[Pub]{Mouse} Jeong 2013 Track Settings
 
Large conserved domains of low DNA methylation maintained by 5-hydroxymethycytosine and Dnmt3a

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Assembly: Human Feb. 2009 (GRCh37/hg19)

Jeong_Mouse_2013
We are planning to introduce the new version of methylone track hubs sometime between February 7 and February 14 2024. The following assemblies will be updated: mm39, gorGor6, canFam6, GCF_000001735.3, rn7, panTro6, hg38.

Description

Sample BS rate* Methylation Coverage %CpGs #HMR #AMR #PMD
Mouse_HSC-WT 0.000 0.782 12.090 0.975 45345 0 0 Download
Mouse_HSC-Dnmt3a-KO 0.000 0.675 29.249 0.998 53299 0 0 Download

* see Methods section for how the bisulfite conversion rate is calculated

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Display Conventions and Configuration

The various types of tracks associated with a methylome follow the display conventions below. Green intervals represent partially methylated region; Blue intervals represent hypo-methylated regions; Yellow bars represent methylation levels; Black bars represent depth of coverage; Purple intervals represent allele-specific methylated regions; Purple bars represent allele-specific methylation score; and red intervals represent hyper-methylated regions.