_000146045.2) as of April 2011. of the S. cerevisiae genome. Please note the sequencing status at: SGD™.

Chromosomes available in this assembly: chrI, chrII, chrIII, chrIV ... etc ... chrXVI, and chrM. See also: SGD™ Genome Snapshot/Overview.

Credits

The April 2011 Saccharomyces cerevisiae genome assembly is based on sequence from the NCBI R64-1-1 download directory.