Public Sessions
 

Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.

See the Sessions User's Guide for more information.

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Screenshot Session Properties Creation Date Use Count
Description: ChIP-seq, ATAC-seq, and RNA-seq count data from sorted porcine myeloid cells in duplicate.
Author: rcorbett
Session Name: susScr11.1_Myeloid_ChIP_ATAC
Genome Assembly: susScr11
Creation Date: 2022-05-06
Views: 28
1651824000 28
Description:
Author: nannanzhao
Session Name: terc-ko
Genome Assembly: mm10
Creation Date: 2022-04-11
Views: 31
1649664000 31
Description:
Author: davem
Session Name: midterm
Genome Assembly: hg38
Creation Date: 2022-04-06
Views: 22
1649232000 22
Description:
Author: ZC
Session Name: ATAC
Genome Assembly: hg38
Creation Date: 2022-03-25
Views: 28
1648195200 28
Description:
Author: EsterCastillo
Session Name: Paneles_VHIO_bed
Genome Assembly: hg19
Creation Date: 2022-03-25
Views: 29
1648195200 29
Description: This session shows a short match on the UTR sequence for a gene, acugcugagcugggag. If you click below the black box, into the gene page for TGDS, you can then click an "RNA Structure" link. This will bring you to a section where you can then see for the 5' UTR a "Picture" link and see how this RNA fold structure may arrange.
Author: QAtester
Session Name: RNA_plot
Genome Assembly: hg38
Creation Date: 2022-05-03
Views: 11
1651564800 11
Description: Review in this mailing list question, https://groups.google.com/a/soe.ucsc.edu/g/genome/c/y3evkDazY2o/m/0WjoQD63BQAJ, the "How to start from scratch to find tracks" and "How to view data in the region of interest and adjust display" sections and instead of using hg38 go to "GRCm38/mm10" and then use "TF" in the track search step. Set the "JASPAR Transcription Factors" track on mm10 to "pack" and then search "Mef2C" and select "Mef2c (ENSMUST00000198199.4) at chr13:83504034-83663343" from the search results, and then zoom out "1.5x" as well. Next click into the grey box for the "JASPAR Transcription Factors Track Settings" and click the "Schema" link on the far right. By clicking the Schema link you will see the fields for the "Primary Table: jaspar2022" and from this page you can use the Tools menu to arrive at the Table Browser, so this table will be automatically selected for you. Here click the "create" button next to "filter:" and for the "score is" field set it from "ignored" to ">" for greater than and put in a value such as 700 and then click submit. Then put in the "output filename:" field a name like "mm10Jaspar_Mef2c_score700.csv" and be sure that you click the button next to "csv (for excel)" and then click "get output" to download the results. Open the resulting file in Excel.
Author: brianlee
Session Name: Shiaoching
Genome Assembly: mm10
Creation Date: 2022-03-16
Views: 35
1647417600 35
Description:
Author: Jcotney
Session Name: Human HOXA LCR
Genome Assembly: hg19
Creation Date: 2017-05-24
Views: 214
1495612800 214
Description:
Author: hy123
Session Name: hg38 heart 1
Genome Assembly: hg38
Creation Date: 2022-03-07
Views: 28
1646640000 28
Description:
Author: cfausto
Session Name: mm10-sim2
Genome Assembly: mm10
Creation Date: 2022-03-04
Views: 39
1646380800 39
Description:
Author: asaenz.13
Session Name: Genomics group 7 - final project
Genome Assembly: hg19
Creation Date: 2022-03-04
Views: 44
1646380800 44
Description:
Author: cfausto
Session Name: mm10-ctnnb-lef1-chir
Genome Assembly: mm10
Creation Date: 2022-03-02
Views: 42
1646208000 42
Description:
Author: cfausto
Session Name: mm10_chip-betacat_test
Genome Assembly: mm10
Creation Date: 2022-03-02
Views: 38
1646208000 38
Description:
Author: YKehayova
Session Name: hg19 ATAC-seq 01.03.22
Genome Assembly: hg19
Creation Date: 2022-03-01
Views: 50
1646121600 50
Description:
Author: aytyuh
Session Name: new
Genome Assembly: mm10
Creation Date: 2022-02-16
Views: 46
1644998400 46
Description:
Author: JFormosa
Session Name: 2-15-22 Hwk6pt1
Genome Assembly: hg19
Creation Date: 2022-02-15
Views: 40
1644912000 40
Description:
Author: Chilliard
Session Name: hg19 - assignment 5
Genome Assembly: hg19
Creation Date: 2022-02-15
Views: 117
1644912000 117
Description:
Author: JFormosa
Session Name: 2-14-22 Hwk 5
Genome Assembly: hg19
Creation Date: 2022-02-14
Views: 40
1644825600 40
Description:
Author: himtiffant
Session Name: p1 t1
Genome Assembly: mm10
Creation Date: 2022-02-09
Views: 50
1644393600 50
Description:
Author: helenajara10
Session Name: mm10w/ Dock6
Genome Assembly: mm10
Creation Date: 2022-02-09
Views: 40
1644393600 40
Description:
Author: aytyuh
Session Name: task 1
Genome Assembly: mm10
Creation Date: 2022-02-09
Views: 43
1644393600 43
Description:
Author: helenajara10
Session Name: mm10w/interaction
Genome Assembly: mm10
Creation Date: 2022-02-09
Views: 42
1644393600 42
Description:
Author: Jcotney
Session Name: TFAP2_Enhancer_KO_Session
Genome Assembly: hg38
Creation Date: 2022-02-08
Views: 62
1644307200 62
Description:
Author: chunmei1991
Session Name: ChIPseq_peak_profile_Weilab
Genome Assembly: hg19
Creation Date: 2022-02-06
Views: 61
1644134400 61
Description:
Author: chunmei1991
Session Name: hg19_ChIPseq_data
Genome Assembly: hg19
Creation Date: 2022-02-06
Views: 41
1644134400 41
Description: The genes HBB and HBD are both expressed in red blood cells, but HBB is also expressed in many other tissues, whereas HBD is expressed in red cells almost exclusively.
Author: helenajara10
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2022-02-03
Views: 53
1643875200 53
Description:
Author: Kaushik
Session Name: PHOX2B
Genome Assembly: hg18
Creation Date: 2022-02-05
Views: 37
1644048000 37
Description:
Author: pwjeffries
Session Name: hg38Covert
Genome Assembly: hg38
Creation Date: 2022-02-02
Views: 49
1643788800 49
Description:
Author: katerynamarku
Session Name: Fall19 Yeast test (KM)
Genome Assembly: sacCer3
Creation Date: 2022-01-31
Views: 47
1643616000 47
Description:
Author: pham4tt
Session Name: Spring20 Yeat Test TM,KM,EL
Genome Assembly: sacCer3
Creation Date: 2022-01-31
Views: 47
1643616000 47
Description:
Author: tomgo
Session Name: mm10- enhancers
Genome Assembly: mm10
Creation Date: 2022-01-31
Views: 43
1643616000 43
Description:
Author: jos200a
Session Name: Fall 2022 Yeast Test JEAA
Genome Assembly: sacCer3
Creation Date: 2022-01-30
Views: 43
1643529600 43
Description:
Author: Cliffford081915
Session Name: Spring2022 Yeast Test(JDC)
Genome Assembly: sacCer3
Creation Date: 2022-01-30
Views: 40
1643529600 40
Description:
Author: garberla
Session Name: CGEMS yeast LG test
Genome Assembly: sacCer3
Creation Date: 2022-01-26
Views: 43
1643184000 43
Description:
Author: ajaycox
Session Name: CGEMS yeast (AJ) test
Genome Assembly: sacCer3
Creation Date: 2022-01-26
Views: 41
1643184000 41
Description:
Author: espinokb
Session Name: CGEMS yeast KE test
Genome Assembly: sacCer3
Creation Date: 2022-01-26
Views: 47
1643184000 47
Description:
Author: CherryLab
Session Name: Nuclear_EyeBrowser_TrackHub
Genome Assembly: hg38
Creation Date: 2021-11-01
Views: 145
1635753600 145
Description:
Author: aytyuh
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2022-02-09
Views: 53
1644393600 53
Description:
Author: YKehayova
Session Name: hg19 SBNO1 project
Genome Assembly: hg19
Creation Date: 2022-01-20
Views: 81
1642665600 81
Description:
Author: Pey.davoodi
Session Name: Optional
Genome Assembly: hg19
Creation Date: 2022-02-07
Views: 38
1644220800 38
Description:
Author: Pey.davoodi
Session Name: 4-genes-workshop
Genome Assembly: hg19
Creation Date: 2022-02-07
Views: 40
1644220800 40
Description: Chromatin state prediction from sorted porcine immune cells, performed as part of the US Pig FAANG project
Author: rcorbett
Session Name: susScr11_ImmuneCell_Chromatin_States
Genome Assembly: susScr11
Creation Date: 2022-03-06
Views: 37
1646553600 37
Description:
Author: YKehayova
Session Name: hg19 ATAC peaks COLGALT2 promoter
Genome Assembly: hg19
Creation Date: 2022-01-19
Views: 53
1642579200 53
Description: ChIP, ATAC, and RNA-seq counts for sorted porcine myeloid cells in duplicate, along with H3K27ac and H3K4me3 data from other cell types for comparison.
Author: rcorbett
Session Name: susScr11_Myeloid_ChIP_ATAC_comparison
Genome Assembly: susScr11
Creation Date: 2022-05-06
Views: 12
1651824000 12
Description:
Author: dxliucmu
Session Name: hg38_ ChIP with H3K4me1 in HC vs SCZ (one pair))
Genome Assembly: hg38
Creation Date: 2022-01-09
Views: 63
1641715200 63
Description:
Author: JFormosa
Session Name: Hwk6Pt1
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 33
1645516800 33
Description: UCLA 2022 workshop -- custom tracks Alus from dbRIP not in rmsk; CAT gene with two names, some SNPs from 151 missense and intron
Author: Example
Session Name: hg19_snp_CAT_Alus
Genome Assembly: hg19
Creation Date: 2022-01-20
Views: 48
1642665600 48
Description:
Author: ani_davis
Session Name: Spring22 Yeast Test AND
Genome Assembly: sacCer3
Creation Date: 2022-01-31
Views: 38
1643616000 38
Description: IPMK intron Author: Mustafi P Session Name: ATAC-seqPC4 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq6
Genome Assembly: hg19
Creation Date: 2021-12-25
Views: 85
1640419200 85
Description: ATG5 intron Author: Mustafi P Session Name: ATAC-seqPC4 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq4
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 97
1640246400 97
Description: MAP3K7 intron Author: Mustafi P Session Name: ATAC-seq2 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq2
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 84
1640246400 84
Description: UVRAG promoter-TSS Author: Mustafi P Session Name: ATAC-seqPC4 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq1
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 119
1640246400 119
Description: IPMK intron Author: Mustafi P Session Name: ATAC-seqPC4 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq PC4
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 108
1640246400 108
Description: IPMK intron Author: Mustafi P Session Name: ATAC-seq5 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq5
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 89
1640246400 89
Description: YEATS2 intron TSS Author: Mustafi P Session Name: ATAC-seq3 Genome Assembly: hg19
Author: pallabidgp123
Session Name: ATAC-seq3
Genome Assembly: hg19
Creation Date: 2021-12-23
Views: 78
1640246400 78
Description: Visualization of the BRCA1 Gene, CpG islands and DNA methylations in different cell lines using the bisulfite Seq and Methyl 450k method.
