Human Gene EIF2B3 (uc001cmt.3)
  Description: Homo sapiens eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa (EIF2B3), transcript variant 1, mRNA.
RefSeq Summary (NM_020365): The protein encoded by this gene is one of the subunits of initiation factor eIF2B, which catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP. It has also been found to function as a cofactor of hepatitis C virus internal ribosome entry site-mediated translation. Mutations in this gene have been associated with leukodystrophy with vanishing white matter. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2009].
Transcript (Including UTRs)
   Position: hg19 chr1:45,316,194-45,452,394 Size: 136,201 Total Exon Count: 12 Strand: -
Coding Region
   Position: hg19 chr1:45,316,623-45,446,840 Size: 130,218 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviews
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:45,316,194-45,452,394)mRNA (may differ from genome)Protein (452 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EI2BG_HUMAN
DESCRIPTION: RecName: Full=Translation initiation factor eIF-2B subunit gamma; AltName: Full=eIF-2B GDP-GTP exchange factor subunit gamma;
FUNCTION: Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
SUBUNIT: Complex of five different subunits; alpha, beta, gamma, delta and epsilon.
DISEASE: Defects in EIF2B3 are a cause of leukodystrophy with vanishing white matter (VWM) [MIM:603896]. VWM is a leukodystrophy that occurs mainly in children. Neurological signs include progressive cerebellar ataxia, spasticity, inconstant optic atrophy and relatively preserved mental abilities. The disease is chronic-progressive with, in most individuals, additional episodes of rapid deterioration following febrile infections or minor head trauma. While childhood onset is the most common form of the disorder, some severe forms are apparent at birth. A severe, early-onset form seen among the Cree and Chippewayan populations of Quebec and Manitoba is called Cree leukoencephalopathy. Milder forms may not become evident until adolescence or adulthood. Some females with milder forms of the disease who survive to adolescence exhibit ovarian dysfunction. This variant of the disorder is called ovarioleukodystrophy.
SIMILARITY: Belongs to the eIF-2B gamma/epsilon subunits family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/EIF2B3";
WEB RESOURCE: Name=Mendelian genes eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa (EIF2B3); Note=Leiden Open Variation Database (LOVD); URL="http://www.lovd.nl/EIF2B3";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): EIF2B3
CDC HuGE Published Literature: EIF2B3

-  MalaCards Disease Associations
  MalaCards Gene Search: EIF2B3
Diseases sorted by gene-association score: leukoencephalopathy with vanishing white matter* (705), childhood ataxia with central nervous system hypomyelination/vanishing white matter* (231), eif2b3-related childhood ataxia with central nervous system hypomyelination/vanishing white matter* (100), leukodystrophy (12), hepatitis c virus (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 14.53 RPKM in Muscle - Skeletal
Total median expression: 367.35 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -96.00239-0.402 Picture PostScript Text
3' UTR -149.60429-0.349 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005835 - NTP_transferase

Pfam Domains:
PF00483 - Nucleotidyl transferase
PF12804 - MobA-like NTP transferase domain

SCOP Domains:
51161 - Trimeric LpxA-like enzymes
53448 - Nucleotide-diphospho-sugar transferases

ModBase Predicted Comparative 3D Structure on Q9NR50
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsemblFlyBaseWormBaseSGD
 Protein SequenceProtein SequenceProtein SequenceProtein SequenceProtein Sequence
 AlignmentAlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003743 translation initiation factor activity
GO:0005085 guanyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0016779 nucleotidyltransferase activity
GO:0008135 translation factor activity, RNA binding

Biological Process:
GO:0006412 translation
GO:0006413 translational initiation
GO:0009058 biosynthetic process
GO:0009408 response to heat
GO:0009749 response to glucose
GO:0014003 oligodendrocyte development
GO:0021766 hippocampus development
GO:0043434 response to peptide hormone
GO:0050852 T cell receptor signaling pathway

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005851 eukaryotic translation initiation factor 2B complex


