Rfam ncRNA annotations (5S_rRNA)
 
Outside Link: 5S_rRNA
Item: 5S_rRNA
Position: chr01p:3122505-3122622
Genomic Size: 118
View DNA for this feature (ci2/C. intestinalis)
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Go to Rfam ncRNA track controls

Data last updated at UCSC: 2015-01-27 03:35:00

Description

These tracks show non-coding RNAs from the Rfam database. These tracks were created from the Rfam 12.0 covariance models (CMs), using the cmsearch program from the Infernal package. Further information about the methods used to build Rfam families can be found on our web page.

Methods

The cmsearch program was used with the --rfam, --cut_ga and --nohmmonly command line options to calculate the positions of non-coding RNAs on each genome assembly. This reproduces the method used by Rfam curators when creating each family, including the use of expertly curated thresholds for each family.

Credits

This data was generated by the Rfam database. Please email us with any questions or suggestions.

References

Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner PP, Jones TA, Tate J, Finn RD. Rfam 12.0: updates to the RNA families database. Nucleic Acids Res. 2014. PMID: 25392425.