Schema for INSDC - Accession at INSDC - International Nucleotide Sequence Database Collaboration
  Database: taeGut2    Primary Table: ucscToINSDC    Row Count: 37,096   Data last updated: 2014-04-15
Format description: UCSC to INSDC chromosome name translation table.
fieldexampleSQL type info description
chrom chr1varchar(255) values UCSC chromosome name
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 118548696int(10) unsigned range End position in chromosome
name CM000515.1varchar(255) values INSDC name at www.insdc.org

Connected Tables and Joining Fields
        taeGut2.chromInfo.chrom (via ucscToINSDC.chrom)

Sample Rows
 
chromchromStartchromEndname
chr10118548696CM000515.1
chr10020806668CM000527.1
chr10_ABQF01064160_random018935ABQF01064160.1
chr10_ABQF01070025_random07428ABQF01070025.1
chr10_ABQF01070026_random04033ABQF01070026.1
chr10_ABQF01082194_random05601ABQF01082194.1
chr10_ABQF01085055_random06270ABQF01085055.1
chr10_ABQF01093699_random06399ABQF01093699.1
chr10_ABQF01098639_random02493ABQF01098639.1
chr10_ABQF01099280_random03780ABQF01099280.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

INSDC (ucscToINSDC) Track Description
 

Description

This track associates UCSC Genome Browser chromosome names to accession names from the International Nucleotide Sequence Database Collaboration (INSDC).

The data were downloaded from the NCBI assembly database.

Credits

The data for this track was prepared by Hiram Clawson.