-  Descriptions from all associated GenBank mRNAs
  BC018728 - Homo sapiens eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa, mRNA (cDNA clone MGC:31831 IMAGE:4849789), complete cds.
AK022399 - Homo sapiens cDNA FLJ12337 fis, clone MAMMA1002236, highly similar to TRANSLATION INITIATION FACTOR EIF-2B GAMMA SUBUNIT.
BC021017 - Homo sapiens eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa, mRNA (cDNA clone IMAGE:3629653).
BC014234 - Homo sapiens cDNA clone IMAGE:4555992, containing frame-shift errors.
AK024006 - Homo sapiens cDNA FLJ13944 fis, clone Y79AA1000968, highly similar to Rattus norvegicus initiation factor eIF-2B gamma subunit (eIF-2B gamma) mRNA.
AF257077 - Homo sapiens eukaryotic translation initiation factor EIF2B subunit 3 (EIF2B3) mRNA, complete cds.
AK314668 - Homo sapiens cDNA, FLJ95515, Homo sapiens eukaryotic translation initiation factor 2B, subunit 3gamma, 58kDa (EIF2B3), mRNA.
CR457285 - Homo sapiens full open reading frame cDNA clone RZPDo834A0713D for gene EIF2B3, eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa; complete cds, incl. stopcodon.
LF383898 - JP 2014500723-A/191401: Polycomb-Associated Non-Coding RNAs.
AL834288 - Homo sapiens mRNA; cDNA DKFZp667G0511 (from clone DKFZp667G0511).
AB463033 - Synthetic construct DNA, clone: pF1KB8603, Homo sapiens EIF2B3 gene for eukaryotic translation initiation factor 2B, subunit 3 gamma, without stop codon, in Flexi system.
AM393609 - Synthetic construct Homo sapiens clone IMAGE:100002173 for hypothetical protein (EIF2B3 gene).
AM393782 - Synthetic construct Homo sapiens clone IMAGE:100002172 for hypothetical protein (EIF2B3 gene).
MA619475 - JP 2018138019-A/191401: Polycomb-Associated Non-Coding RNAs.
JD100006 - Sequence 81030 from Patent EP1572962.
JD476617 - Sequence 457641 from Patent EP1572962.
LF356278 - JP 2014500723-A/163781: Polycomb-Associated Non-Coding RNAs.
LF356277 - JP 2014500723-A/163780: Polycomb-Associated Non-Coding RNAs.
MA591855 - JP 2018138019-A/163781: Polycomb-Associated Non-Coding RNAs.
MA591854 - JP 2018138019-A/163780: Polycomb-Associated Non-Coding RNAs.
AX328371 - Sequence 143 from Patent WO0183754.
LF356274 - JP 2014500723-A/163777: Polycomb-Associated Non-Coding RNAs.
LF356272 - JP 2014500723-A/163775: Polycomb-Associated Non-Coding RNAs.
LF356267 - JP 2014500723-A/163770: Polycomb-Associated Non-Coding RNAs.
LF356265 - JP 2014500723-A/163768: Polycomb-Associated Non-Coding RNAs.
LF356264 - JP 2014500723-A/163767: Polycomb-Associated Non-Coding RNAs.
JD241342 - Sequence 222366 from Patent EP1572962.
JD552756 - Sequence 533780 from Patent EP1572962.
JD499416 - Sequence 480440 from Patent EP1572962.
MA591851 - JP 2018138019-A/163777: Polycomb-Associated Non-Coding RNAs.
MA591849 - JP 2018138019-A/163775: Polycomb-Associated Non-Coding RNAs.
MA591844 - JP 2018138019-A/163770: Polycomb-Associated Non-Coding RNAs.
MA591842 - JP 2018138019-A/163768: Polycomb-Associated Non-Coding RNAs.
MA591841 - JP 2018138019-A/163767: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_vegfPathway - VEGF, Hypoxia, and Angiogenesis

Reactome (by CSHL, EBI, and GO)

Protein Q9NR50 (Reactome details) participates in the following event(s):

R-HSA-72670 Formation of eIF2:GDP:eIF2B intermediate
R-HSA-72722 eIF2 activation
R-HSA-72731 Recycling of eIF2:GDP
R-HSA-72737 Cap-dependent Translation Initiation
R-HSA-72613 Eukaryotic Translation Initiation
R-HSA-72766 Translation
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: B2RBH8, D3DPZ2, EI2BG_HUMAN, NM_020365, NP_065098, Q5QP89, Q5QP90, Q8NDB5, Q8WV57, Q9H850, Q9NR50, uc001cmt.2
UCSC ID: uc001cmt.3
RefSeq Accession: NM_020365
Protein: Q9NR50 (aka EI2BG_HUMAN)
CCDS: CCDS517.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene EIF2B3:
cach (Childhood Ataxia with Central Nervous System Hypomyelination / Vanishing White Matter)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_020365.4
exon count: 12CDS single in 3' UTR: no RNA size: 2027
ORF size: 1359CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2792.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.