Human Gene ERI3 (ENST00000649995.1) from GENCODE V38
  Description: ERI1 exoribonuclease family member 3 (from HGNC ERI3)
Gencode Transcript: ENST00000649995.1
Gencode Gene: ENSG00000117419.16
Transcript (Including UTRs)
   Position: hg38 chr1:44,221,339-44,355,061 Size: 133,723 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg38 chr1:44,232,372-44,355,026 Size: 122,655 Coding Exon Count: 9 

Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2021-09-27 09:51:20

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:44,221,339-44,355,061)mRNA (may differ from genome)Protein (315 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsHGNCLynx
MGIPubMedUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 45.48 RPKM in Testis
Total median expression: 1016.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -14.6035-0.417 Picture PostScript Text
3' UTR -154.60434-0.356 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
Genome BrowserGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
MGIRGD    
Protein SequenceProtein Sequence    
AlignmentAlignment    

-  Descriptions from all associated GenBank mRNAs
  AF007157 - Homo sapiens clone 23856 unknown mRNA, partial cds.
BC144384 - Homo sapiens cDNA clone IMAGE:9052905.
AK026596 - Homo sapiens cDNA: FLJ22943 fis, clone KAT08662, highly similar to AF007157 Homo sapiens clone 23856 unknown mRNA.
BC001072 - Homo sapiens exoribonuclease 3, mRNA (cDNA clone IMAGE:2819900), complete cds.
BC004456 - Homo sapiens exoribonuclease 3, mRNA (cDNA clone IMAGE:2819900), complete cds.
AK293833 - Homo sapiens cDNA FLJ60449 complete cds, highly similar to Homo sapiens prion protein interacting protein (PRNPIP), mRNA.
AK297708 - Homo sapiens cDNA FLJ56336 complete cds, highly similar to Homo sapiens prion protein interacting protein (PRNPIP), mRNA.
AK290567 - Homo sapiens cDNA FLJ77066 complete cds, highly similar to Homo sapiens prion protein interacting protein (PRNPIP), mRNA.
KJ903138 - Synthetic construct Homo sapiens clone ccsbBroadEn_12532 ERI3 gene, encodes complete protein.
BC156812 - Synthetic construct Homo sapiens clone IMAGE:100062500, MGC:190531 exoribonuclease 3 (ERI3) mRNA, encodes complete protein.
AB528814 - Synthetic construct DNA, clone: pF1KE0284, Homo sapiens PRNPIP gene for exoribonuclease 3, without stop codon, in Flexi system.
JD445815 - Sequence 426839 from Patent EP1572962.
JD383388 - Sequence 364412 from Patent EP1572962.
JD372676 - Sequence 353700 from Patent EP1572962.
JD428504 - Sequence 409528 from Patent EP1572962.
JD035630 - Sequence 16654 from Patent EP1572962.
JD021613 - Sequence 2637 from Patent EP1572962.
JD025789 - Sequence 6813 from Patent EP1572962.
JD030422 - Sequence 11446 from Patent EP1572962.
AK308597 - Homo sapiens cDNA, FLJ98638.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A3B3ISV9, AF007157, uc285gkx.1
UCSC ID: ENST00000649995.1
RefSeq Accession: NM_024066

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.