Author: art_03m
Session Name: hg19: Methylation & CpG islands in BRCA1 gene
Genome Assembly: hg19
Creation Date: 2021-12-18
Views: 59
1639814400 59
Description:
Author: adelaidetovar
Session Name: apoa2
Genome Assembly: hg38
Creation Date: 2021-12-13
Views: 74
1639382400 74
Description:
Author: SKellaway
Session Name: dnFOSforSNPs
Genome Assembly: hg38
Creation Date: 2021-12-08
Views: 74
1638950400 74
Description:
Author: Schne2lk
Session Name: hg38 NRL multiomics
Genome Assembly: hg38
Creation Date: 2021-12-07
Views: 68
1638864000 68
Description:
Author: marielgr
Session Name: ACSS2_ChIPseq
Genome Assembly: mm39
Creation Date: 2021-12-17
Views: 51
1639728000 51
Description: Aging MapR data in photoreceptor neurons. Loaded bigwig track correspond to the averaged signal for each aging time point generated from three independent biological replicates
Author: juanjaureguilozano
Session Name: dm6_agingMapR
Genome Assembly: dm6
Creation Date: 2021-12-01
Views: 87
1638345600 87
Description: A pipeline for predicting cardiac gene network components using cis-regulatory elements (CREs) Manuscript: Hieu T. Nim*, Louis Dang*, Harshini Thiyagarajah*, Daniel Bakopoulos, Michael See, Natalie Charitakis, Tennille Sibbritt, Michael P. Eichenlaub, Stuart K. Archer, Nicolas Fossat, Richard E. Burke, Patrick P. L. Tam, Coral G. Warr‡, Travis K. Johnson‡#, Mirana Ramialison‡#. "Predicting genes essential for heart development irrespective of their spatial expression pattern". Genome Biology (in press). (*: co-first authors; ‡: co-senior authors; #: corresponding authors)
Author: nimt0001
Session Name: CardiacNetworkComponentPredictor
Genome Assembly: mm9
Creation Date: 2021-11-30
Views: 135
1638259200 135
Description:
Author: latimeaa
Session Name: Hg38 HISAT2 Retina tracks
Genome Assembly: hg38
Creation Date: 2021-11-30
Views: 89
1638259200 89
Description:
Author: Eldar
Session Name: SNV
Genome Assembly: hg38
Creation Date: 2021-02-16
Views: 335
1613462400 335
Description:
Author: Eldar
Session Name: CNV
Genome Assembly: hg38
Creation Date: 2021-02-25
Views: 157
1614240000 157
Description:
Author: aigul
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-11-18
Views: 100
1637222400 100
Description:
Author: Wen-Cheng
Session Name: Liver_APOA5p
Genome Assembly: hg19
Creation Date: 2020-11-04
Views: 441
1604476800 441
Description:
Author: zunpengliu66
Session Name: WT H3K9me3 ChIP-seq
Genome Assembly: hg38
Creation Date: 2021-11-11
Views: 101
1636617600 101
Description:
Author: randa2jl
Session Name: Human retina multiomics
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 94
1637049600 94
Description:
Author: young_researcher
Session Name: hg19_intersection
Genome Assembly: hg19
Creation Date: 2021-11-07
Views: 112
1636272000 112
Description:
Author: young_researcher
Session Name: hg19_H3F3A
Genome Assembly: hg19
Creation Date: 2021-11-07
Views: 91
1636272000 91
Description:
Author: vladislav
Session Name: intersect_with_DeepZ
Genome Assembly: hg19
Creation Date: 2021-11-06
Views: 91
1636185600 91
Description:
Author: vladislav
Session Name: H3F3A.merge
Genome Assembly: hg19
Creation Date: 2021-11-06
Views: 93
1636185600 93
Description:
Author: vladislav
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-11-06
Views: 86
1636185600 86
Description:
Author: megallegos
Session Name: Independent Project Link
Genome Assembly: hg19
Creation Date: 2021-11-05
Views: 223
1636099200 223
Description:
Author: randa2jl
Session Name: PDE6A
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 92
1636012800 92
Description:
Author: Schne2lk
Session Name: mm9 RCVRN
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 96
1636012800 96
Description:
Author: Schne2lk
Session Name: mm9 HTT
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 393
1636012800 393
Description:
Author: Schne2lk
Session Name: mm9 thrb
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 95
1636012800 95
Description:
Author: randa2jl
Session Name: wt/nrl CBRs
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 443
1636012800 443
Description:
Author: laarne
Session Name: CHIP SEQ ACTUAL SESSION CBR
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 93
1636012800 93
Description:
Author: Schne2lk
Session Name: mm9 PDE6A
Genome Assembly: mm9
Creation Date: 2021-11-04
Views: 98
1636012800 98
Description:
Author: adityabhagwate
Session Name: bw_upload
Genome Assembly: hg19
Creation Date: 2021-11-03
Views: 109
1635926400 109
Description:
Author: ashleywilkins
Session Name: DSP
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 98
1635840000 98
Description:
Author: sweatbr
Session Name: MYBPC1
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 92
1635840000 92
Description:
Author: sweatbr
Session Name: DSP
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 90
1635840000 90
Description:
Author: randa2jl
Session Name: MYBPC1
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 91
1635840000 91
Description:
Author: ashleywilkins
Session Name: Cardiomyopathy
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 95
1635840000 95
Description:
Author: Schne2lk
Session Name: hg19 DSP
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 91
1635840000 91
Description:
Author: randa2jl
Session Name: hg19-RHO custom track
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 91
1635840000 91
Description:
Author: Schne2lk
Session Name: hg19 MYBPC1
Genome Assembly: hg19
Creation Date: 2021-11-02
Views: 95
1635840000 95
Description:
Author: sweatbr
Session Name: RIDLEY
Genome Assembly: hg38
Creation Date: 2021-11-04
Views: 89
1636012800 89
Description:
Author: randa2jl
Session Name: Fall21 HTT gene Huntingtons
Genome Assembly: hg38
Creation Date: 2021-10-19
Views: 109
1634630400 109
Description:
Author: Schne2lk
Session Name: hg38 HTT
Genome Assembly: hg38
Creation Date: 2021-10-19
Views: 98
1634630400 98
Description:
Author: whaleycn
Session Name: HTT
Genome Assembly: hg38
Creation Date: 2021-10-19
Views: 105
1634630400 105
Description:
Author: JuliaLaz
Session Name: HTT
Genome Assembly: hg38
Creation Date: 2021-10-18
Views: 100
1634544000 100
Description:
Author: ashleywilkins
Session Name: hg38 HTT GENE
Genome Assembly: hg38
Creation Date: 2021-10-17
Views: 327
1634457600 327
Description:
Author: CherryLab
Session Name: VISIONS_TrackHub
Genome Assembly: hg38
Creation Date: 2021-10-15
Views: 149
1634284800 149
Description:
Author: yoni.arndt
Session Name: ex.1 RAC1
Genome Assembly: hg38
Creation Date: 2021-10-15
Views: 87
1634284800 87
Description:
Author: randa2jl
Session Name: Fall21 HGD gene
Genome Assembly: hg38
Creation Date: 2021-10-14
Views: 97
1634198400 97
Description:
Author: psamchristine
Session Name: ATF1 ChIP-seq
Genome Assembly: hg38
Creation Date: 2021-10-13
Views: 104
1634112000 104
Description:
Author: sweatbr
Session Name: chr3chimp
Genome Assembly: hg38
Creation Date: 2021-10-12
Views: 251
1634025600 251
Description:
Author: randa2jl
Session Name: Fall21 HumanChr2 JennaRandall
Genome Assembly: hg38
Creation Date: 2021-10-12
Views: 246
1634025600 246
Description:
Author: JFormosa
Session Name: Hwk6Pt4b
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 38
1645516800 38
Description:
Author: JFormosa
Session Name: Hwk6Pt4a
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 37
1645516800 37
Description:
Author: mjliddi16
Session Name: hg19_assignment6
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 165
1645516800 165
Description:
Author: tboisjol
Session Name: TB-98358724-MEDG580-UBC-2020
Genome Assembly: hg38
Creation Date: 2021-10-08
Views: 283
1633680000 283
Description:
Author: millerh1@livemail.uthscsa.edu
Session Name: RLBase
Genome Assembly: hg38
Creation Date: 2021-10-06
Views: 459
1633507200 459
Description:
Author: millerh1@livemail.uthscsa.edu
Session Name: RLBase_slow
Genome Assembly: hg38
Creation Date: 2021-10-05
Views: 297
1633420800 297
Description:
Author: kkaczor
Session Name: tamer_hiv_atac
Genome Assembly: hg38
Creation Date: 2021-09-30
Views: 284
1632988800 284
Description:
Author: kkaczor
Session Name: tamer_hiv_rna
Genome Assembly: hg38
Creation Date: 2021-09-29
Views: 282
1632902400 282
Description:
Author: laarne
Session Name: hg38 HTT gene
Genome Assembly: hg38
Creation Date: 2021-10-19
Views: 92
1634630400 92
Description:
Author: areynolds
Session Name: hg38 HBB-LCR
Genome Assembly: hg38
Creation Date: 2021-09-20
Views: 269
1632124800 269
Description:
Author: jschlachetzki
Session Name: 20210917_4DBSM_Schlachetzki
Genome Assembly: hg19
Creation Date: 2021-09-17
Views: 59
1631865600 59
Description:
Author: layla13
Session Name: TSA2R38 Group #4
Genome Assembly: hg19
Creation Date: 2021-09-16
Views: 256
1631779200 256
Description:
Author: Thijs
Session Name: Wnt_human_NGS_20210914_V2
Genome Assembly: hg38
Creation Date: 2021-09-14
Views: 286
1631606400 286
Description:
Author: mallorycunningham
Session Name: TASR38 group3
Genome Assembly: hg19
Creation Date: 2021-09-12
Views: 272
1631433600 272
Description:
Author: noycohen
Session Name: HepG2 and K562 Methylation
Genome Assembly: hg38
Creation Date: 2021-09-12
Views: 288
1631433600 288
Description:
Author: msadams
Session Name: A549
Genome Assembly: hg38
Creation Date: 2021-09-28
Views: 88
1632816000 88
Description:
Author: xuxing
Session Name: multi-Paired-seq
Genome Assembly: hg38
Creation Date: 2021-10-31
Views: 109
1635667200 109
Description:
Author: jessicagarth
Session Name: TAS2R38 group4
Genome Assembly: hg19
Creation Date: 2021-09-08
Views: 278
1631088000 278
Description:
Author: hayes22
Session Name: Fall21 Yeast Test JEH
Genome Assembly: sacCer3
Creation Date: 2021-09-08
Views: 278
1631088000 278
Description:
Author: SamanthaBusch
Session Name: Fall21 Yeast test SIB
Genome Assembly: sacCer3
Creation Date: 2021-09-07
Views: 270
1631001600 270
Description:
Author: Siddeldj
Session Name: Fall19 yeast test DJS
Genome Assembly: sacCer3
Creation Date: 2021-09-07
Views: 280
1631001600 280
Description:
Author: Albert Cheng
Session Name: hg38_ZFP18_1
Genome Assembly: hg38
Creation Date: 2021-09-07
Views: 275
1631001600 275
Description:
Author: Albert Cheng
Session Name: hg38_Cas9_1_0_0_0
Genome Assembly: hg38
Creation Date: 2021-09-07
Views: 286
1631001600 286
Description:
Author: Albert Cheng
Session Name: hg38_ZFP18_1_0
Genome Assembly: hg38
Creation Date: 2021-09-07
Views: 281
1631001600 281
Description:
Author: Albert Cheng
Session Name: hg38_ZFP18_1_0_0
Genome Assembly: hg38
Creation Date: 2021-09-07
Views: 289
1631001600 289
Description:
Author: JuliaLaz
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2021-09-07
Views: 273
1631001600 273
Description:
Author: AbigailLambert
Session Name: Fall19 Yeast test AML
Genome Assembly: sacCer3
Creation Date: 2021-09-12
Views: 263
1631433600 263
Description:
Author: layla13
Session Name: Fall21 Yeast test LA
Genome Assembly: sacCer3
Creation Date: 2021-09-05
Views: 269
1630828800 269
Description:
Author: gucascau
Session Name: H3-3-2
Genome Assembly: mm10
Creation Date: 2021-09-03
Views: 276
1630656000 276
Description:
Author: mallorycunningham
Session Name: Fall21 Yeast Test MC
Genome Assembly: sacCer3
Creation Date: 2021-09-03
Views: 260
1630656000 260
Description:
Author: jessicagarth
Session Name: CGEMS yeast JMG test
Genome Assembly: sacCer3
Creation Date: 2021-09-02
Views: 277
1630569600 277
Description:
Author: JuliaLaz
Session Name: Fall21 Worm test group#4
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 268
1630569600 268
Description:
Author: latimeaa
Session Name: CGEMS Worm AAL test
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 256
1630569600 256
Description:
Author: latimeaa
Session Name: Fall21 Worm test group#4
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 261
1630569600 261
Description:
Author: aazari99
Session Name: CGEMS Worm AA Test
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 273
1630569600 273
Description:
Author: aazari99
Session Name: Fall21 Worm test group#3
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 274
1630569600 274
Description:
Author: Schne2lk
Session Name: Fall21 Worm test group#3
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 275
1630569600 275
Description:
Author: laarne
Session Name: CGEMS worm LAN test
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 276
1630569600 276
Description:
Author: whaleycn
Session Name: Fall21 Mouse Test Group(6)
Genome Assembly: mm9
Creation Date: 2021-09-02
Views: 282
1630569600 282
Description:
Author: ashleywilkins
Session Name: Fall21 Worm test group #4
Genome Assembly: ce11
Creation Date: 2021-09-02
Views: 272
1630569600 272
Description:
Author: randa2jl
Session Name: Fall21 Yeast Test Group 1
Genome Assembly: sacCer3
Creation Date: 2021-09-02
Views: 260
1630569600 260
Description:
Author: asinerbc
Session Name: FAll21 Yeast test group 2
Genome Assembly: sacCer3
Creation Date: 2021-09-02
Views: 270
1630569600 270
Description:
Author: AHRImmunity
Session Name: stockingerg_ATACSEQ
Genome Assembly: mm10
Creation Date: 2021-09-01
Views: 282
1630483200 282
Description:
Author: AHRImmunity
Session Name: stockingerg_CHIPSEQ
Genome Assembly: mm10
Creation Date: 2021-09-01
Views: 282
1630483200 282
Description:
Author: Eldar
Session Name: gene level
Genome Assembly: hg38
Creation Date: 2021-08-27
Views: 311
1630051200 311
Description:
Author: aytyuh
Session Name: newnew
Genome Assembly: mm10
Creation Date: 2022-02-16
Views: 61
1644998400 61
Description:
Author: ssdhar
Session Name: hg19 Pim1 Bc
Genome Assembly: hg19
Creation Date: 2021-08-25
Views: 319
1629878400 319
Description:
Author: zxtzhangqian
Session Name: Lamprey_WGBS
Genome Assembly: petMar3
Creation Date: 2021-08-25
Views: 271
1629878400 271
Description:
Author: schmi4am
Session Name: Fall19 Yeast test AMS
Genome Assembly: sacCer3
Creation Date: 2021-09-05
Views: 264
1630828800 264
Description:
Author: ssdhar
Session Name: hg19 mmp11 bc
Genome Assembly: hg19
Creation Date: 2021-08-17
Views: 278
1629187200 278
Description:
Author: ssdhar
Session Name: hg19 new H3k27 ac six1
Genome Assembly: hg19
Creation Date: 2021-08-17
Views: 265
1629187200 265
Description:
Author: lyj
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-08-15
Views: 274
1629014400 274
Description:
Author: lyj
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-08-15
Views: 278
1629014400 278
Description: H3K27ac ChIP-seq count data from A375 melanoma in response to medium-chain fatty acid (octanoate) administration.
Author: thuang316
Session Name: H3K27ac_ChIP_seq_octanoate
Genome Assembly: hg38
Creation Date: 2021-08-15
Views: 54
1629014400 54
Description: ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to <a href="http://remap2022.univ-amu.fr">ReMap2022</a> for more info.
Author: Benoit Ballester
Session Name: US_hg38_ReMap2022
Genome Assembly: hg38
Creation Date: 2021-08-11
Views: 783
1628668800 783
Description: ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to <a href="http://remap2022.univ-amu.fr">ReMap2022</a> for more info.
