Human Gene ADAM19 (uc003lwz.4)
  Description: Homo sapiens ADAM metallopeptidase domain 19 (ADAM19), mRNA.
RefSeq Summary (NM_033274): This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are membrane-anchored proteins structurally related to snake venom disintegrins and have been implicated in a variety of biological processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis. This member is a type I transmembrane protein and serves as a marker for dendritic cell differentiation. It has been demonstrated to be an active metalloproteinase, which may be involved in normal physiological processes such as cell migration, cell adhesion, cell-cell and cell-matrix interactions, and signal transduction. It is proposed to play a role in pathological processes, such as cancer, inflammatory diseases, renal diseases, and Alzheimer's disease. [provided by RefSeq, May 2013]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Transcript (Including UTRs)
   Position: hg19 chr5:156,904,312-157,002,831 Size: 98,520 Total Exon Count: 23 Strand: -
Coding Region
   Position: hg19 chr5:156,907,957-157,002,704 Size: 94,748 Coding Exon Count: 23 

Page IndexSequence and LinksPrimersGenetic AssociationsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:156,904,312-157,002,831)mRNA (may differ from genome)Protein (918 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIOMIM
PubMedReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): ADAM19
CDC HuGE Published Literature: ADAM19
Positive Disease Associations: Bipolar Disorder , Heart Failure , Mental Disorders , Potassium , pulmonary function , Respiratory Function Tests , Tunica Media
Related Studies:
  1. Bipolar Disorder
    , , . [PubMed 0]
  2. Heart Failure
    , , . [PubMed 0]
  3. Mental Disorders
    Ke-Sheng Wang et al. Schizophrenia research 2010, A genome-wide meta-analysis identifies novel loci associated with schizophrenia and bipolar disorder., Schizophrenia research. [PubMed 20889312]
           more ... click here to view the complete list

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.37 RPKM in Spleen
Total median expression: 190.46 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -71.50127-0.563 Picture PostScript Text
3' UTR -1359.083645-0.373 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF08516 - ADAM cysteine-rich
PF13574 - Metallo-peptidase family M12B Reprolysin-like
PF13582 - Metallo-peptidase family M12B Reprolysin-like
PF13583 - Metallo-peptidase family M12B Reprolysin-like
PF13688 - Metallo-peptidase family M12

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)

