Human Gene AGBL4 (ENST00000371836.1) from GENCODE V38
  Description: ATP/GTP binding protein like 4 (from HGNC AGBL4)
Gencode Transcript: ENST00000371836.1
Gencode Gene: ENSG00000186094.17
Transcript (Including UTRs)
   Position: hg38 chr1:48,817,507-50,023,900 Size: 1,206,394 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg38 chr1:48,818,203-50,023,796 Size: 1,205,594 Coding Exon Count: 7 

Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-09-27 09:51:20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:48,817,507-50,023,900)mRNA (may differ from genome)Protein (217 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsHGNCLynxMGI
PubMedUniProtKBWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: AGBL4
Diseases sorted by gene-association score: macular degeneration, age-related, 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 1.41 RPKM in Brain - Frontal Cortex (BA9)
Total median expression: 9.17 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.80104-0.287 Picture PostScript Text
3' UTR -224.30696-0.322 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on B1ANV5
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGI     
Protein Sequence     
Alignment     

-  Descriptions from all associated GenBank mRNAs
  AK094826 - Homo sapiens cDNA FLJ37507 fis, clone BRAWH2018206, weakly similar to Homo sapiens ATP/GTP binding protein-like 2 (AGBL2), mRNA.
AK294633 - Homo sapiens cDNA FLJ60499 complete cds.
AK294394 - Homo sapiens cDNA FLJ53507 complete cds, weakly similar to Homo sapiens ATP/GTP binding protein-like 2 (AGBL2), mRNA.
AK296221 - Homo sapiens cDNA FLJ56815 complete cds, weakly similar to Mus musculus ATP/GTP binding protein-like 3 (Agbl3), mRNA.
BC035739 - Homo sapiens ATP/GTP binding protein-like 4, mRNA (cDNA clone IMAGE:5741932), with apparent retained intron.
AK027348 - Homo sapiens cDNA FLJ14442 fis, clone HEMBB1001126.
BC144171 - Homo sapiens cDNA clone IMAGE:9052691.
BC126383 - Homo sapiens ATP/GTP binding protein-like 4, mRNA (cDNA clone MGC:161661 IMAGE:8992099), complete cds.
KJ903473 - Synthetic construct Homo sapiens clone ccsbBroadEn_12867 AGBL4 gene, encodes complete protein.
HQ258373 - Synthetic construct Homo sapiens clone IMAGE:100072802 Unknown protein gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: B1ANV5, B1ANV5_HUMAN, BC035739, RP11-342A17.1-003, uc057gjn.1
UCSC ID: ENST00000371836.1
RefSeq Accession: NM_001323575
Protein: B1ANV5

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.