Author: Benoit Ballester
Session Name: US_mm10_ReMap2022
Genome Assembly: mm10
Creation Date: 2021-08-11
Views: 428
1628668800 428
Description: ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to <a href="http://remap2022.univ-amu.fr">ReMap2022</a> for more info.
Author: Benoit Ballester
Session Name: US_dm6_ReMap2022
Genome Assembly: dm6
Creation Date: 2021-08-11
Views: 374
1628668800 374
Description: ReMap 2022: A database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments Go to <a href="http://remap2022.univ-amu.fr">ReMap2022</a> for more info.
Author: Benoit Ballester
Session Name: US_araTha1_ReMap2022
Genome Assembly: hub_2961057_araTha1
Creation Date: 2021-08-11
Views: 456
1628668800 456
Description: This session uses Times font.
Author: brianlee
Session Name: Times_Font
Genome Assembly: hg38
Creation Date: 2021-08-10
Views: 1143
1628582400 1143
Description: A Public Session using the Avant Guard Font.
Author: brianlee
Session Name: AvantG_Font
Genome Assembly: hg19
Creation Date: 2021-08-10
Views: 475
1628582400 475
Description: 4931406C07Rik Transcripts
Author: szaman2
Session Name: 4931406C07Rik
Genome Assembly: mm10
Creation Date: 2021-08-10
Views: 270
1628582400 270
Description:
Author: jamesli
Session Name: RNA_ATAC_Cerebellum1
Genome Assembly: mm10
Creation Date: 2021-08-06
Views: 47
1628236800 47
Description:
Author: gucascau
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-08-05
Views: 301
1628150400 301
Description: The genes HBB and HBD are both expressed in red blood cells, but HBB is also expressed in many other tissues, whereas HBD is expressed in red cells alomst exclusively.
Author: EJ
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2021-08-03
Views: 308
1627977600 308
Description:
Author: gonzalezvl
Session Name: pha_v1_ncbi
Genome Assembly: hub_2958085_pha_v1_ncbi
Creation Date: 2021-08-02
Views: 331
1627891200 331
Description:
Author: nkfarah
Session Name: snATAC_cerebellum_E12_14
Genome Assembly: mm10
Creation Date: 2021-07-27
Views: 314
1627372800 314
Description: The gene HBB and HBD are both expressed in red blood cells, but HBB is also expressed in many other tissues, where as HBD is expressed in red cells almost exclusively.
Author: mw1278
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2021-08-31
Views: 265
1630396800 265
Description: This session has Times font selected and italic styling applied, available from the Genome Browser menu -> Configure page (or "c f" shortcut).
Author: PublicSessions
Session Name: Drosophila Duplication with font
Genome Assembly: dm6
Creation Date: 2021-07-21
Views: 298
1626854400 298
Description:
Author: jmorlan66
Session Name: PFS_session8
Genome Assembly: hg38
Creation Date: 2021-07-20
Views: 278
1626768000 278
Description:
Author: Hanson258
Session Name: H3K27me3_myoblast
Genome Assembly: hg38
Creation Date: 2021-07-16
Views: 294
1626422400 294
Description:
Author: megallegos
Session Name: Biol 310: Module 4: Mutational Analysis
Genome Assembly: hg38
Creation Date: 2019-07-19
Views: 2583
1563523200 2583
Description:
Author: Jinkil_Jeong
Session Name: Shig_Ad
Genome Assembly: hg19
Creation Date: 2021-07-07
Views: 315
1625644800 315
Description:
Author: MatthewMurry
Session Name: danRer11
Genome Assembly: danRer11
Creation Date: 2021-07-07
Views: 297
1625644800 297
Description:
Author: smorabito
Session Name: AD_snATAC
Genome Assembly: hg38
Creation Date: 2021-07-07
Views: 420
1625644800 420
Description: Human HOX 11 gene mapped on the positive RLFS readings in the bed file.
Author: arazavi1
Session Name: HOX
Genome Assembly: hg19
Creation Date: 2021-07-07
Views: 299
1625644800 299
Description: This variant affecting Type 1 collagen is identified as a genetic basis for classical EDS and vascular EDS from this source: https://www.ehlers-danlos.com/eds-types/ This session displays SNV clinically oriented annotation tracks at this locus. A paper describing these tracks and the feature that launches them, "Variant Interpretation: UCSC Genome Browser Recommended Track Sets" is in press (pre-print here: https://www.authorea.com/users/423801/articles/529043-variant-interpretation-ucsc-genome-browser-recommended-track-sets)
Author: Kate
Session Name: Ehlers-Danlos Syndrome COL5A1 variant locus (c.934C>T)
Genome Assembly: hg19
Creation Date: 2021-07-08
Views: 295
1625731200 295
Description:
Author: Albert Cheng
Session Name: hg38_JACKIE
Genome Assembly: hg38
Creation Date: 2021-07-01
Views: 298
1625126400 298
Description:
Author: Albert Cheng
Session Name: mm10_JACKIE
Genome Assembly: mm10
Creation Date: 2021-07-01
Views: 305
1625126400 305
Description: A picture of an assembly hub for Zebu cattle where the current DNA in the region has been sent to the External Tool RSAT Metazoa which discovered a motif, aaacttatagata, within the region. The motif was then highlighted with the Short Match track. The session shows how building assembly hubs enables interoperability with tools beyond the UCSC Genome Browser. To access the External Tools pop-up menu, when browsing a genome hover over the "View" menu and then select External Tools.
Author: PublicSessions
Session Name: ExternalTools
Genome Assembly: hub_2100979_GCF_000247795.1
Creation Date: 2021-07-23
Views: 292
1627027200 292
Description:
Author: ashleywilkins
Session Name: hg19 RHO
Genome Assembly: hg19
Creation Date: 2021-09-06
Views: 282
1630915200 282
Description:
Author: Schne2lk
Session Name: hg38 RHO
Genome Assembly: hg38
Creation Date: 2021-09-06
Views: 277
1630915200 277
Description:
Author: artman1967
Session Name: hg19_IBR finale 061521
Genome Assembly: hg19
Creation Date: 2021-06-15
Views: 280
1623744000 280
Description:
Author: Shevelyov
Session Name: LaminDamID in SpG and SpCs
Genome Assembly: dm3
Creation Date: 2021-06-12
Views: 355
1623484800 355
Description:
Author: PolinaKananykina
Session Name: polina_kananykina
Genome Assembly: hg19
Creation Date: 2021-06-09
Views: 302
1623225600 302
Description:
Author: labashmanov
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-06-09
Views: 288
1623225600 288
Description:
Author: PolinaKananykina
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-06-09
Views: 288
1623225600 288
Description:
Author: art591
Session Name: hse21_H3K27ac_MCF-7_human
Genome Assembly: hg19
Creation Date: 2021-06-09
Views: 294
1623225600 294
Description:
Author: xiaolinwei123
Session Name: hg38_gata6
Genome Assembly: hg38
Creation Date: 2021-05-26
Views: 303
1622016000 303
Description:
Author: Xenia
Session Name: DNA methilarion 14chr
Genome Assembly: mm10
Creation Date: 2021-05-24
Views: 314
1621843200 314
Description:
Author: fufat@mail.nih.gov
Session Name: huf_atac_hg38_fufa
Genome Assembly: hg38
Creation Date: 2021-05-16
Views: 151
1621152000 151
Description:
Author: gemtang
Session Name: histone
Genome Assembly: hg38
Creation Date: 2021-06-04
Views: 300
1622793600 300
Description:
Author: Maksimov_Denis
Session Name: RNA_seq
Genome Assembly: mm10
Creation Date: 2021-05-24
Views: 297
1621843200 297
Description: Regions on GRCh37 where discordant exome variant calls are enriched when mapped on GRCh38.
Author: mdawood
Session Name: DISCREPS_GRCh37
Genome Assembly: hg19
Creation Date: 2021-05-17
Views: 378
1621238400 378
Description: Regions on GRCh38 where discordant exome variant calls are enriched when mapped on GRCh37.
Author: mdawood
Session Name: DISCREPs_GRCh38
Genome Assembly: hg38
Creation Date: 2021-05-17
Views: 404
1621238400 404
Description:
Author: jojobajo
Session Name: SarkisyanA
Genome Assembly: mm10
Creation Date: 2021-05-17
Views: 299
1621238400 299
Description:
Author: manu90
Session Name: paciente2_trasloca
Genome Assembly: hg19
Creation Date: 2021-05-12
Views: 303
1620806400 303
Description:
Author: manu90
Session Name: ZMIZ
Genome Assembly: hg19
Creation Date: 2021-05-12
Views: 306
1620806400 306
Description:
Author: Maksimov_Denis
Session Name: chromatine states
Genome Assembly: hg19
Creation Date: 2021-05-11
Views: 308
1620720000 308
Description:
Author: eva re
Session Name: mm10_er
Genome Assembly: mm10
Creation Date: 2021-05-10
Views: 324
1620633600 324
Description:
Author: eva re
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-05-10
Views: 318
1620633600 318
Description:
Author: jdpachec
Session Name: Pacheco-PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-05-01
Views: 315
1619856000 315
Description:
Author: amatsiev
Session Name: Matsiev-PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-04-30
Views: 327
1619769600 327
Description:
Author: kailasdhond
Session Name: BME 110 PS 2
Genome Assembly: hg19
Creation Date: 2021-04-30
Views: 320
1619769600 320
Description:
Author: mbule
Session Name: Bule-PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-04-30
Views: 305
1619769600 305
Description:
Author: mai.baker
Session Name: hg38_SAT1_bed
Genome Assembly: hg38
Creation Date: 2021-04-28
Views: 332
1619596800 332
Description:
Author: beoungle
Session Name: hg19 enhancer and infos
Genome Assembly: hg19
Creation Date: 2021-04-26
Views: 337
1619424000 337
Description:
Author: ramace
Session Name: Mace--PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-04-25
Views: 309
1619337600 309
Description:
Author: Maksimov_Denis
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-05-11
Views: 310
1620720000 310
Description:
Author: abenet
Session Name: HumanMutationFig2
Genome Assembly: hg19
Creation Date: 2021-05-19
Views: 312
1621411200 312
Description:
Author: abenet
Session Name: HumanMutationFig4
Genome Assembly: hg19
Creation Date: 2021-05-19
Views: 313
1621411200 313
Description:
Author: gaotc200
Session Name: mockIP_ce11
Genome Assembly: ce11
Creation Date: 2021-04-19
Views: 333
1618819200 333
Description:
Author: gaotc200
Session Name: mockIP_dm6
Genome Assembly: dm6
Creation Date: 2021-04-19
Views: 314
1618819200 314
Description:
Author: jojshelt
Session Name: ACE 2 04/17/21
Genome Assembly: hg38
Creation Date: 2021-04-17
Views: 320
1618646400 320
Description:
Author: jojshelt
Session Name: SARS CoV 2 04/15/21
Genome Assembly: wuhCor1
Creation Date: 2021-04-15
Views: 316
1618473600 316
Description:
Author: gatupovmikhail
Session Name: mm10_hw1
Genome Assembly: mm10
Creation Date: 2021-04-14
Views: 335
1618387200 335
Description:
Author: Maksimov_Denis
Session Name: bisulfite sequencing
Genome Assembly: mm10
Creation Date: 2021-04-14
Views: 331
1618387200 331
Description:
Author: HRC
Session Name: AngiogenesisProtocol_2021_DeVal
Genome Assembly: hg19
Creation Date: 2021-04-09
Views: 372
1617955200 372
Description:
Author: qscmki
Session Name: WT-RNA-ribo-seq
Genome Assembly: mm10
Creation Date: 2021-04-08
Views: 311
1617868800 311
Description:
Author: gbenegas
Session Name: tabulamuris
Genome Assembly: mm10
Creation Date: 2021-04-06
Views: 402
1617696000 402
Description:
Author: gbenegas
Session Name: primarymotorcortex
Genome Assembly: mm10
Creation Date: 2021-04-06
Views: 405
1617696000 405
Description:
Author: JFormosa
Session Name: Hwk6Pt3
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 38
1645516800 38
Description: This session shows a heat map display using bigBed tracks. A new bigHeat python program helps build a heat-map style display of tracks in various colors. It takes an input BED file and an expression-matrix and generates one bigBed file per column, colored by the values in the matrix. For SARS-2 there are assays where peptides are spotted onto a microarray and antibodies extracted from blood are run over the array and the bigHeat tool was created to aid in visualizing this microarray type data into a collection of stacked tracks in the Browser seen in this session.
Author: brianlee
Session Name: HeatMap
Genome Assembly: wuhCor1
Creation Date: 2021-04-06
Views: 330
1617696000 330
Description:
Author: ldebiasio
Session Name: DeBiaso-PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-04-27
Views: 314
1619510400 314
Description:
Author: marijazzz
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-03-28
Views: 310
1616918400 310
Description:
Author: asalisbury1
Session Name: mm9999
Genome Assembly: mm9
Creation Date: 2021-03-25
Views: 343
1616659200 343
Description:
Author: vrlopez
Session Name: Spring 22 Yeast test VL
Genome Assembly: sacCer3
Creation Date: 2022-01-28
Views: 47
1643356800 47
Description:
Author: Cornelia
Session Name: danRer10_pEGFP-N1_RNA
Genome Assembly: danRer10
Creation Date: 2021-03-04
Views: 372
1614844800 372
Description:
Author: butlertj3
Session Name: sars_cov2_g4_stem-loops
Genome Assembly: wuhCor1
Creation Date: 2020-11-26
Views: 588
1606377600 588
Description:
Author: jhj981111
Session Name: Pde4b
Genome Assembly: mm10
Creation Date: 2021-03-02
Views: 351
1614672000 351
Description:
Author: Mohamed Hisham
Session Name: hg19-HBB
Genome Assembly: hg19
Creation Date: 2021-03-02
Views: 326
1614672000 326
Description:
Author: veronicaburns
Session Name: mm10_210225
Genome Assembly: mm10
Creation Date: 2021-02-25
Views: 351
1614240000 351
Description:
Author: abenet
Session Name: HumanMutationFig3
Genome Assembly: hg19
Creation Date: 2021-05-19
Views: 305
1621411200 305
Description:
Author: elencampoy
Session Name: HsInv0124
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 337
1614153600 337
Description:
Author: elencampoy
Session Name: HsInv1057
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 345
1614153600 345
Description:
Author: elencampoy
Session Name: HsInv1051
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 344
1614153600 344
Description:
Author: elencampoy
Session Name: HsInv0830
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 345
1614153600 345
Description:
Author: elencampoy
Session Name: HsInv0403
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 353
1614153600 353
Description:
Author: elencampoy
Session Name: HsInv0397
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 394
1614153600 394
Description:
Author: elencampoy
Session Name: HsInv0395
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 350
1614153600 350
Description:
Author: elencampoy
Session Name: HsInv0393
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 346
1614153600 346
Description:
Author: elencampoy
Session Name: HsInv0390
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 345
1614153600 345
Description:
Author: elencampoy
Session Name: hsinv0389
Genome Assembly: hg19
Creation Date: 2021-02-24
Views: 343
1614153600 343
Description:
Author: elencampoy
Session Name: HsInv0370
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 349
1614067200 349
Description:
Author: elencampoy
Session Name: HsInv1124
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 353
1614067200 353
Description:
Author: elencampoy
Session Name: HsInv0290
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 346
1614067200 346
Description:
Author: arthurcheng
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2021-02-20
Views: 331
1613808000 331
Description: Genome-wide profiling of histone H1 variants and H3K9me3 in T47D-MTVL cells upon multiple H1 depletion.
