Human Gene HSPH1 (uc001utj.3)
  Description: Homo sapiens heat shock 105kDa/110kDa protein 1 (HSPH1), mRNA.
RefSeq Summary (NM_006644): This gene encodes a member of the heat shock protein 70 family of proteins. The encoded protein functions as a nucleotide exchange factor for the molecular chaperone heat shock cognate 71 kDa protein (Hsc70). In addition, this protein plays a distinct but related role as a holdase that inhibits the aggregation of misfolded proteins, including the cystic fibrosis transmembrane conductance regulator (CFTR) protein. Elevated expression of this protein has been observed in numerous human cancers. [provided by RefSeq, Mar 2017].
Transcript (Including UTRs)
   Position: hg19 chr13:31,710,763-31,736,117 Size: 25,355 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr13:31,711,455-31,735,719 Size: 24,265 Coding Exon Count: 18 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesModel Information
Methods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:31,710,763-31,736,117)mRNA (may differ from genome)Protein (858 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HS105_HUMAN
DESCRIPTION: RecName: Full=Heat shock protein 105 kDa; AltName: Full=Antigen NY-CO-25; AltName: Full=Heat shock 110 kDa protein;
FUNCTION: Prevents the aggregation of denatured proteins in cells under severe stress, on which the ATP levels decrease markedly. Inhibits HSPA8/HSC70 ATPase and chaperone activities (By similarity).
SUBUNIT: Interacts with HSPA8/HSC70 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm.
TISSUE SPECIFICITY: Highly expressed in testis. Present at lower levels in most brain regions, except cerebellum. Overexpressed in cancer cells.
PTM: Phosphorylation on Ser-509 may be important for regulation of the HSPA8/HSC70 chaperone activity (By similarity).
SIMILARITY: Belongs to the heat shock protein 70 family.
SEQUENCE CAUTION: Sequence=AAC18044.1; Type=Erroneous initiation; Sequence=BAA13192.2; Type=Erroneous initiation;
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="http://atlasgeneticsoncology.org/Genes/HSPH1ID40891ch13q12.html";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): HSPH1
CDC HuGE Published Literature: HSPH1
Positive Disease Associations: Body Mass Index , Body Weight
Related Studies:
  1. Body Mass Index
    Caroline S Fox et al. BMC medical genetics 2007, Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project., BMC medical genetics. [PubMed 17903300]
    Adiposity traits are associated with SNPs on the Affymetrix 100K SNP GeneChip. Replication of these initial findings is necessary. These data will serve as a resource for replication as more genes become identified with BMI and WC.
  2. Body Mass Index
    Caroline S Fox et al. BMC medical genetics 2007, Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project., BMC medical genetics. [PubMed 17903300]
    Adiposity traits are associated with SNPs on the Affymetrix 100K SNP GeneChip. Replication of these initial findings is necessary. These data will serve as a resource for replication as more genes become identified with BMI and WC.
  3. Body Mass Index
    Caroline S Fox et al. BMC medical genetics 2007, Genome-wide association to body mass index and waist circumference: the Framingham Heart Study 100K project., BMC medical genetics. [PubMed 17903300]
    Adiposity traits are associated with SNPs on the Affymetrix 100K SNP GeneChip. Replication of these initial findings is necessary. These data will serve as a resource for replication as more genes become identified with BMI and WC.
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: HSPH1
Diseases sorted by gene-association score: cystic fibrosis (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 74.13 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 1212.55 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -184.00398-0.462 Picture PostScript Text
3' UTR -152.10692-0.220 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018181 - Heat_shock_70_CS
IPR013126 - Hsp_70_fam

Pfam Domains:
PF00012 - Hsp70 protein
PF06723 - MreB/Mbl protein

SCOP Domains:
100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
53067 - Actin-like ATPase domain

ModBase Predicted Comparative 3D Structure on Q92598
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0000774 adenyl-nucleotide exchange factor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0043014 alpha-tubulin binding

Biological Process:
GO:0006898 receptor-mediated endocytosis
GO:0006986 response to unfolded protein
GO:0045345 positive regulation of MHC class I biosynthetic process
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051085 chaperone mediated protein folding requiring cofactor
GO:0051135 positive regulation of NK T cell activation
GO:0061098 positive regulation of protein tyrosine kinase activity
GO:1900034 regulation of cellular response to heat
GO:1903748 negative regulation of establishment of protein localization to mitochondrion
GO:1903751 negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide
GO:1903753 negative regulation of p38MAPK cascade
GO:2001234 negative regulation of apoptotic signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005874 microtubule
GO:0032991 macromolecular complex
GO:0070062 extracellular exosome
GO:0071682 endocytic vesicle lumen


