Human Gene PARP10 (uc003zal.4)
  Description: Homo sapiens poly (ADP-ribose) polymerase family, member 10 (PARP10), mRNA.
RefSeq Summary (NM_032789): Poly(ADP-ribose) polymerases (PARPs), such as PARP10, regulate gene transcription by altering chromatin organization by adding ADP-ribose to histones. PARPs can also function as transcriptional cofactors (Yu et al., 2005 [PubMed 15674325]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: hg19 chr8:145,051,320-145,060,635 Size: 9,316 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr8:145,051,652-145,060,527 Size: 8,876 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr8:145,051,320-145,060,635)mRNA (may differ from genome)Protein (1025 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMalacards
MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PAR10_HUMAN
DESCRIPTION: RecName: Full=Poly [ADP-ribose] polymerase 10; Short=PARP-10; EC=2.4.2.30; AltName: Full=ADP-ribosyltransferase diphtheria toxin-like 10; Short=ARTD10;
FUNCTION: May play a role in cell proliferation. May be required for the maintenance of cell cycle progression.
CATALYTIC ACTIVITY: NAD(+) + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
SUBUNIT: Interacts with MYC.
SUBCELLULAR LOCATION: Nucleus, nucleolus. Cytoplasm. Note=Shuttles between the nuclear and cytoplasmic compartment. A subpopulation concentrates in the nucleolus during late G1/S phase.
TISSUE SPECIFICITY: Highly expressed in spleen and thymus. Intermediate levels in liver, kidney, pancreas, prostate, testis, ovary, intestine, and leukocytes. Low expression in heart, brain, placenta, lung, skeletal muscle, and colon.
PTM: Stimulated through its phosphorylation by CDK2. Acquires CDK- dependent phosphorylation through late-G1 to S phase, and from prometaphase to cytokinesis in the nucleolar organizing regions. Phosphorylation is suppressed in growth-arrested cells.
SIMILARITY: Contains 1 PARP catalytic domain.
SEQUENCE CAUTION: Sequence=BAC11498.1; Type=Frameshift; Positions=965;

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PARP10
Diseases sorted by gene-association score: arts syndrome (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 43.19 RPKM in Spleen
Total median expression: 709.62 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -54.40108-0.504 Picture PostScript Text
3' UTR -163.50332-0.492 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR012677 - Nucleotide-bd_a/b_plait
IPR012317 - Poly(ADP-ribose)pol_cat_dom
IPR003903 - Ubiquitin-int_motif

Pfam Domains:
PF00644 - Poly(ADP-ribose) polymerase catalytic domain
PF02809 - Ubiquitin interaction motif

SCOP Domains:
56399 - ADP-ribosylation

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DHX - NMR MuPIT 3HKV - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q53GL7
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
  Ensembl   
  Protein Sequence   
  Alignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003950 NAD+ ADP-ribosyltransferase activity
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0016757 transferase activity, transferring glycosyl groups
GO:0070530 K63-linked polyubiquitin binding

Biological Process:
GO:0006471 protein ADP-ribosylation
GO:0010629 negative regulation of gene expression
GO:0010847 regulation of chromatin assembly
GO:0032088 negative regulation of NF-kappaB transcription factor activity
GO:0034356 NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0045071 negative regulation of viral genome replication
GO:0048147 negative regulation of fibroblast proliferation
GO:0070212 protein poly-ADP-ribosylation
GO:0070213 protein auto-ADP-ribosylation
GO:1900045 negative regulation of protein K63-linked ubiquitination

Cellular Component:
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0043231 intracellular membrane-bounded organelle


-  Descriptions from all associated GenBank mRNAs
  LF210321 - JP 2014500723-A/17824: Polycomb-Associated Non-Coding RNAs.
AK124017 - Homo sapiens cDNA FLJ42023 fis, clone SPLEN2035318.
AK129821 - Homo sapiens cDNA FLJ26310 fis, clone DMC08768.
AK128537 - Homo sapiens cDNA FLJ46695 fis, clone TRACH3013043, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 10 (PARP10), mRNA.
LF337094 - JP 2014500723-A/144597: Polycomb-Associated Non-Coding RNAs.
AK027370 - Homo sapiens cDNA FLJ14464 fis, clone MAMMA1000309.
BC014229 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:4545211), partial cds.
AK075250 - Homo sapiens cDNA FLJ90769 fis, clone THYRO1000846.
AK097596 - Homo sapiens cDNA FLJ40277 fis, clone TESTI2027239.
BC019030 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:4554168), partial cds.
JD391738 - Sequence 372762 from Patent EP1572962.
JD219470 - Sequence 200494 from Patent EP1572962.
JD203554 - Sequence 184578 from Patent EP1572962.
AK303317 - Homo sapiens cDNA FLJ57250 complete cds, highly similar to Homo sapiens poly (ADP-ribose) polymerase family, member 10 (PARP10), mRNA.
JD139737 - Sequence 120761 from Patent EP1572962.
AK222914 - Homo sapiens mRNA for poly (ADP-ribose) polymerase family, member 10 variant, clone: HRC03908.
JD116009 - Sequence 97033 from Patent EP1572962.
BC132961 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone MGC:164592 IMAGE:40146983), complete cds.
BC144235 - Homo sapiens cDNA clone IMAGE:9052755.
JD429204 - Sequence 410228 from Patent EP1572962.
BC136542 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone MGC:168155 IMAGE:9020532), complete cds.
LF337095 - JP 2014500723-A/144598: Polycomb-Associated Non-Coding RNAs.
BC020378 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:3462485).
BC035485 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:5165135), with apparent retained intron.
BC030549 - Homo sapiens poly (ADP-ribose) polymerase family, member 10, mRNA (cDNA clone IMAGE:5212060).
DQ570509 - Homo sapiens piRNA piR-30621, complete sequence.
AK309251 - Homo sapiens cDNA, FLJ99292.
AK308657 - Homo sapiens cDNA, FLJ98698.
JD189640 - Sequence 170664 from Patent EP1572962.
JD227258 - Sequence 208282 from Patent EP1572962.
JD533546 - Sequence 514570 from Patent EP1572962.
JD199610 - Sequence 180634 from Patent EP1572962.
LQ980397 - Sequence 43 from Patent WO2013050532.
MA445898 - JP 2018138019-A/17824: Polycomb-Associated Non-Coding RNAs.
MA572671 - JP 2018138019-A/144597: Polycomb-Associated Non-Coding RNAs.
MA572672 - JP 2018138019-A/144598: Polycomb-Associated Non-Coding RNAs.
MP015237 - Sequence 440 from Patent WO2019016252.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q53GL7 (Reactome details) participates in the following event(s):

R-HSA-197264 Nicotinamide salvaging
R-HSA-196807 Nicotinate metabolism
R-HSA-196849 Metabolism of water-soluble vitamins and cofactors
R-HSA-196854 Metabolism of vitamins and cofactors
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: NM_032789, NP_116178, PAR10_HUMAN, Q53GL7, Q8N2I0, Q8WV05, Q96CH7, Q96K72
UCSC ID: uc003zal.4
RefSeq Accession: NM_032789
Protein: Q53GL7 (aka PAR10_HUMAN)
CCDS: CCDS34960.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_032789.3
exon count: 11CDS single in 3' UTR: no RNA size: 3525
ORF size: 3078CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 3269.00frame shift in genome: no % Coverage: 99.80
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.