Author: NSP
Session Name: GSE156036_GSE166645
Genome Assembly: hg19
Creation Date: 2020-09-08
Views: 556
1599552000 556
Description:
Author: elencampoy
Session Name: HsInv0786
Genome Assembly: hg19
Creation Date: 2021-02-18
Views: 354
1613635200 354
Description:
Author: elencampoy
Session Name: HsInv0344
Genome Assembly: hg19
Creation Date: 2021-02-18
Views: 351
1613635200 351
Description:
Author: elencampoy
Session Name: HsInv0340
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 351
1614067200 351
Description:
Author: elencampoy
Session Name: HsInv0228
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 346
1614067200 346
Description:
Author: elencampoy
Session Name: HsInv0396
Genome Assembly: hg19
Creation Date: 2021-02-17
Views: 356
1613548800 356
Description:
Author: elencampoy
Session Name: hsinv0097
Genome Assembly: hg19
Creation Date: 2021-02-17
Views: 325
1613548800 325
Description: Posterior Column Ataxia with Retinitis Pigmentosa (PCARP) is a genetic disorder caused by mutations in the FLVCR1 gene that codes for Feline Leukemia Virus Subgroup C Cellular Receptor 1. Mutations in this heme transport protein, can lead to heme toxicity which affects vision and the nervous system. Symptoms begin in childhood and can include Tunnel-like visual loss, night blindness, and photophobia. Through adulthood sensory function decreases, and symptoms of atrophy, loss of touch, and scoliosis, are common. There are four variants of the FLVCR1 gene that cause PCARP. Puffenburger et. al identified a novel variant at position 361 of the FLCR1 gene, an Asparagine-to-Aspartic Acid, missense mutation which is highlighted blue. The Puffenburger variant (blue) is the current focus of the track, if you zoom to see the whole FLVCR gene you will see there are three other variants designated by the OMIM Alleles Track. Two additional variants are also located in exon 1, and a third in exon 8. At position 574 there is a variant resulting in a cysteine-to-arginine missense mutation which is highlighted green, and at position 721, an alanine-to-threonine missense mutation which is highlighted yellow. In Exon 8 at position 1477 there is a variant resulting in a glycine-to-arginine missense mutation. The Clinvar Variants track classifies all four as pathogenic missense mutations. Pathogenic and Likely Pathogenic variants are colored red, benign variants are colored green, and variants of uncertain significance are colored gray. The Conservation track shows that the regions where all four variants are highly conserved across several species. There is no amino acid variation between chimps, dogs, cattle, cattle, mice, fowl, and zebrafish. Conservation across all of these species indicates these regions are important to vertebrates, and explains why these missense mutations are damaging.
Author: jrhemm
Session Name: Juniata Bioinformatics JHNH
Genome Assembly: hg19
Creation Date: 2021-02-11
Views: 385
1613030400 385
Description: This session shows bosTau9 for a gene also found in Human_PIK3CG which was described in a PAG 2020 meeting.
Author: brianlee
Session Name: bosTau9_Human_PIK3CG
Genome Assembly: bosTau9
Creation Date: 2021-02-12
Views: 358
1613116800 358
Description:
Author: soniagoozee
Session Name: bushbaby
Genome Assembly: hg38
Creation Date: 2021-02-11
Views: 324
1613030400 324
Description:
Author: elencampoy
Session Name: inversions
Genome Assembly: hg19
Creation Date: 2021-02-11
Views: 351
1613030400 351
Description:
Author: raceschaeffer
Session Name: mm10_task2_int
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 364
1612944000 364
Description:
Author: raceschaeffer
Session Name: mm10_task1
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 373
1612944000 373
Description:
Author: joel_mundkl
Session Name: Alg 13 w/ tracks
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 359
1612944000 359
Description:
Author: joel_mundkl
Session Name: All 3 tracks session
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 355
1612944000 355
Description:
Author: joel_mundkl
Session Name: Gli3 and HH tracks
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 357
1612944000 357
Description:
Author: joel_mundkl
Session Name: Gli3 limb binding mm10 (ptch1)
Genome Assembly: mm10
Creation Date: 2021-02-10
Views: 329
1612944000 329
Description:
Author: qhernand
Session Name: Hernandez-PS2-ACE2-session
Genome Assembly: hg19
Creation Date: 2021-04-30
Views: 321
1619769600 321
Description:
Author: alecmilazzo
Session Name: mm10_1
Genome Assembly: mm10
Creation Date: 2021-02-09
Views: 367
1612857600 367
Description:
Author: as3838
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 337
1612771200 337
Description:
Author: PaoloM1990
Session Name: ACTB_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 357
1612252800 357
Description:
Author: mdrcetin
Session Name: hg38_encode_bcell_cd34myeloidprogenitor_naturalkiller
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 77
1637049600 77
Description:
Author: mdrcetin
Session Name: hg38_encode_ucsf4_hyyees64_h1_h9
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 78
1637049600 78
Description:
Author: mdrcetin
Session Name: hg38_k562_encode_minus_strand_only
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 75
1637049600 75
Description:
Author: molcov
Session Name: Human Duplication
Genome Assembly: hg19
Creation Date: 2021-01-31
Views: 407
1612080000 407
Description: coronavirus spike protein
Author: Example
Session Name: wuhCor1_spike
Genome Assembly: wuhCor1
Creation Date: 2021-01-25
Views: 369
1611561600 369
Description:
Author: Dongyao_Liu
Session Name: mm9_BAML1_and_CLOCK
Genome Assembly: mm9
Creation Date: 2021-04-13
Views: 343
1618300800 343
Description: The hub shows association of copy number changes of VNTRs (Variable Number Tander Repeat) with local gene expression and CpG methylation in two discovery cohorts ane one replication cohort for which PCR-free Illumina WGS data were available.<br> Read more here: https://gargp01.u.hpc.mssm.edu/ucsc_exp_meth_vntr.html
Author: brianlee
Session Name: VNTR
Genome Assembly: hg19
Creation Date: 2021-01-22
Views: 372
1611302400 372
Description:
Author: elencampoy
Session Name: Hsinv0209
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 329
1614067200 329
Description:
Author: elencampoy
Session Name: HsInv0030
Genome Assembly: hg19
Creation Date: 2021-02-23
Views: 343
1614067200 343
Description: browser position chr2:177,454,794-177,476,693
Author: leene123
Session Name: hg19_SEQ
Genome Assembly: hg19
Creation Date: 2021-01-17
Views: 358
1610870400 358
Description:
Author: BOPOHDR
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2021-01-12
Views: 547
1610438400 547
Description:
Author: ashleywilkins
Session Name: hg19 RHO 2
Genome Assembly: hg19
Creation Date: 2021-09-06
Views: 270
1630915200 270
Description:
Author: as3838
Session Name: PATRICKDATA
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 360
1612771200 360
Description:
Author: AnnaClaireR1
Session Name: mm10_3tracks
Genome Assembly: mm10
Creation Date: 2021-02-01
Views: 363
1612166400 363
Description:
Author: AnnaClaireR1
Session Name: mm10_testupload
Genome Assembly: mm10
Creation Date: 2021-02-01
Views: 349
1612166400 349
Description:
Author: PaoloM1990
Session Name: GAPDH_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 351
1612252800 351
Description:
Author: PaoloM1990
Session Name: ATP6V0E1_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 353
1612252800 353
Description:
Author: PaoloM1990
Session Name: GBA_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 355
1612252800 355
Description:
Author: PaoloM1990
Session Name: CTSD_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 349
1612252800 349
Description:
Author: PaoloM1990
Session Name: CTSB_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 354
1612252800 354
Description:
Author: PaoloM1990
Session Name: CTSL_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 347
1612252800 347
Description:
Author: PaoloM1990
Session Name: MCOLN1_qPCR primers
Genome Assembly: hg19
Creation Date: 2021-02-02
Views: 343
1612252800 343
Description:
Author: AnnaClaireR1
Session Name: mm10_smoc
Genome Assembly: mm10
Creation Date: 2021-02-02
Views: 370
1612252800 370
Description: This session helps demonstrate the Simple Tandem Repeats by TRF track. It includes a Short Match track that is simply highlighting the sequence <b>ctctcgct</b> within the window and this reflects how a programmatic approach can annotate the genome, where the Tandem Repeats Finder (TRF) program helps discover and annotate possibly imperfect repeats as well as exact matches. Users who are interested in STRs may want to look at a resource called STRBase https://strbase.nist.gov/index.htm which was founded in 2001 and includes a Variant Allele Reports page for those searching for allele or frequency count information.
Author: brianlee
Session Name: hg38_STR
Genome Assembly: hg38
Creation Date: 2021-01-07
Views: 566
1610006400 566
Description: This session shows an assembly hub on mink that can be loaded with this quick link: https://genome.ucsc.edu/h/GCA_900108605.1<br> The link can also be searched with the position= term: https://genome.ucsc.edu/h/GCA_900108605.1?position=ACE2 <br> It can also have custom data displayed on it, in this case an interact file that can be loaded under My Data and Custom Tracks.
