Track Data Hubs
 

Track data hubs are collections of external tracks that can be added to the UCSC Genome Browser. Click Connect to attach a hub and redirect to the assembly gateway page. Hub tracks will then show up in the hub's own blue bar track group under the browser graphic. For more information, including where to host your track hub, see our User's Guide.

Track Hubs are created and maintained by external sources. UCSC is not responsible for their content.

The list below can be filtered on words in the hub description pages or by assemblies.
Search terms: Assembly:
Display Hub Name Description AssembliesClick to connect and browse directly
ABC of cellular microRNAome ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
ALFA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Bird Alignment (363 species) ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] Gallus_gallus, Acanthisitta_chloris...
Bird assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_009769605.1, GCA_009769595.1...
Blueprint Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
BrainEpigenomeHub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Breast Cancer Epigenomics Track Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Breast Cancer lncRNA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: Couldn't make directory ../trash/udcCache Debug Help canFam3
C_elegans_isolates ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] CB4856Princeton_JR-contig...
CADD ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Cancer Genomics Tracks ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
CCGP ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_026170555.1, GCA_026170545.1...
CEMT (CEEHRC) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
CESAR Gene Mappings ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
Coloc segments ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Cotney Lab Human Craniofacial Epigenomics ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, mm9, hg38
Cotney Lab Human Embryonic Heart Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
COVID-19 Gene Annotation ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Croc and Bird Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
DANIO-CODE Track Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer10, danRer11
DASHR small ncRNA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
DASHR v2.0 Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
dbVar Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Dfam database of TE families and annotations ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Digital genomic footprinting (Vierstra et al., 2020) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
DNA Methylation ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] mm39, hg38, danRer11, canFam6, gorGor6, TAIR10, rn7...
ENCODE Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
ENCODE DNA Trackhub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, mm10
ENCODE integrative Trackhub ENCODE Trackhub for integrative results hg38, mm10
ENCODE RNA Trackhub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, mm10
Ensembl Regulatory Build ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19, mm10
EPD Viewer Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, mm9, mm10, danRer7, rheMac8, galGal5, rn6...
Exp/Meth VNTR hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
EyeBrowse ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, bosTau6, canFam2, cavPor3, danRer6, danRer7...
FaceBase Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9, mm10, hg18, hg19
FANTOM5 ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8, galGal5
FANTOM5 CAGE RECLU DATA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg18
Fish assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_017589495.1, GCF_000485575.1...
Fungi assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_003184765.1, GCF_001890905.1...
GENCODE Annotation Updates ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm39, mm10
GeneCards ncRNAs ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
GeneHancer ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Golden Hamster genome ERROR: Couldn't make directory ../trash/udcCache Debug Help MesAur2.0
GTEx Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
GTEx RNA-seq Signal Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
HPRC ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_018471515.1, GCA_018472595.1...
Human cellular microRNAome ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Human cellular microRNAome barCharts ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Human Global Reference Genomes ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_003601015.1_HG03807_prelim_1.0...
human p53 Binding And Expression Resource (BAER) hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
IDEAS roadmap 20states ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
IMPACT regulatory element activity ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Invertebrate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_905333045.1, GCF_000005575.2...
JASPAR TFBS ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, ce10, ce11, ci3, dm6, sacCer3, danRer10...
LIBD Human DLPFC Development ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
LNCipedia 5.2 ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Mammal and Bird Alignment (605 species) ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] Homo_sapiens, Gallus_gallus...
Mammal assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000298275.1, GCA_011750645.1...
MGI Alleles and Phenotypes ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10
miRcode microRNA sites ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
mm9.SMC1.ChIAPET ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
Mouse strain assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, SPRET_EiJ, AKR_J...
MutScore Variant Pathogenicity ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
ORF Predictions ERROR: Couldn't make directory ../trash/udcCache Debug Help wuhCor1
Peptide evidences CNIO ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Peterhof_yeasts ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] sacCer3, 1B_D1606_spades...
PhyloCSF ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, mm10, mm39, galGal4, galGal6, dm6, ce11...
PhyloCSF++ ERROR: Couldn't make directory ../trash/udcCache Debug Help rn6, fr3, gasAcu1, tarSyr2, sacCer3
Plant assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_019202715.1, GCF_016808095.1...
Polytract Repeats ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, rn6, dm6
Predominant PAS and predominant hexamers ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Primate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000951035.1, GCA_023783095.1...