ModBase Predicted Comparative 3D Structure on Q9H013-2
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Descriptions from all associated GenBank mRNAs
  AK091464 - Homo sapiens cDNA FLJ34145 fis, clone FCBBF3011867, highly similar to ADAM 19 precursor (EC 3.4.24.-).
AX747000 - Sequence 525 from Patent EP1308459.
BC024214 - Homo sapiens ADAM metallopeptidase domain 19 (meltrin beta), mRNA (cDNA clone IMAGE:3604198), partial cds.
BC033132 - Homo sapiens ADAM metallopeptidase domain 19 (meltrin beta), mRNA (cDNA clone IMAGE:3615066), partial cds.
Y13786 - Homo sapiens mRNA for meltrin-beta/ADAM 19 homologue.
LF209044 - JP 2014500723-A/16547: Polycomb-Associated Non-Coding RNAs.
AK093535 - Homo sapiens cDNA FLJ36216 fis, clone THYMU2000702.
AX748188 - Sequence 1713 from Patent EP1308459.
AL049415 - Homo sapiens mRNA; cDNA DKFZp586N2119 (from clone DKFZp586N2119).
JD093230 - Sequence 74254 from Patent EP1572962.
JD419011 - Sequence 400035 from Patent EP1572962.
JD283808 - Sequence 264832 from Patent EP1572962.
JD046531 - Sequence 27555 from Patent EP1572962.
JD054567 - Sequence 35591 from Patent EP1572962.
LF325533 - JP 2014500723-A/133036: Polycomb-Associated Non-Coding RNAs.
JD079774 - Sequence 60798 from Patent EP1572962.
LF325532 - JP 2014500723-A/133035: Polycomb-Associated Non-Coding RNAs.
JD403169 - Sequence 384193 from Patent EP1572962.
JD521866 - Sequence 502890 from Patent EP1572962.
JD551908 - Sequence 532932 from Patent EP1572962.
JD243581 - Sequence 224605 from Patent EP1572962.
LF325531 - JP 2014500723-A/133034: Polycomb-Associated Non-Coding RNAs.
JD102791 - Sequence 83815 from Patent EP1572962.
LF325530 - JP 2014500723-A/133033: Polycomb-Associated Non-Coding RNAs.
JD426032 - Sequence 407056 from Patent EP1572962.
JD313059 - Sequence 294083 from Patent EP1572962.
JD281241 - Sequence 262265 from Patent EP1572962.
JD312806 - Sequence 293830 from Patent EP1572962.
JD282912 - Sequence 263936 from Patent EP1572962.
JD427471 - Sequence 408495 from Patent EP1572962.
JD201855 - Sequence 182879 from Patent EP1572962.
JD419408 - Sequence 400432 from Patent EP1572962.
JD284288 - Sequence 265312 from Patent EP1572962.
JD166942 - Sequence 147966 from Patent EP1572962.
JD467326 - Sequence 448350 from Patent EP1572962.
JD448612 - Sequence 429636 from Patent EP1572962.
JD545328 - Sequence 526352 from Patent EP1572962.
JD194538 - Sequence 175562 from Patent EP1572962.
LF325528 - JP 2014500723-A/133031: Polycomb-Associated Non-Coding RNAs.
JD054933 - Sequence 35957 from Patent EP1572962.
JD429955 - Sequence 410979 from Patent EP1572962.
JD261654 - Sequence 242678 from Patent EP1572962.
LF325527 - JP 2014500723-A/133030: Polycomb-Associated Non-Coding RNAs.
JD268706 - Sequence 249730 from Patent EP1572962.
JD501738 - Sequence 482762 from Patent EP1572962.
JD420330 - Sequence 401354 from Patent EP1572962.
JD301217 - Sequence 282241 from Patent EP1572962.
LF325525 - JP 2014500723-A/133028: Polycomb-Associated Non-Coding RNAs.
JD108437 - Sequence 89461 from Patent EP1572962.
JD338752 - Sequence 319776 from Patent EP1572962.
JD233861 - Sequence 214885 from Patent EP1572962.
JD261391 - Sequence 242415 from Patent EP1572962.
JD153971 - Sequence 134995 from Patent EP1572962.
JD190613 - Sequence 171637 from Patent EP1572962.
JD373153 - Sequence 354177 from Patent EP1572962.
JD454191 - Sequence 435215 from Patent EP1572962.
JD058173 - Sequence 39197 from Patent EP1572962.
JD172666 - Sequence 153690 from Patent EP1572962.
JD334539 - Sequence 315563 from Patent EP1572962.
AF311317 - Homo sapiens disintegrin and metalloproteinase ADAM19 (ADAM19) mRNA, complete cds.
JD092485 - Sequence 73509 from Patent EP1572962.
JD122915 - Sequence 103939 from Patent EP1572962.
JD450093 - Sequence 431117 from Patent EP1572962.
JD474941 - Sequence 455965 from Patent EP1572962.
JD122135 - Sequence 103159 from Patent EP1572962.