Author: brianlee
Session Name: Mink_hub_interact
Genome Assembly: hub_2637617_GCA_900108605.1
Creation Date: 2021-01-07
Views: 572
1610006400 572
Description:
Author: sarahjc
Session Name: FM GR ChIP Miseq
Genome Assembly: hg38
Creation Date: 2021-01-02
Views: 521
1609574400 521
Description:
Author: BOPOHDR
Session Name: GRCh37_CNV_SNV_2
Genome Assembly: hg19
Creation Date: 2020-12-21
Views: 525
1608537600 525
Description:
Author: Libby3121
Session Name: mm39 FoxA2 sites
Genome Assembly: mm39
Creation Date: 2020-12-20
Views: 519
1608451200 519
Description:
Author: BOPOHDR
Session Name: GRCh37_CNV_SNV
Genome Assembly: hg19
Creation Date: 2020-12-19
Views: 591
1608364800 591
Description:
Author: solbru
Session Name: hg19_TANGO6
Genome Assembly: hg19
Creation Date: 2020-12-18
Views: 536
1608278400 536
Description:
Author: molcov
Session Name: Drosophila Duplication
Genome Assembly: dm6
Creation Date: 2021-01-30
Views: 445
1611993600 445
Description:
Author: joliemb
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-02-04
Views: 381
1612425600 381
Description:
Author: mongerc
Session Name: mm10BMI1
Genome Assembly: mm10
Creation Date: 2020-12-16
Views: 539
1608105600 539
Description:
Author: rpe13002
Session Name: hg38_CT83_iso3
Genome Assembly: hg38
Creation Date: 2020-12-13
Views: 522
1607846400 522
Description:
Author: rpe13002
Session Name: hg38_TMPRSS4_iso4
Genome Assembly: hg38
Creation Date: 2020-12-12
Views: 531
1607760000 531
Description:
Author: rpe13002
Session Name: hg38_CT83
Genome Assembly: hg38
Creation Date: 2020-12-12
Views: 555
1607760000 555
Description:
Author: rpe13002
Session Name: hg38_ADAM9_iso27
Genome Assembly: hg38
Creation Date: 2020-12-12
Views: 542
1607760000 542
Description:
Author: rpe13002
Session Name: hg38_ITGA6_iso20
Genome Assembly: hg38
Creation Date: 2020-12-12
Views: 542
1607760000 542
Description:
Author: mongerc
Session Name: Brien2020AllTracks
Genome Assembly: hg38
Creation Date: 2020-12-07
Views: 541
1607328000 541
Description:
Author: mongerc
Session Name: Brien2020ChIP-RX
Genome Assembly: hg38
Creation Date: 2020-12-07
Views: 530
1607328000 530
Description:
Author: JZhaoARUP
Session Name: hg19_ARUP_CMA_multi_gene
Genome Assembly: hg19
Creation Date: 2020-11-14
Views: 849
1605340800 849
Description:
Author: JZhaoARUP
Session Name: hg19_ARUP_CMA_single_gene
Genome Assembly: hg19
Creation Date: 2020-11-14
Views: 765
1605340800 765
Description:
Author: sarahjc
Session Name: Nextseq Dedup ESF BAC SS 113020
Genome Assembly: hg38
Creation Date: 2020-11-30
Views: 540
1606723200 540
Description:
Author: ustiugova_al
Session Name: au
Genome Assembly: hg38
Creation Date: 2020-11-27
Views: 536
1606464000 536
Description:
Author: ck-j
Session Name: RNAseq-WT/KO-chr12:113,418,558-113,422,730
Genome Assembly: mm10
Creation Date: 2020-11-21
Views: 68
1605945600 68
Description:
Author: ck-j
Session Name: PCPB1-chr12:113,418,558-113,422,730
Genome Assembly: mm10
Creation Date: 2020-11-17
Views: 113
1605600000 113
Description: KJ8Vehicle = 0d +TGFB KJ15eEMT = 2d +TGFB KJ12pEMT = 4d +TGFB KJ14Trans = 4d +TGFB followed by 4d TGFB withdrawal KJ11fMET2 = 4d +TGFB followed by 10d TGFB withdrawal KJ9fEMT = 10d +TGFB KJ13pMET = 10d +TGFB followed by 4d TGFB withdrawal KJ10fMET1 = 10d +TGFB followed by 10d TGFB withdrawal
Author: kelsey_johnson1
Session Name: Reversible EMT ATAC-seq peaks
Genome Assembly: hg19
Creation Date: 2020-11-20
Views: 369
1605859200 369
Description: NRA-Anterograde Regulation of Nuclear-encoded Mitochondrial Genes and FGF21 Signaling by Hepatic Histone Demethylase LSD1
Author: qiushi
Session Name: RNAseq
Genome Assembly: mm10
Creation Date: 2020-11-12
Views: 578
1605168000 578
Description: NRA-Anterograde Regulation of Nuclear-encoded Mitochondrial Genes and FGF21 Signaling by Hepatic Histone Demethylase LSD1
Author: qiushi
Session Name: ChIPseq
Genome Assembly: mm10
Creation Date: 2020-11-12
Views: 587
1605168000 587
Description:
Author: kkaczor
Session Name: cirm_ucla_2
Genome Assembly: hg38
Creation Date: 2020-11-11
Views: 537
1605081600 537
Description:
Author: jranish
Session Name: Castrillo LXR ChIP
Genome Assembly: mm10
Creation Date: 2020-10-27
Views: 286
1603785600 286
Description:
Author: zgtman
Session Name: Genescan_3_hg38_SRY
Genome Assembly: hg38
Creation Date: 2021-01-12
Views: 514
1610438400 514
Description:
Author: manu90
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2020-11-15
Views: 303
1605427200 303
Description:
Author: evechen97
Session Name: EC-39545454-MEDG580-UBC-2020
Genome Assembly: hg38
Creation Date: 2021-10-10
Views: 272
1633852800 272
Description:
Author: aurbanow
Session Name: tammer
Genome Assembly: mm10
Creation Date: 2020-11-25
Views: 559
1606291200 559
Description:
Author: rafal.czapiewski@ed.ac.uk
Session Name: BAC_FOSMID
Genome Assembly: mm9
Creation Date: 2020-10-16
Views: 555
1602835200 555
Description:
Author: psharma
Session Name: 6. PS-75227116-MEDG580-UBC-2020
Genome Assembly: hg38
Creation Date: 2020-10-06
Views: 571
1601971200 571
Description:
Author: williamhconrad
Session Name: TSS-evaluation-lite-2
Genome Assembly: hg19
Creation Date: 2021-10-07
Views: 113
1633593600 113
Description:
Author: williamhconrad
Session Name: TSS-evaluation-lite
Genome Assembly: hg19
Creation Date: 2021-10-07
Views: 243
1633593600 243
Description:
Author: fushenchu
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2020-09-28
Views: 606
1601280000 606
Description:
Author: sshen82
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2021-09-06
Views: 291
1630915200 291
Description:
Author: federikr
Session Name: CRX
Genome Assembly: hg38
Creation Date: 2020-09-28
Views: 606
1601280000 606
Description: ClinGen tracks show dosage sensitivity (deletion or gains will cause disease or not) of described copy number region (ISCA) and single genes in the region and curation of association of diseases to the genes in these region.
Author: abenet
Session Name: clinical-ClinGenCuration
Genome Assembly: hg19
Creation Date: 2020-09-25
Views: 606
1601020800 606
Description:
Author: zahra jafari
Session Name: homwork
Genome Assembly: hg19
Creation Date: 2021-12-03
Views: 70
1638518400 70
Description:
Author: williamhconrad
Session Name: TSS-evaluation
Genome Assembly: hg19
Creation Date: 2020-09-21
Views: 621
1600675200 621
Description:
Author: kianayaghoobian
Session Name: TAS2R38 UniProt
Genome Assembly: hg19
Creation Date: 2020-09-20
Views: 600
1600588800 600
Description:
Author: kianayaghoobian
Session Name: TAS2R38 group1
Genome Assembly: hg19
Creation Date: 2020-09-20
Views: 588
1600588800 588
Description:
Author: jzhicks07
Session Name: TAS2R38 JMH_1
Genome Assembly: hg19
Creation Date: 2020-09-14
Views: 624
1600070400 624
Description:
Author: manu90
Session Name: TAD!!
Genome Assembly: hg19
Creation Date: 2021-06-03
Views: 314
1622707200 314
Description:
Author: jzhicks07
Session Name: TAS2R38 JMH
Genome Assembly: hg19
Creation Date: 2020-09-12
Views: 620
1599897600 620
Description:
Author: zgtman
Session Name: OTOA
Genome Assembly: hg38
Creation Date: 2021-10-11
Views: 249
1633939200 249
Description:
Author: rstarks23
Session Name: e9.5Placenta_HistoneModification
Genome Assembly: mm10
Creation Date: 2020-09-09
Views: 577
1599638400 577
Description:
Author: AMOza
Session Name: LMM_Conservation
Genome Assembly: hg19
Creation Date: 2020-09-09
Views: 656
1599638400 656
Description:
Author: maddieevans9
Session Name: TAS2R38 group(ME,BZ,CB)
Genome Assembly: hg19
Creation Date: 2020-09-09
Views: 1339
1599638400 1339
Description:
Author: gage2ea
Session Name: Fall20 Worm test group 3
Genome Assembly: ce11
Creation Date: 2020-09-08
Views: 640
1599552000 640
Description:
Author: sconyejekwe
Session Name: Fall20 Mouse test group#5
Genome Assembly: mm9
Creation Date: 2020-09-08
Views: 579
1599552000 579
Description:
Author: calvinc98
Session Name: Fall20 Mouse test group 6
Genome Assembly: mm9
Creation Date: 2020-09-08
Views: 620
1599552000 620
Description:
Author: occamslaser
Session Name: Fall20 Worm test group# 4
Genome Assembly: ce11
Creation Date: 2020-09-08
Views: 577
1599552000 577
Description:
Author: hrbaylous
Session Name: Fall20 yeast test group 1
Genome Assembly: sacCer3
Creation Date: 2020-09-08
Views: 613
1599552000 613
Description:
Author: Haley Yandrasitz
Session Name: Fall20 Mouse Test group#5
Genome Assembly: mm9
Creation Date: 2020-09-08
Views: 737
1599552000 737
Description:
Author: jzhicks07
Session Name: CGEMS yeast JMH test
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 597
1599465600 597
Description:
Author: biologyassignment
Session Name: Fall19 Yeast test (ACG)
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 608
1599465600 608
Description:
Author: ArcherS
Session Name: Fall19 Yeast test A.S.
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 602
1599465600 602
Description:
Author: federikr
Session Name: Fall20 TAS2R38 group#3
Genome Assembly: hg19
Creation Date: 2020-09-07
Views: 599
1599465600 599
Description:
Author: perryts
Session Name: Fall20 Yeast Test (TSP)
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 601
1599465600 601
Description:
Author: maddieevans9
Session Name: Fall20 Yeast test (ME)
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 613
1599465600 613
Description:
Author: lauren_soleo
Session Name: TAS2R38 group 1
Genome Assembly: hg19
Creation Date: 2020-09-07
Views: 616
1599465600 616
Description:
Author: brockse
Session Name: TAS2R38 group 1
Genome Assembly: hg19
Creation Date: 2020-09-07
Views: 605
1599465600 605
Description:
Author: Chadtb220
Session Name: Fall19 Yeast test CTB
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 610
1599465600 610
Description:
Author: AMOza
Session Name: LMM_Conservation_hg38
Genome Assembly: hg38
Creation Date: 2020-09-09
Views: 1398
1599638400 1398
Description:
Author: kianayaghoobian
Session Name: Fall19 Yeast test KY
Genome Assembly: sacCer3
Creation Date: 2020-09-07
Views: 618
1599465600 618
Description:
Author: KeelynCrossin
Session Name: Fall20 yeast test KGC
Genome Assembly: sacCer3
Creation Date: 2020-09-06
Views: 585
1599379200 585
Description:
Author: JFormosa
Session Name: Hwk6Pt2
Genome Assembly: hg19
Creation Date: 2022-02-22
Views: 32
1645516800 32
Description:
Author: embdukes
Session Name: Fall20 Yeast test (EDB)
Genome Assembly: sacCer3
Creation Date: 2020-09-06
Views: 641
1599379200 641
Description:
Author: napace
Session Name: Fall19 Yeast test NAP
Genome Assembly: sacCer3
Creation Date: 2020-09-06
Views: 613
1599379200 613
Description:
Author: federikr
Session Name: Fall20 Yeast Test KF
Genome Assembly: sacCer3
Creation Date: 2020-09-06
Views: 622
1599379200 622
Description:
Author: JRozick147
Session Name: wuhCor1-1
Genome Assembly: wuhCor1
Creation Date: 2020-09-05
Views: 678
1599292800 678
Description:
Author: lauren_soleo
Session Name: Fall20 Yeast test LS
Genome Assembly: sacCer3
Creation Date: 2020-09-04
Views: 608
1599206400 608
Description: This session is of the new ALFA (Allele Frequency Aggregator) variants and allele frequency hub. Results from the Allele Frequency Aggregator (ALFA) project will help users interpret the biological impact of common and rare sequence variants. ALFA's initial release includes analysis of genotype data from ~100K unrestricted dbGaP subjects and provides high-quality allele frequency data now displayed on relevant dbSNP records. Eventually ALFA will analyze more than 1M subjects. The current version is for hg38/GRCh38 with work to include hg19/GRCh37 data. Read more about the ALFA project page here: https://www.ncbi.nlm.nih.gov/snp/docs/gsr/alfa
Author: brianlee
Session Name: ALFA_Trio
Genome Assembly: hg38
Creation Date: 2020-09-03
Views: 975
1599120000 975
Description:
Author: brockse
Session Name: Fall20 Yeast Test SB
Genome Assembly: sacCer3
Creation Date: 2020-08-31
Views: 637
1598860800 637
Description:
Author: Yuanyuan Zhang
Session Name: Mechanism of 5mC controlled Arabidopsis clock pace
Genome Assembly: hub_329263_araTha1
Creation Date: 2021-01-11
Views: 536
1610352000 536
Description:
Author: mongerc
Session Name: mm10Suz12
Genome Assembly: mm10
Creation Date: 2020-08-28
Views: 658
1598601600 658
Description:
Author: alfordml
Session Name: Spring22 Yeast test MA
Genome Assembly: sacCer3
Creation Date: 2022-01-25
Views: 49
1643097600 49
Description:
Author: gera912
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2020-08-11
Views: 633
1597132800 633
Description:
Author: feng xue
Session Name: kdm4c
Genome Assembly: hg17
Creation Date: 2020-08-10
Views: 714
1597046400 714
Description:
Author: shuynhs
Session Name: SH-61951083-MEDG580-UBC-2020
Genome Assembly: hg38
Creation Date: 2020-10-05
Views: 583
1601884800 583
Description: Session of ASHG 2020 Figure 2. Displays Hi-C track format with custom display options (score normalization, display color, arc display).
Author: Lou
Session Name: ASHG2
Genome Assembly: hg19
Creation Date: 2020-10-05
Views: 662
1601884800 662
Description: Session of ASHG 2020 Figure 1. Displays Hi-C track format with default settings. Additional tracks include UCSC Genes, ChIP-seq signal track from ENCODE, and GeneHancer clustered interactions.