Primate x4 NeuroDiff and Human CRISPRa ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, panTro4, ponAbe2, rheMac8
Principal Splice Isoforms APPRIS ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Promoterome CAGE and nucleosome positioning ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer7
PsychENCODE MPRA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Purple sea star Assembly Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help 12Jun2017_28pcJ
RefSeqFE Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help GCA_009914755.4, hg19, hg38, hs1, mm10, mm39
refTSS ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10
ReMap 2018 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
ReMap 2020 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, araTha1
ReMap 2022 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10, mm39, hg38, hg19, dm6, araTha1
rfam12_ncRNA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Roadmap Epigenomics Data Complete Collection at Wash U VizHub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Roadmap Epigenomics Integrative Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Seq-data on mm9 NS5 cells ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
SIHUMI ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] bact, bifi, blautia, anaero, ery, clostri, lacto...
singing mouse genome hub ERROR: Couldn't make directory ../trash/udcCache Debug Help steguina
Splice Site Usage Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
sunflower_sea_star ERROR: Couldn't make directory ../trash/udcCache Debug Help sunflower_sea_star
Synonymous Constraint ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, wuhCor1
T_cell_ATAC_ChIP_Pipkin ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10
TOBIAS footprint prediction ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10
Translation Initiation Sites (TIS) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
UCD Methylation ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
UCSC Repeat Browser 2020 Update ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38reps, hg19, hg38
Ultraconserved Elements ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Umap and Bismap mappability ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19, mm9, mm10
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
UniBind 2018 Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
UniBind 2021 permissive Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...
UniBind 2021 Robust Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...
UniProt Features ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Vertebrate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_003597395.1, GCA_027172095.1...
VGP primary ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_009769605.1, GCF_027172205.1...
viral assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000838645.1, GCF_000864245.1...
Vista Enhancers ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, mm9, mm10
Wasp spider hub ERROR: Couldn't make directory ../trash/udcCache Debug Help argiope
WormBase ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Xmac ERROR: Couldn't make directory ../trash/udcCache Debug Help X.maculatus
ZebrafishGenomics ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer11, danRer10, danRer7
ABC of cellular microRNAome ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
ALFA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Bird Alignment (363 species) ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] Gallus_gallus, Acanthisitta_chloris...
Bird assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_009769605.1, GCA_009769595.1...
Blueprint Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
BrainEpigenomeHub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Breast Cancer Epigenomics Track Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Breast Cancer lncRNA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Broad Improved Canine Annotation v1 ERROR: Couldn't make directory ../trash/udcCache Debug Help canFam3
C_elegans_isolates ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] CB4856Princeton_JR-contig...
CADD ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Cancer Genomics Tracks ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
CCGP ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_026170555.1, GCA_026170545.1...
CEMT (CEEHRC) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
CESAR Gene Mappings ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] bosTau7, ailMel1, allMis1, anoCar2, calJac3...
ChIP-seq data track HUBs from MSC cells from GSE79815 ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
Coloc segments ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Cotney Lab Human Craniofacial Epigenomics ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, mm9, hg38
Cotney Lab Human Embryonic Heart Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
COVID-19 Gene Annotation ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Croc and Bird Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] allMis2, Anc00, Anc01, Anc02, Anc03, Anc04, Anc06...
DANIO-CODE Track Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer10, danRer11
DASHR small ncRNA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
DASHR v2.0 Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
dbVar Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Dfam database of TE families and annotations ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Digital genomic footprinting (Vierstra et al., 2020) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
DNA Methylation ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] mm39, hg38, danRer11, canFam6, gorGor6, TAIR10, rn7...
ENCODE Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
ENCODE DNA Trackhub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, mm10
ENCODE integrative Trackhub ENCODE Trackhub for integrative results hg38, mm10
ENCODE RNA Trackhub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, mm10
Ensembl Regulatory Build ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19, mm10
EPD Viewer Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, mm9, mm10, danRer7, rheMac8, galGal5, rn6...
Exp/Meth VNTR hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
EyeBrowse ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, bosTau6, canFam2, cavPor3, danRer6, danRer7...
FaceBase Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9, mm10, hg18, hg19
FANTOM5 ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, hg19, mm9, canFam3, rn6, rheMac8, galGal5
FANTOM5 CAGE RECLU DATA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg18
Fish assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_017589495.1, GCF_000485575.1...