LF325521 - JP 2014500723-A/133024: Polycomb-Associated Non-Coding RNAs.
JD539338 - Sequence 520362 from Patent EP1572962.
JD365946 - Sequence 346970 from Patent EP1572962.
JD132348 - Sequence 113372 from Patent EP1572962.
JD416923 - Sequence 397947 from Patent EP1572962.
JD201089 - Sequence 182113 from Patent EP1572962.
JD077446 - Sequence 58470 from Patent EP1572962.
JD251094 - Sequence 232118 from Patent EP1572962.
LF325520 - JP 2014500723-A/133023: Polycomb-Associated Non-Coding RNAs.
AF134707 - Homo sapiens disintegrin and metalloproteinase domain 19 (ADAM19) mRNA, partial cds.
AF326918 - Homo sapiens metalloprotease-disintegrin meltrin beta (FKSG34) mRNA, complete cds.
BC140323 - Synthetic construct Homo sapiens clone IMAGE:100014343, MGC:173210 ADAM metallopeptidase domain 19 (meltrin beta) (ADAM19) mRNA, encodes complete protein.
AB462931 - Synthetic construct DNA, clone: pF1KB7300, Homo sapiens ADAM19 gene for ADAM metallopeptidase domain 19, without stop codon, in Flexi system.
LF325517 - JP 2014500723-A/133020: Polycomb-Associated Non-Coding RNAs.
AK308182 - Homo sapiens cDNA, FLJ98130.
LF325515 - JP 2014500723-A/133018: Polycomb-Associated Non-Coding RNAs.
LF325513 - JP 2014500723-A/133016: Polycomb-Associated Non-Coding RNAs.
LF325512 - JP 2014500723-A/133015: Polycomb-Associated Non-Coding RNAs.
LF325505 - JP 2014500723-A/133008: Polycomb-Associated Non-Coding RNAs.
LF325488 - JP 2014500723-A/132991: Polycomb-Associated Non-Coding RNAs.
LF325487 - JP 2014500723-A/132990: Polycomb-Associated Non-Coding RNAs.
LF325450 - JP 2014500723-A/132953: Polycomb-Associated Non-Coding RNAs.
JD461938 - Sequence 442962 from Patent EP1572962.
LF325449 - JP 2014500723-A/132952: Polycomb-Associated Non-Coding RNAs.
JD475437 - Sequence 456461 from Patent EP1572962.
MA561110 - JP 2018138019-A/133036: Polycomb-Associated Non-Coding RNAs.
MA561109 - JP 2018138019-A/133035: Polycomb-Associated Non-Coding RNAs.
MA561108 - JP 2018138019-A/133034: Polycomb-Associated Non-Coding RNAs.
MA561107 - JP 2018138019-A/133033: Polycomb-Associated Non-Coding RNAs.
MA561105 - JP 2018138019-A/133031: Polycomb-Associated Non-Coding RNAs.
MA561104 - JP 2018138019-A/133030: Polycomb-Associated Non-Coding RNAs.
MA561102 - JP 2018138019-A/133028: Polycomb-Associated Non-Coding RNAs.
MA561098 - JP 2018138019-A/133024: Polycomb-Associated Non-Coding RNAs.
MA561097 - JP 2018138019-A/133023: Polycomb-Associated Non-Coding RNAs.
MA561094 - JP 2018138019-A/133020: Polycomb-Associated Non-Coding RNAs.
MA561092 - JP 2018138019-A/133018: Polycomb-Associated Non-Coding RNAs.
MA561090 - JP 2018138019-A/133016: Polycomb-Associated Non-Coding RNAs.
MA561089 - JP 2018138019-A/133015: Polycomb-Associated Non-Coding RNAs.
MA561082 - JP 2018138019-A/133008: Polycomb-Associated Non-Coding RNAs.
MA561065 - JP 2018138019-A/132991: Polycomb-Associated Non-Coding RNAs.
MA561064 - JP 2018138019-A/132990: Polycomb-Associated Non-Coding RNAs.
MA561027 - JP 2018138019-A/132953: Polycomb-Associated Non-Coding RNAs.
MA561026 - JP 2018138019-A/132952: Polycomb-Associated Non-Coding RNAs.
MA444621 - JP 2018138019-A/16547: Polycomb-Associated Non-Coding RNAs.
MP202700 - Sequence 11 from Patent WO2019090263.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9H013 (Reactome details) participates in the following event(s):

R-HSA-8941234 SH3PXD2A binds ADAM12,ADAM15,ADAM19
R-HSA-8941237 Invadopodia formation
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: FKSG34, MLTNB, NM_033274, NP_150377, Q9H013-2, uc003lwz.3
UCSC ID: uc003lwz.4
RefSeq Accession: NM_033274
Protein: Q9H013-2, splice isoform of Q9H013 CCDS: CCDS4338.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_033274.4
exon count: 23CDS single in 3' UTR: no RNA size: 6554
ORF size: 2757CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5696.00frame shift in genome: no % Coverage: 99.62
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.