Author: Lou
Session Name: ASHG1
Genome Assembly: hg19
Creation Date: 2020-10-05
Views: 622
1601884800 622
Description:
Author: boothc
Session Name: Fish n Chips detailed
Genome Assembly: danRer10
Creation Date: 2020-08-04
Views: 687
1596528000 687
Description:
Author: elencampoy
Session Name: HsInv0573
Genome Assembly: hg19
Creation Date: 2021-02-18
Views: 379
1613635200 379
Description:
Author: jzhicks07
Session Name: CRX 9.28 JMH
Genome Assembly: hg38
Creation Date: 2020-09-28
Views: 595
1601280000 595
Description:
Author: simonwang612
Session Name: Ying_ATAC_GSDMD
Genome Assembly: mm10
Creation Date: 2020-07-23
Views: 708
1595491200 708
Description:
Author: simonwang612
Session Name: Ying_ATACseq_peaks
Genome Assembly: mm10
Creation Date: 2020-07-23
Views: 666
1595491200 666
Description:
Author: simonwang612
Session Name: atac_Ying
Genome Assembly: mm10
Creation Date: 2020-07-23
Views: 683
1595491200 683
Description:
Author: simonwang612
Session Name: mm10_atac_Ying
Genome Assembly: mm10
Creation Date: 2020-07-23
Views: 654
1595491200 654
Description:
Author: Lachlan Coin
Session Name: dRNA
Genome Assembly: hg38
Creation Date: 2020-07-22
Views: 656
1595404800 656
Description:
Author: cfausto
Session Name: mm10-cttnb-lef1-alltcf
Genome Assembly: mm10
Creation Date: 2022-03-14
Views: 31
1647244800 31
Description:
Author: Marie-José
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2020-07-28
Views: 647
1595923200 647
Description:
Author: shaghayegh dastjerdi
Session Name: hg19/smad3 new promoters
Genome Assembly: hg19
Creation Date: 2020-07-27
Views: 666
1595836800 666
Description:
Author: Schne2lk
Session Name: hg38 RHO multiomics
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 84
1637049600 84
Description:
Author: ashleywilkins
Session Name: hg38 retinal multiomics
Genome Assembly: hg38
Creation Date: 2021-11-16
Views: 94
1637049600 94
Description:
Author: chalie102
Session Name: HDA_ChIP_H3K18ac
Genome Assembly: sacCer3
Creation Date: 2021-02-15
Views: 362
1613376000 362
Description:
Author: vperreau@unimelb.edu.au
Session Name: hg38_NTRK2_blat_probes
Genome Assembly: hg38
Creation Date: 2020-10-12
Views: 656
1602489600 656
Description:
Author: LalehEbr
Session Name: hg19 UCSC workshop assignment
Genome Assembly: hg19
Creation Date: 2020-07-19
Views: 734
1595145600 734
Description:
Author: fatemeh sadat
Session Name: F
Genome Assembly: hg19
Creation Date: 2020-07-19
Views: 639
1595145600 639
Description:
Author: shaghayegh dastjerdi
Session Name: hg19/dastjerdi
Genome Assembly: hg19
Creation Date: 2020-07-17
Views: 665
1594972800 665
Description:
Author: fatemeh sadat
Session Name: FASc
Genome Assembly: hg19
Creation Date: 2020-07-19
Views: 1021
1595145600 1021
Description:
Author: shaghayegh dastjerdi
Session Name: hg19/Smad3 promoter
Genome Assembly: hg19
Creation Date: 2020-07-17
Views: 679
1594972800 679
Description: MetamORF: A repository of unique small Open Reading Frames identified by both experimental and computational approaches for gene-level and meta analyses
Author: schoteau
Session Name: MetamORF (hg38)
Genome Assembly: hg38
Creation Date: 2020-07-14
Views: 697
1594713600 697
Description:
Author: mongerc
Session Name: Brien2020ChipRX
Genome Assembly: hg38
Creation Date: 2020-07-09
Views: 699
1594281600 699
Description:
Author: mongerc
Session Name: Brien2020RNASeq
Genome Assembly: hg38
Creation Date: 2020-07-09
Views: 723
1594281600 723
Description:
Author: mongerc
Session Name: Brien2020ATAC
Genome Assembly: hg38
Creation Date: 2020-07-09
Views: 690
1594281600 690
Description:
Author: Marie-José
Session Name: hg19_TAD
Genome Assembly: hg19
Creation Date: 2020-07-09
Views: 708
1594281600 708
Description:
Author: Stephanie
Session Name: hg19-OXTR
Genome Assembly: hg19
Creation Date: 2020-07-08
Views: 691
1594195200 691
Description:
Author: Stephanie
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2020-07-08
Views: 658
1594195200 658
Description:
Author: Chen Chunpeng
Session Name: GBM_STAT
Genome Assembly: hg38
Creation Date: 2020-07-14
Views: 647
1594713600 647
Description:
Author: Stephanie
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2020-07-08
Views: 666
1594195200 666
Description:
Author: ranjan99
Session Name: RCas9_HSA_IM
Genome Assembly: mm10
Creation Date: 2020-06-28
Views: 871
1593331200 871
Description:
Author: ustiugova_al
Session Name: cd27
Genome Assembly: hg38
Creation Date: 2020-06-26
Views: 709
1593158400 709
Description:
Author: ccpowell
Session Name: solLy4
Genome Assembly: hub_2266061_solLy4
Creation Date: 2020-06-15
Views: 738
1592208000 738
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3K9me3
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 679
1592467200 679
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3K27me3
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 666
1592467200 666
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3K36me3
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 667
1592467200 667
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3K9ac
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 648
1592467200 648
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3K27ac
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 658
1592467200 658
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, K4me2
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 657
1592467200 657
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H3Kme1
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 652
1592467200 652
Description:
Author: Dbakalar
Session Name: Rapgef2 mRNA, promotors, H4me3
Genome Assembly: mm10
Creation Date: 2020-06-18
Views: 704
1592467200 704
Description:
Author: jeramiahsmith
Session Name: RNAseq_regen_compil
Genome Assembly: hub_1106737_Amex_PQ.v4
Creation Date: 2020-06-17
Views: 718
1592380800 718
Description:
Author: williamhconrad
Session Name: hg19 HCT116 DMR Methylation
Genome Assembly: hg19
Creation Date: 2020-06-09
Views: 742
1591689600 742
Description:
Author: nickeener
Session Name: SARS-CoV-2 Selection
Genome Assembly: wuhCor1
Creation Date: 2020-06-03
Views: 695
1591171200 695
Description:
Author: br1215@nyu.edu
Session Name: ce10_OP_CNV
Genome Assembly: ce10
Creation Date: 2020-06-01
Views: 732
1590998400 732
Screenshot not available
Click Here to view
Description:
Author: dianegirard
Session Name: H3K27ac_ChIPseq_EPI_hg38
Genome Assembly: hg38
Creation Date: 2020-06-01
Views: 670
1590998400 670
Screenshot not available
Click Here to view
Description:
Author: dianegirard
Session Name: H3K27ac_ChIPseq_EPICARD_hg38
Genome Assembly: hg38
Creation Date: 2020-05-30
Views: 690
1590825600 690
Screenshot not available
Click Here to view
Description:
Author: dianegirard
Session Name: H3K27ac_ChIPseq_CARD
Genome Assembly: hg38
Creation Date: 2020-05-30
Views: 702
1590825600 702
Description:
Author: yezheng
Session Name: CART_CUTANDRUN
Genome Assembly: hg38
Creation Date: 2020-06-10
Views: 728
1591776000 728
Description:
Author: ccpowell
Session Name: solLyc1
Genome Assembly: hub_2224691_solLyc1
Creation Date: 2020-05-25
Views: 719
1590393600 719
Description:
Author: br1215@nyu.edu
Session Name: ce10_CNV_10kb_FINAL
Genome Assembly: ce10
Creation Date: 2020-05-17
Views: 708
1589702400 708
Description:
Author: br1215@nyu.edu
Session Name: ce10_CNV_FINAL
Genome Assembly: ce10
Creation Date: 2020-05-17
Views: 721
1589702400 721
Description:
Author: msadams
Session Name: Mouse_Isoforms
Genome Assembly: mm39
Creation Date: 2021-06-02
Views: 130
1622620800 130
Description:
Author: m1kss
Session Name: mouse chr16 methylation embryonic
Genome Assembly: mm10
Creation Date: 2020-05-13
Views: 706
1589356800 706
Description:
Author: yael porat
Session Name: myc
Genome Assembly: hg38
Creation Date: 2020-05-10
Views: 705
1589097600 705
Description: RNA plus-sense secondary structure prediction by Rangan et al are displayed. Both MEA secondary structured and MSA conserved sequences are formatted as separate tracks. All instances of "CUAAAC" motifs are annotated (plus-sense purple, negative-sense teal, complement GUUUAG) Yellow highlights represent hypothesized negative or complement interactions. Orange highlights represent non-canonical template switching overlapping with regions with high confidence secondary structure predictions. Blue highlights represent canonical TRS-L TRS-B template switching.
Author: jssim
Session Name: wuhCor
Genome Assembly: wuhCor1
Creation Date: 2020-04-23
Views: 859
1587628800 859
Description:
Author: apacis
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2020-05-06
Views: 722
1588752000 722
Description:
Author: Annaneed
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2020-07-06
Views: 682
1594022400 682
Description:
Author: tsvid
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2021-09-27
Views: 267
1632729600 267
Description:
Author: aoludipe
Session Name: hg19_kishimoto 1998
Genome Assembly: hg19
Creation Date: 2021-09-27
Views: 258
1632729600 258
Description: All patient isolates in PRJNA613958, with exception of MinION sequenced, were individually aligned against the NC_045512.2 reference with SNPs called for each isolate using 'ngskit4b kalign'. A matrix of all individual isolate SNP site loci (rows) and isolate base calls at that loci (cols) created with 'ngskit4b snpmarkers' and this matrix then processed with 'ngskit4b snps2pgsnps' to output the pgSNPs tracks. Tracks show, for each SNP loci, the number of isolates containing the displayed allele base. Difference in tracks results from strictness of parameterisations (Allelic PValue, read coverage) used when calling SNPs.
Author: biodiscovery
Session Name: wuhCor1 PRJNA613958 allele union
Genome Assembly: wuhCor1
Creation Date: 2020-04-26
Views: 777
1587888000 777
Description:
Author: tmitchell1
Session Name: SNCG with EXON2 CT and CHB and SK-N-MC
Genome Assembly: hg38
Creation Date: 2020-04-15
Views: 714
1586937600 714
Description:
Author: tmitchell1
Session Name: SNCB CT with CHB and SK-N-MC
Genome Assembly: hg38
Creation Date: 2020-04-15
Views: 730
1586937600 730
Description:
Author: tmitchell1
Session Name: SNCG CT with CHB and SK-N-MC
Genome Assembly: hg38
Creation Date: 2020-04-15
Views: 772
1586937600 772
Description:
Author: ssdhar
Session Name: hg19 new H3k27 ac Her3
Genome Assembly: hg19
Creation Date: 2021-08-16
Views: 268
1629100800 268
Description:
Author: kianayaghoobian
Session Name: CRISPR
Genome Assembly: hg38
Creation Date: 2020-09-28
Views: 588
1601280000 588
Description:
Author: tmitchell
Session Name: WT and mutant on CFTR
Genome Assembly: mm9
Creation Date: 2020-04-03
Views: 727
1585900800 727
Description:
Author: tmitchell
Session Name: WT and Mutant on Guca1b
Genome Assembly: mm9
Creation Date: 2020-04-03
Views: 721
1585900800 721
Description:
Author: tmitchell
Session Name: WT and mutant on Guca1a
Genome Assembly: mm9
Creation Date: 2020-04-03
Views: 725
1585900800 725
Description:
Author: tmitchell
Session Name: WT and Mutant CRX
Genome Assembly: mm9
Creation Date: 2020-04-03
Views: 713
1585900800 713
Description:
Author: tmitchell
Session Name: MAPT mutation custom track
Genome Assembly: hg38
Creation Date: 2020-04-03
Views: 737
1585900800 737
Description:
Author: tmitchell
Session Name: Exonic seq Custom Track
Genome Assembly: hg19
Creation Date: 2020-04-03
Views: 727
1585900800 727
Description:
Author: liaohy
Session Name: RNAseq_Xia.L_Control_Cex
Genome Assembly: hg19
Creation Date: 2020-04-01
Views: 738
1585728000 738
Description:
Author: liaohy
Session Name: RNAseq_Lin.XT_AM20191204
Genome Assembly: hg38
Creation Date: 2020-04-01
Views: 758
1585728000 758
Description:
Author: Genomedx
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2020-04-09
Views: 756
1586419200 756
Description:
Author: tmitchell
Session Name: WT and Mutant Arr3
Genome Assembly: mm9
Creation Date: 2020-04-03
Views: 715
1585900800 715
Description:
Author: andre2tj
Session Name: 3/31_Lab_Assignment_1
Genome Assembly: hg19
Creation Date: 2020-03-31
Views: 930
1585641600 930
Description:
Author: liaohy
Session Name: RNAseq_Lian.JB_AM20200311-01
Genome Assembly: hg38
Creation Date: 2020-03-30
Views: 750
1585555200 750
Description:
Author: sajjeev
Session Name: ICR_CMYC_optimization_03262020
Genome Assembly: hg19
Creation Date: 2020-03-26
Views: 822
1585209600 822
Description:
Author: ChPreuss
Session Name: MODEL_AD_NONCODING_VARIANTS_PRIORITIZATION
Genome Assembly: hg19
Creation Date: 2020-03-24
Views: 800
1585036800 800
Description: ReMap 2020: An atlas of regulatory regions from an integrative analysis of Human and Arabidopsis thaliana DNA-binding sequencing experiments. Go to <a href="http://remap.univ-amu.fr">ReMap</a> for more info.
Author: Benoit Ballester
Session Name: US_ReMap2020_hg38
Genome Assembly: hg38
Creation Date: 2019-08-28
Views: 3563
1566979200 3563
Description:
Author: fengtao-cau
Session Name: susScr11
Genome Assembly: susScr11
Creation Date: 2020-03-10
Views: 786
1583827200 786
Description:
Author: apodgorny
Session Name: RNA_Seq
Genome Assembly: hg38
Creation Date: 2021-08-04
Views: 73
1628064000 73
Description:
Author: jeramiahsmith
Session Name: JS_structure_02262020
Genome Assembly: hub_1106737_Amex_PQ.v4
Creation Date: 2020-02-26
Views: 635
1582704000 635
Description:
Author: celiagonzalez98
Session Name: Team Work 2
Genome Assembly: hg19
Creation Date: 2020-02-24
Views: 794
1582531200 794
Description:
Author: celiagonzalez98
Session Name: Team Work
Genome Assembly: hg38
Creation Date: 2020-02-24
Views: 762
1582531200 762
Description:
Author: Fu Haifeng
Session Name: Primed VS Naive
Genome Assembly: mm10
Creation Date: 2020-02-21
Views: 786
1582272000 786
Description:
Author: chend8
Session Name: ATAC_150_intergenic_5
Genome Assembly: dm6
Creation Date: 2020-02-19
Views: 883
1582099200 883
Description:
Author: vinayswamy
Session Name: DNTX
Genome Assembly: hg38
Creation Date: 2020-02-17
Views: 761
1581926400 761
Description:
Author: Tamira
Session Name: Mouse ECR
Genome Assembly: hg19
Creation Date: 2020-02-17
Views: 788
1581926400 788
Description:
Author: gaguil17
Session Name: Intersection.