Fungi assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_003184765.1, GCF_001890905.1...
GENCODE Annotation Updates ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm39, mm10
GeneCards ncRNAs ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
GeneHancer ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Golden Hamster genome ERROR: Couldn't make directory ../trash/udcCache Debug Help MesAur2.0
GTEx Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
GTEx RNA-seq Signal Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
HPRC ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_018471515.1, GCA_018472595.1...
Human cellular microRNAome ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Human cellular microRNAome barCharts ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Human Global Reference Genomes ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_003601015.1_HG03807_prelim_1.0...
human p53 Binding And Expression Resource (BAER) hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
IDEAS roadmap 20states ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
IMPACT regulatory element activity ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Invertebrate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_905333045.1, GCF_000005575.2...
JASPAR TFBS ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, ce10, ce11, ci3, dm6, sacCer3, danRer10...
LIBD Human DLPFC Development ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
LNCipedia 5.2 ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Mammal and Bird Alignment (605 species) ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] Homo_sapiens, Gallus_gallus...
Mammal assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000298275.1, GCA_011750645.1...
MGI Alleles and Phenotypes ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10
miRcode microRNA sites ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
mm9.SMC1.ChIAPET ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
Mouse strain assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] mm10, rn6, 129S1_SvImJ, WSB_EiJ, SPRET_EiJ, AKR_J...
MutScore Variant Pathogenicity ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
ORF Predictions ERROR: Couldn't make directory ../trash/udcCache Debug Help wuhCor1
Peptide evidences CNIO ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Peterhof_yeasts ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] sacCer3, 1B_D1606_spades...
PhyloCSF ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg38, mm10, mm39, galGal4, galGal6, dm6, ce11...
PhyloCSF++ ERROR: Couldn't make directory ../trash/udcCache Debug Help rn6, fr3, gasAcu1, tarSyr2, sacCer3
Plant assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_019202715.1, GCF_016808095.1...
Polytract Repeats ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, rn6, dm6
Predominant PAS and predominant hexamers ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19
Primate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000951035.1, GCA_023783095.1...
Primate x4 NeuroDiff and Human CRISPRa ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, panTro4, ponAbe2, rheMac8
Principal Splice Isoforms APPRIS ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, hg19, mm10, danRer10, rn6, susScr3, panTro4, dm6...
Promoterome CAGE and nucleosome positioning ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer7
PsychENCODE MPRA Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Purple sea star Assembly Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help 12Jun2017_28pcJ
RefSeqFE Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help GCA_009914755.4, hg19, hg38, hs1, mm10, mm39
refTSS ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10
ReMap 2018 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
ReMap 2020 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, araTha1
ReMap 2022 Regulatory Atlas ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10, mm39, hg38, hg19, dm6, araTha1
rfam12_ncRNA ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10, ce10, galGal4, ci2, danRer7, dm6, sacCer3
Roadmap Epigenomics Data Complete Collection at Wash U VizHub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38
Roadmap Epigenomics Integrative Analysis Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Seq-data on mm9 NS5 cells ERROR: Couldn't make directory ../trash/udcCache Debug Help mm9
SIHUMI ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] bact, bifi, blautia, anaero, ery, clostri, lacto...
singing mouse genome hub ERROR: Couldn't make directory ../trash/udcCache Debug Help steguina
Splice Site Usage Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
sunflower_sea_star ERROR: Couldn't make directory ../trash/udcCache Debug Help sunflower_sea_star
Synonymous Constraint ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, hg38, wuhCor1
T_cell_ATAC_ChIP_Pipkin ERROR: Couldn't make directory ../trash/udcCache Debug Help mm10
TOBIAS footprint prediction ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, mm10
Translation Initiation Sites (TIS) ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
UCD Methylation ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg19, hg18, mm10, mm9, bosTau7, bosTau6, canFam3...
UCSC Repeat Browser 2020 Update ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38reps, hg19, hg38
Ultraconserved Elements ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19
Umap and Bismap mappability ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38, hg19, mm9, mm10
UMassMed ZHub ERROR: Couldn't open http://zlab-trackhub.umassmed.edu/shulhah/hub.txt Debug Help hg19
UniBind 2018 Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
UniBind 2021 permissive Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, mm10, ce11, dm6, danRer11, spo2, sacCer3, rn6...
UniBind 2021 Robust Hub ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] hg38, mm10, ce11, dm6, danRer11, sacCer3, rn6, araTha1...
UniProt Features ERROR: Couldn't make directory ../trash/udcCache Debug Help hg38
Vertebrate assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_003597395.1, GCA_027172095.1...
VGP primary ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCA_009769605.1, GCF_027172205.1...
viral assemblies ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] GCF_000838645.1, GCF_000864245.1...
Vista Enhancers ERROR: Couldn't make directory ../trash/udcCache Debug Help hg19, mm9, mm10
Wasp spider hub ERROR: Couldn't make directory ../trash/udcCache Debug Help argiope
WormBase ERROR: Couldn't make directory ../trash/udcCache Debug Help [+] brenneri, japonica, remanei, ovolvulus, briggsae...
Xmac ERROR: Couldn't make directory ../trash/udcCache Debug Help X.maculatus
ZebrafishGenomics ERROR: Couldn't make directory ../trash/udcCache Debug Help danRer11, danRer10, danRer7