-  Descriptions from all associated GenBank mRNAs
  BC037553 - Homo sapiens heat shock 105kDa/110kDa protein 1, mRNA (cDNA clone MGC:40320 IMAGE:4540927), complete cds.
BX648125 - Homo sapiens mRNA; cDNA DKFZp686G2440 (from clone DKFZp686G2440).
AF039695 - Homo sapiens antigen NY-CO-25 (NY-CO-25) mRNA, partial cds.
AB003333 - Homo sapiens HSP105 beta mRNA, complete cds.
AB003334 - Homo sapiens HSP105 alpha mRNA, complete cds.
D86956 - Homo sapiens mRNA for KIAA0201 gene.
AK302430 - Homo sapiens cDNA FLJ52364 complete cds, highly similar to Heat-shock protein 105 kDa.
BC018124 - Homo sapiens heat shock 105kDa/110kDa protein 1, mRNA (cDNA clone IMAGE:3913339), partial cds.
AK293955 - Homo sapiens cDNA FLJ55325 complete cds, highly similar to Heat-shock protein 105 kDa.
BX648623 - Homo sapiens mRNA; cDNA DKFZp686M05240 (from clone DKFZp686M05240).
AK302294 - Homo sapiens cDNA FLJ52360 complete cds, highly similar to Heat-shock protein 105 kDa.
DQ891727 - Synthetic construct clone IMAGE:100004357; FLH179456.01X; RZPDo839G09130D heat shock 105kDa/110kDa protein 1 (HSPH1) gene, encodes complete protein.
AK314576 - Homo sapiens cDNA, FLJ95408.
KJ893137 - Synthetic construct Homo sapiens clone ccsbBroadEn_02531 HSPH1 gene, encodes complete protein.
AB383796 - Synthetic construct DNA, clone: pF1KSDA0201, Homo sapiens HSPH1 gene for heat shock protein 105 kDa, complete cds, without stop codon, in Flexi system.
DQ894904 - Synthetic construct Homo sapiens clone IMAGE:100009364; FLH179452.01L; RZPDo839G09129D heat shock 105kDa/110kDa protein 1 (HSPH1) gene, encodes complete protein.
AK302832 - Homo sapiens cDNA FLJ51707 complete cds, highly similar to Heat-shock protein 105 kDa.
JD298426 - Sequence 279450 from Patent EP1572962.
JD188148 - Sequence 169172 from Patent EP1572962.
JD357626 - Sequence 338650 from Patent EP1572962.
JD156748 - Sequence 137772 from Patent EP1572962.
JD059386 - Sequence 40410 from Patent EP1572962.
JD358871 - Sequence 339895 from Patent EP1572962.
JD537655 - Sequence 518679 from Patent EP1572962.
JD358581 - Sequence 339605 from Patent EP1572962.
AK303029 - Homo sapiens cDNA FLJ50428 complete cds, moderately similar to Heat-shock protein 105 kDa.
CU691504 - Synthetic construct Homo sapiens gateway clone IMAGE:100017827 5' read HSPH1 mRNA.
AK307597 - Homo sapiens cDNA, FLJ97545.
AK311464 - Homo sapiens cDNA, FLJ18506.
JD142080 - Sequence 123104 from Patent EP1572962.
JD343567 - Sequence 324591 from Patent EP1572962.
JD142191 - Sequence 123215 from Patent EP1572962.
JD462479 - Sequence 443503 from Patent EP1572962.
JD102504 - Sequence 83528 from Patent EP1572962.
JD402753 - Sequence 383777 from Patent EP1572962.
JD549084 - Sequence 530108 from Patent EP1572962.
JD263918 - Sequence 244942 from Patent EP1572962.
JD225543 - Sequence 206567 from Patent EP1572962.
JD125115 - Sequence 106139 from Patent EP1572962.
JD233068 - Sequence 214092 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q92598 (Reactome details) participates in the following event(s):

R-HSA-2197645 SCARF1 (SREC-I) binds ligands
R-HSA-5252079 HSP110s exchange ATP for ADP on HSP70s:ADP
R-HSA-3000484 Scavenging by Class F Receptors
R-HSA-2173782 Binding and Uptake of Ligands by Scavenger Receptors
R-HSA-3371453 Regulation of HSF1-mediated heat shock response
R-HSA-5653656 Vesicle-mediated transport
R-HSA-3371556 Cellular response to heat stress
R-HSA-2262752 Cellular responses to stress
R-HSA-8953897 Cellular responses to external stimuli

-  Other Names for This Gene
  Alternate Gene Symbols: HS105_HUMAN, HSP105, HSP110, KIAA0201, NM_006644, NP_006635, O95739, Q5TBM6, Q5TBM7, Q5TBM8, Q92598, Q9UPC4
UCSC ID: uc001utj.3
RefSeq Accession: NM_006644
Protein: Q92598 (aka HS105_HUMAN)
CCDS: CCDS9340.1, CCDS66526.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_006644.2
exon count: 18CDS single in 3' UTR: no RNA size: 3680
ORF size: 2577CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 5333.00frame shift in genome: no % Coverage: 99.65
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.