Genome Assembly: mm10
Creation Date: 2020-02-16
Views: 743
1581840000 743
Description:
Author: celiagonzalez98
Session Name: class 4 part 2
Genome Assembly: hg19
Creation Date: 2020-02-13
Views: 785
1581580800 785
Description:
Author: celiagonzalez98
Session Name: class 4 part 1
Genome Assembly: hg19
Creation Date: 2020-02-13
Views: 785
1581580800 785
Description:
Author: UxueHuarte
Session Name: my sesion
Genome Assembly: hg19
Creation Date: 2020-02-13
Views: 744
1581580800 744
Description:
Author: dmr2928
Session Name: Daniel Robertson
Genome Assembly: mm10
Creation Date: 2020-02-12
Views: 761
1581494400 761
Description:
Author: AdrianFer
Session Name: Intersected_Updated
Genome Assembly: mm10
Creation Date: 2020-02-12
Views: 798
1581494400 798
Description:
Author: gaguil17
Session Name: Fgf17
Genome Assembly: mm10
Creation Date: 2020-02-12
Views: 744
1581494400 744
Description:
Author: ManteoAndrade
Session Name: bejeranofoxp2
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 763
1581494400 763
Description:
Author: celiagonzalez98
Session Name: class 3 part 2
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 776
1581494400 776
Description:
Author: celiagonzalez98
Session Name: class 2 enviar
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 778
1581408000 778
Description:
Author: mecay.1
Session Name: Session 2 final
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 804
1581408000 804
Description:
Author: JonMatas
Session Name: GenoPractice 2 Public
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 775
1581408000 775
Description: Juniata Bioinformatics Infantile Parkinsonism – dystonia is the second most popular neurodegenerative disorder. It is followed by Alzheimer. This disease is present in infancy and prevent those affected to live past their teenage year. This disease is fatal and has a second name known as Transporter deficiency Syndrome (DTDS). Those individuals that are affected may have many problem; limb dyskinesia, dystonia, and chorea, (OMIM,1). Currently we do not have an effective treatment to treat Infantile Parkinsonism-dystonia. This genetic mutation shows an increase between HVA and 5-HIAA in the cerebrospinal fluid. This leads to an increase in dopamine to serotonin metabolites, (OMIN,1).
Author: mmendez
Session Name: Juniata Bioinformatics; MM & NP
Genome Assembly: hg19
Creation Date: 2020-02-10
Views: 724
1581321600 724
Description: Set of publicly available tracks to define enhance regions used in the human left ventricle. Accompanies Gacita et al, 2020.
Author: agacita
Session Name: Gacita_et_al_LV_Enhancer_Tracks
Genome Assembly: hg19
Creation Date: 2020-02-10
Views: 872
1581321600 872
Description:
Author: Andy20UNAV
Session Name: SESION2
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 788
1581408000 788
Description:
Author: irish
Session Name: Example_Diana_gtfassemblyW1_w2
Genome Assembly: hg38
Creation Date: 2020-02-10
Views: 764
1581321600 764
Description: Juniata Bioinformatics BMKJ The original encoded protein functions as a transcriptional coactivator that increases c-Myc activity and inhibits transforming growth factor-beta (TGF-beta) and nuclear factor kappa-B (NF-kB) signaling. The encoded protein also regulates the stability of cyclin D1 mRNA and may play a role in cell proliferation and cancer progression. There is only one novel variant of this gene, and it is GLU366GLY. In the Puffenberger paper, they used a tool called PolyPhen-2, which can be found on Harvard's website, said the substitution was "probably damaging" with a score of 0.99. Some common characteristics expressed from the mutation are psychomotor delay, intractable seizures/epilepsy, bulbous nose, wide mouth and tongue, broad jaw, short hands, short tapered fingers, and broad thumbs. The first track pictured below shows a graph that serves as a basis for the predicted alternative splicing transcripts shown in the SIB Genes track. The blocks represent exons and the lines indicate introns. Also, there is a vertex for each splice, start, and end. The graph under the previous track shows the relationship between genetic variation and gene expression in multiple human tissues.
Author: bmiller913
Session Name: SNIP1 BMKJ
Genome Assembly: hg19
Creation Date: 2020-02-09
Views: 802
1581235200 802
Description: Children with Usher’s syndrome show no problems during infancy but begin to lose their ability to hear and see during childhood. Patients also present with mild lower body abnormalities. Charles Bonnet syndrome may also occur after affected children contract an infectious illness. Charles Bonnet syndrome is characterized by “decreased visual acuity and vivid visual hallucinations.” Usher’s syndrome is caused by a missense mutation on the 454 position of the Histidyl-tRNA synthetase (HARS) gene in which a tyrosine is replaced with an serine. The normal function of HARS is to charge tRNA with a histidine amino acid. Evidence suggests that the mutation that causes Usher’s syndrome may change the recognition of tRNA codons and/or catalytic activity. The Conservation track shows that this region is conserved across several species, and has amino acid variation in two of these species: Zebrafish (M instead of Y) and Lamprey (V instead of Y). Conservation across a number of species suggests that this region is essential to many vertebrates, and is perhaps why a mutation of this region is so detrimental. The CRISPR targets track shows DNA sequences that are targetable by CRISPR RNA guides. This track is able to show an estimate of how efficient the cleavage would be at the site (Green is the highest) as well as how specific the 20-mer primer is to a specific site in the genome (Black is least specific to just that site). This could be helpful when exploring options for gene therapy or modifications to the gene. The ClinVar Variants track shows the positions of variants in the ClinVar database. This track comes with two subtracks: one for long variants (100 bp or more, most of which are copy number variants) and one for short variants (less than 100 bp). The short variant track color codes variants according to their pathogenicity. Pathogenic variants are colored red, benign variants are colored green, and variants of uncertain significance are colored gray. The long variant track color code variants according to whether the variant is a copy number gain or loss. A user can click on a variant to find more information about the variant including a report that contains an interpretation of the variant and peer reviewed citations.
Author: behreka20
Session Name: Juniata Bioinformatics KB, LL, CM
Genome Assembly: hg19
Creation Date: 2020-02-09
Views: 779
1581235200 779
Description: The tracks in the Synonymous Constraint Public Hub represent regions of protein-coding sequences in which the rate of synonymous substitutions during mammalian evolution has been significantly lower or higher than in the rest of that gene. There are two tracks: Synonymous Constraint Elements (SCEs) have had lower than normal synonymous substitution rates while Synonymous Acceleration Elements (SAEs) have had higher than normal rates. Thanks to Maxim Wolf, Irwin Jungreis and others at MIT for the hub.
Author: PublicSessions
Session Name: SynonymousConstraintHub
Genome Assembly: hg19
Creation Date: 2020-02-07
Views: 1040
1581062400 1040
Description: Various mutations of the gene TUBGCP6 lead to alterations in the amino acid sequence of the subsequent protein, which leads to potential loss-of-function of the protein. This presents pathologically with ubiquitous marked microcephaly, a receding forehead, diminutive anterior fontanelle, and sutural ridging, in addition to other varied symptoms such as cognitive impairment, reduced cranial circumference, and epilepsy.
Author: cadeemlet
Session Name: Juniata Bioinformatics CE & SA
Genome Assembly: hg19
Creation Date: 2020-02-07
Views: 718
1581062400 718
Description: Juniata Bioinformatics SA and CE. Various mutations in gene TUBGCP6 result in microcephaly and chorioretinopathy. This gene codes for a protein that is part of the gamma tubulin complex, which is required for microtubule nucleation at the centrosome, and thus mitosis beginning with interphase. Mutations affecting this protein can lead to symptoms of a receding forehead, diminutive anterior fontanelle, sutural ridging, cognitive delay, visual impairment, diffuse pachygyria, and a hypoplastic cerebellar vermis. SA track: ENCODE Proteogenomics- this track is used to show functional elements of the human genome by using mass spectrometry to determine if translation is occurring by measuring protein produced by transcripts via proteogenomic mapping. This track identifies one exon within the TUBGCP6 gene. It is near the end of the mapped gene and its name is LGAGQTPGELLNPLVLNSVLSK. CE track: GTEx RNA-seq- Displayed also is track for GTEx Gene, which displays the relative gene expression through total mRNA counts of TUBGCP6 in 53 tissue sites distributed throughout the body. What can be derived primarily through this track is that the tissues which exhibit the greatest effects of TUBGCP6 gene mutations also exhibit the highest levels of genetic expression of the gene in healthy individuals, indicating a more prominent role in affected regions.
Author: slca1991
Session Name: Juniata Bioinformatics SA and CE
Genome Assembly: hg19
Creation Date: 2020-02-07
Views: 797
1581062400 797
Description:
Author: prfreire
Session Name: MOLM13 MEIS1 pull down
Genome Assembly: hg19
Creation Date: 2019-09-11
Views: 307
1568188800 307
Description:
Author: ignaciogoyache
Session Name: dia5
Genome Assembly: hg38
Creation Date: 2020-02-14
Views: 776
1581667200 776
Description:
Author: Joseph
Session Name: ICH_rat
Genome Assembly: hg38
Creation Date: 2020-02-03
Views: 770
1580716800 770
Description:
Author: philip.tatman
Session Name: sacCer3RepTimingForReview
Genome Assembly: sacCer3
Creation Date: 2020-01-31
Views: 794
1580457600 794
Description:
Author: philip.tatman
Session Name: sacCer3CDKByPassForReview
Genome Assembly: sacCer3
Creation Date: 2020-01-31
Views: 768
1580457600 768
Description:
Author: dramirez
Session Name: NomLeu3PROseq1st
Genome Assembly: nomLeu3
Creation Date: 2020-04-22
Views: 741
1587542400 741
Description:
Author: EmoryPathCancer
Session Name: hg38_1-28-2020
Genome Assembly: hg38
Creation Date: 2020-01-28
Views: 190
1580198400 190
Description: The nucleosome sequencing data of mouse brain NAC cells from NCBI GEO archive accession GSE54263. The sequence alignment (mm9) coverage profiles (bigWig) of control, stress-susceptible and stress-resilient mice and the nucleosome occupancy change and shift events (BED) are shown.
Author: Erinija
Session Name: mouse NAC nucleosome events (mm9)
Genome Assembly: mm9
Creation Date: 2020-01-27
Views: 828
1580112000 828
Description:
Author: philip.tatman
Session Name: hg38NocReleaseForReview
Genome Assembly: hg38
Creation Date: 2020-01-31
Views: 765
1580457600 765
Description: The disease of interest is Infantile Parkinsonism found on the SLC6A3 gene as the variant IVS9+1G>T. Infantile Parkinsonism is described as is an extremely rare inherited neurological syndrome that presents in early infancy with hypo-kinetic Parkinsonism and dystonia that can lead to fatality. Parkinsonism is a condition that causes movement abnormalities seen in Parkinson's disease such as tremors, slow movement, and impaired speech or muscle stiffness due to he loss of dopamine-containing neurons. Dystonia is a movement disorder in which a person's muscles contract uncontrollably. The SCL6A3 gene provides instruction for making proteins, specifically a dopamine transporter. This protein is found in neurons and is responsible for the transport of dopamine into the cells. Dopamine is a chemical messenger that signals for motivation, behavior, and control movement. The variant changes the first nucleotide of the ninth intron from a G to a T. This mutation would result in a change of the splicing pattern of the DNA. The track that Nicci explored was the CRISPR Targets track which shows the DNA sequences targetable by CRISPR RNA guides using the enzyme Cas9 over the whole human genome. CRISPR technology is a simple yet powerful tool for editing genomes. It allows researchers to easily alter DNA sequences and modify gene function. The track shows all potential -NGG target sites across the genome. Gray or black regions indicate impossible or hard to target areas. The colors blue, red, yellow, and green indicate the predicted chance of cleavage from unable to calculate to high predicted cleavage respectively. Mel explored the Vega Genes track which shows gene annotations from the Vertebrate Genome Annotation (Vega) database. Annotations are divided into two sub tracks from the Vega Human Genome Annotation project. The Two sub tracks include Vega protein coding and noncoding gene annotations as well as Vega annotated pseudogenes and immunoglobulin segments. This track follows the display conventions for gene prediction tracks. Transcript type may be found by clicking on the transcript identifier which forms the outside link to the Vega link detail page. School: Juniata College
Author: NMP94876
Session Name: Homewrok 3 Nicole Piccioni and Mell ended Juanita College Bioinformatics
Genome Assembly: hg19
Creation Date: 2020-02-29
Views: 771
1582963200 771
Description:
Author: keconne
Session Name: TAS2R38 group#5
Genome Assembly: hg19
Creation Date: 2020-01-21
Views: 743
1579593600 743
Description:
Author: nguye5vx
Session Name: Spring 2020 TAS Test VN
Genome Assembly: hg19
Creation Date: 2020-01-21
Views: 756
1579593600 756
Description:
Author: dschmelt
Session Name: Han_Chinese_LCT_Gene
Genome Assembly: hub_1969921_GCA_002180035.3_HG00514_prelim_3.0
Creation Date: 2020-01-20
Views: 793
1579507200 793
Description:
Author: keough
Session Name: monkey_guides
Genome Assembly: chlSab2
Creation Date: 2020-06-30
Views: 332
1593504000 332
Description:
Author: Maksimov_Denis
Session Name: ChromHMM_clusters
Genome Assembly: hg19
Creation Date: 2021-05-11
Views: 299
1620720000 299
Description:
Author: swttalyan
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2020-02-20
Views: 790
1582185600 790
Description:
Author: ilasa.5
Session Name: Day 3 group 5
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 759
1581494400 759
Description:
Author: ManteoAndrade
Session Name: foxp2
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 752
1581494400 752
Description:
Author: keconne
Session Name: CGEMS yeast KEC test
Genome Assembly: sacCer3
Creation Date: 2020-01-15
Views: 760
1579075200 760
Description:
Author: tmitchell
Session Name: Spring 2020 yeast test TM
Genome Assembly: sacCer3
Creation Date: 2020-01-15
Views: 747
1579075200 747
Description:
Author: marti4sm
Session Name: Fall19 Yeast test SM
Genome Assembly: sacCer3
Creation Date: 2020-01-15
Views: 765
1579075200 765
Description: This was an example of a CyVerse hosted assembly hub at the PAG 2020 workshop. The data at CyVerse is hosted at this directory that you can click and see the files: <a href="https://data.cyverse.org/dav-anon/iplant/home/brianleesoe/AssemblyHub_Ex1/">https://data.cyverse.org/dav-anon/iplant/home/brianleesoe/AssemblyHub_Ex1/</a>. In that directory you can click and read the text file named <a href="https://data.cyverse.org/dav-anon/iplant/home/brianleesoe/AssemblyHub_Ex1/hub.txt">hub.txt</a> and see how an assembly hub is a few stanzas that define the names of a genome and where to find binary-indexed raw data to display on the browser. The data is defined by the <code>twoBitPath araTha1.2bit</code> line in the genome stanza and in the <code>bigDataUrl cytoBandIdeo.bigBed</code> and <code>bigDataUrl ensGene.araTha1.bb</code> lines in the track stanzas. There is also an index file on the genes track <code>searchTrix ensGene.araTha1.ix</code> that allows to search the genes by both their names, such as <b> abcc2 </b>and their accessions, such as <b>AT3G50470.1</b>.