Enter hub URLs below to connect hubs. Hubs connected this way are not accessible to other users by default.

If you wish to share your hub you can create a session link. First, connect the hub and configure the tracks image as desired, then navigate to My Sessions (My Data > My Sessions). The resulting stable link can be added to publications and shared freely. You, as the author, also have the power to update the session contents freely. Alternatively, you may build a link with the hub URL to allow users to retain their browser configuration, connected hubs, and custom tracks.

See our public hub guidelines for information on submitting a new public hub.

No connected track or assembly hubs.

To connect a hub:

  • Enter its URL into the input box above and click 'Add Hub'.
  • Alternatively, you can go to the 'Public Hubs' tab on this page and connect one of the hubs that were submitted to us.
  • Another way to connect to hubs is via a direct connection link copied using the copy icon, shown on this page, when a hub is connected.
  • You can also connect to hub by following a short link to a saved session, created though the menu 'My Data > My Sessions', if the Genome Browser had connected hubs when the session was saved.

Create your own hub

For information on making track hubs, see the following pages:
You may also contact us if you have any issues or questions on hub development.

Check a hub for errors

  Load Example URL
Use the URL bar above to check a hub for errors. This will validate the hub's configuration files, including hub.txt, genomes.txt and trackDb.txt. It will also present a hierarchical tree of tracks with any errors in red. A hub with no errors still shows the tree which can be used to explore the track hierarchy. Hub error checking will always refresh the files and never use our remote file cache (see below).

Enable Genome Browser debugging modes

These apply to all connected hubs. By default, caching is activated and track load times are not shown, but you can change these settings while developing your hub:
File caching: ON  
Current setting: Always cache contents at UCSC. This means that data access is faster, but you cannot see the effect of changes to your files on the Genome Browser for at least 5 minutes.
For custom tracks, this affects only the remote formats (bigBed, bigWig, VCF+tabix, BAM, CRAM, bigPsl, HiC, etc), not text files (BED, VCF, PSL, etc), which are stored at UCSC.
Show load times: OFF  
Current setting: Show no timing measurements.