Author: brianlee
Session Name: CyVerse_Assembly_Hub
Genome Assembly: hub_1979095_araTha1
Creation Date: 2020-01-13
Views: 769
1578902400 769
Description: This session reflects a PAG 2020 Sunday Session, Genomics of Non-Classical Model Animals, and a speaker Bridgett vonHoldt from Princeton University. The title of Dr. vonHoldt's talk was <b>Everyone Is Your Friend! the Molecular Architecture of Hypersocial Canines</b>. Dr. vonHoldt analyzed wolf and dog populations and discovered a 5-Mb genomic region on chromosome 6 in dogs previously found to be under positive selection in domestic dog breeding. They gathered data on friendliness between a captive wolf and pet dog populations and then examined variants. The region affected by structural variants associated with the exuberant sociability of domestic dogs related to a gene WBSCR17 on chr7 in humans linked to Williams-Beuren syndrome (WBS), a multisystem congenital disorder characterized by hypersocial behavior. Humans with this mutation have a lack of stranger danger and are overly cheerful. This session shows the WBSCR17 gene in human.
Author: brianlee
Session Name: Human_WBSCR17
Genome Assembly: hg38
Creation Date: 2020-01-13
Views: 831
1578902400 831
Description: This session reflects a PAG 2020 Sunday Session, Genomics of Non-Classical Model Animals, and a speaker Claudio V. Mello from Oregon Health and Science University. Dr. Mello's talk was titled <b>What Comparative Studies of Parrot Genomes Can Teach Us about Longevity, Large Brains and Cognition</b>. Dr. Mello identified genomic features under selection in parrots and other long-lived birds that included telomerase activity (TERT), DNA damage repair, control of cell proliferation, cancer, immunity, and anti-oxidative mechanisms. His group also identified many brain-expressed, parrot-specific paralogs with known functions in neural development or vocal-learning brain circuits seen in humans (AUS2). This session shows similar alignment information in the conservation track around human AUTS2 as in one of Dr. Mello’s supplemental slides.
Author: brianlee
Session Name: Human_AUTS2
Genome Assembly: hg38
Creation Date: 2020-01-13
Views: 804
1578902400 804
Description: This session reflects a PAG 2020 Poster by Hao Meng et al. from Peking-Tsinghua Center for Life Sciences, Peking University. The title of the poster was <b>Morphology and Genetics of Kinked Tails of Domestic Cats (Felis catus) in East and Southeast Asia</b>. Hao Meng and colleagues investigated the morphology and genetics of kinked tails in cats. Mutations in coding sequences (CDS) of T and HES7 were identified correlated to the short tails in Manx and Japanese bobtail breeds as well as some feral cats in Asia, However, about one third of short-tailed cats in China do not carry either variant. The poster described a new 1.6 Mb region with non-synonymous mutations were seen, suggesting changes in regulatory regions, the poster concluded. An example of viewing this region on the UCSC Browser with the regulatory Gene Interactions track turned on. In humans the interactions track seem to suggest this region has many long distant interactions spanning across it from distant enhancers.
Author: brianlee
Session Name: Human_HES7
Genome Assembly: hg38
Creation Date: 2020-01-13
Views: 814
1578902400 814
Description: This session reflects a PAG 2020 Saturday Session, Cattle/Sheep/Goat 1, and the speaker George E. Liu from the Animal Genomics and Improvement Laboratory, USDA-ARS. The session title was <b>Comparative Epigenomics and Genotype-Phenotype Association Analyses Revealed Conserved Genetic Architecture underlying Complex Traits between Cattle and Human</b>. Dr. Liu’s lab examined comparative genomics around the histone marks and found that they could transfer cell-type-specific information from the human data to infer similar issues about genes related to certain diseases. A specific example was PIK3CG, a gene high specifically expressed in mononuclear cells was significantly associated with both age-at-menopause in human and daugter-still-birth in cattle. This session shows PIK3CG in human.
Author: brianlee
Session Name: Human_PIK3CG
Genome Assembly: hg38
Creation Date: 2020-01-13
Views: 822
1578902400 822
Description:
Author: ManteoAndrade
Session Name: mi ventana
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 784
1581408000 784
Description:
Author: nguye5vx
Session Name: Fall19 Yeast Test VN
Genome Assembly: sacCer3
Creation Date: 2020-01-19
Views: 789
1579420800 789
Description:
Author: agacita
Session Name: enhancer_dominic
Genome Assembly: hg19
Creation Date: 2020-01-03
Views: 836
1578038400 836
Description:
Author: saadiak2
Session Name: MS
Genome Assembly: mm9
Creation Date: 2019-12-19
Views: 832
1576742400 832
Description:
Author: celiagonzalez98
Session Name: class 2
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 820
1581408000 820
Description:
Author: mecay.1
Session Name: session 2
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 756
1581408000 756
Description:
Author: katerynamarku
Session Name: TAS2R38
Genome Assembly: hg19
Creation Date: 2022-02-01
Views: 49
1643702400 49
Description:
Author: JonMatas
Session Name: Geno3 G4
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 767
1581494400 767
Description:
Author: egrossi
Session Name: Hi-C BAF47
Genome Assembly: hg18
Creation Date: 2019-11-29
Views: 787
1575014400 787
Description: In this specific session of 3 bases with scores missing, at the very end of chrM of mm10, you can see data is lacking from all the related sources (yellow highlight): http://genome.ucsc.edu/s/brianlee/mm10_chrM This explains how there can be a discrepancy between the number of positions covered by the phastCons file and the length of a chromosome. It is likely caused by gaps in the multiple alignment process. Gaps often result from gaps in the reference assembly or variable regions that do not align well between species. Anywhere the multiple alignment is lacking data, phastCons cannot be used to calculated conservation scores.
Author: brianlee
Session Name: mm10_chrM
Genome Assembly: mm10
Creation Date: 2019-11-22
Views: 906
1574409600 906
Description: Juniata Bioinformatics KH JL Lethal neonatal rigidity and multifocal seizure syndrome is characterized by underdeveloped brains and seizures that begin in-utero. Seizures continue after birth and result in death which occurs usually by the age of 4 months. The disease is caused by an insertion of an A in the BRAT1 gene. The normal BRAT1 gene function is to be a master controller of cell cycled checkpoint signaling pathways that are required for cellular responses to DNA damage.
Author: herrkx18
Session Name: Amish Lethal Neonatal rigidity and Seizure syndrome
Genome Assembly: hg19
Creation Date: 2020-02-10
Views: 742
1581321600 742
Description:
Author: mfpalafox
Session Name: CASP8_hg38_UKBsites
Genome Assembly: hg38
Creation Date: 2019-11-04
Views: 850
1572854400 850
Description:
Author: tacazares
Session Name: maxATAC ATAC-seq Data
Genome Assembly: hg38
Creation Date: 2022-04-11
Views: 23
1649664000 23
Description:
Author: Erinija
Session Name: NA12878 WES Benchmark
Genome Assembly: hg19
Creation Date: 2019-11-28
Views: 1055
1574928000 1055
Description:
Author: mia_21
Session Name: mitochonrial cyb mutation
Genome Assembly: hg38
Creation Date: 2019-10-31
Views: 834
1572508800 834
Description:
Author: Brigitte
Session Name: snp hla vph
Genome Assembly: hg38
Creation Date: 2019-10-24
Views: 833
1571904000 833
Description:
Author: cocopow
Session Name: hg38_genes24336
Genome Assembly: hg38
Creation Date: 2019-10-23
Views: 1151
1571817600 1151
Description:
Author: cocopow
Session Name: hg19_LINC00299
Genome Assembly: hg19
Creation Date: 2019-10-25
Views: 803
1571990400 803
Description:
Author: sguc
Session Name: miR-122_KO_genotyping_primers
Genome Assembly: mm10
Creation Date: 2019-10-17
Views: 776
1571299200 776
Description:
Author: ani_davis
Session Name: TAS2R38 group6
Genome Assembly: hg19
Creation Date: 2022-02-01
Views: 40
1643702400 40
Description:
Author: zhangh357
Session Name: hg19_m6A_site
Genome Assembly: hg19
Creation Date: 2019-10-14
Views: 930
1571040000 930
Description:
Author: cocopow
Session Name: dm6_transcripts
Genome Assembly: dm6
Creation Date: 2019-10-09
Views: 837
1570608000 837
Description:
Author: ykumar84
Session Name: mm10_CRE
Genome Assembly: mm10
Creation Date: 2019-10-07
Views: 842
1570435200 842
Description:
Author: ykumar84
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2019-10-04
Views: 953
1570176000 953
Description:
Author: mecay.1
Session Name: session 1
Genome Assembly: hg38
Creation Date: 2020-02-10
Views: 770
1581321600 770
Description:
Author: cocopow
Session Name: hg38_ENCreg
Genome Assembly: hg38
Creation Date: 2019-10-03
Views: 866
1570089600 866
Description:
Author: cocopow
Session Name: hg38_hg19lo_24241C
Genome Assembly: hg38
Creation Date: 2019-10-02
Views: 1097
1570003200 1097
Description:
Author: cocopow
Session Name: hg38_hg19lo_24241B
Genome Assembly: hg38
Creation Date: 2019-10-02
Views: 842
1570003200 842
Description:
Author: cocopow
Session Name: hg38_hg19lo_24241A
Genome Assembly: hg38
Creation Date: 2019-10-02
Views: 860
1570003200 860
Description:
Author: sallen
Session Name: DSP-hg38
Genome Assembly: hg38
Creation Date: 2020-02-11
Views: 762
1581408000 762
Description:
Author: rgmilian
Session Name: hg19_BamHIsite
Genome Assembly: hg19
Creation Date: 2019-09-25
Views: 24
1569398400 24
Description:
Author: rgmilian
Session Name: hg19_20p13_exon_view_flaggedSNPs+exons
Genome Assembly: hg19
Creation Date: 2019-09-24
Views: 19
1569312000 19
Description:
Author: barloweml
Session Name: YeastPracticeMLB
Genome Assembly: sacCer3
Creation Date: 2019-09-24
Views: 849
1569312000 849
Description:
Author: ykumar84
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2019-09-18
Views: 896
1568793600 896
Description:
Author: IsaacGelman
Session Name: mm10_h3k4me3
Genome Assembly: mm10
Creation Date: 2019-11-01
Views: 841
1572595200 841
Description:
Author: nheyer
Session Name: New_wiggles
Genome Assembly: hg38
Creation Date: 2019-11-12
Views: 804
1573545600 804
Description: CircRNA annotation as identified in the publication "Evolutionarily young transposable elements drive circular RNA repertoires" by Gruhl et al. (in preparation). The browser view include an additional track with the repeat dimers surrounding the respective circRNA.
Author: Frenzchen
Session Name: hg38 circRNA annotation
Genome Assembly: hg38
Creation Date: 2019-02-10
Views: 590
1549785600 590
Description: CircRNA and parental gene annotation as identified in the publication "Evolutionarily young transposable elements drive circular RNA repertoires" by Gruhl et al. (in preparation). The browser view include an additional track with the repeat dimers surrounding the respective circRNA.
Author: Frenzchen
Session Name: rn5 circRNA annotation
Genome Assembly: rn5
Creation Date: 2016-09-23
Views: 576
1474617600 576
Description: CircRNA and parental gene annotation as identified in the publication "Evolutionarily young transposable elements drive circular RNA repertoires" by Gruhl et al. (in preparation). The browser view include an additional track with the repeat dimers surrounding the respective circRNA.
Author: Frenzchen
Session Name: mm10 circRNA annotation
Genome Assembly: mm10
Creation Date: 2016-09-23
Views: 638
1474617600 638
Description: CircRNA and parental gene annotation as identified in the publication "Evolutionarily young transposable elements drive circular RNA repertoires" by Gruhl et al. (in preparation). The browser view include an additional track with the repeat dimers surrounding the respective circRNA.
Author: Frenzchen
Session Name: monDom5 circRNA annotation
Genome Assembly: monDom5
Creation Date: 2016-09-23
Views: 582
1474617600 582
Description:
Author: MarcoDS
Session Name: B_to_PSC_reprogramming
Genome Assembly: mm10
Creation Date: 2019-09-16
Views: 832
1568620800 832
Description:
Author: bethpay
Session Name: mm10_il7r_findenhancerpromoter
Genome Assembly: mm10
Creation Date: 2019-09-09
Views: 918
1568016000 918
Description:
Author: rafal.czapiewski@ed.ac.uk
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2019-09-09
Views: 680
1568016000 680
Screenshot not available
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Description:
Author: tolvayha
Session Name: Fall18 Worm test HT
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 1012
1535616000 1012
Screenshot not available
Click Here to view
Description:
Author: tolvayha
Session Name: RHO - Photoreceptor
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 952
1542096000 952
Description:
Author: swarnaseetha
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2019-10-23
Views: 808
1571817600 808
Description: ReMap 2018: An atlas of regulatory regions from an integrative analysis of Human DNA-binding sequencing experiments. Go to <a href="http://remap.univ-amu.fr">ReMap</a> for more info. <a href="https://academic.oup.com/nar/article/46/D1/D267/4602873">ReMap 2018 paper</a>.
Author: Benoit Ballester
Session Name: US_hg38_ReMap2018
Genome Assembly: hg38
Creation Date: 2017-08-11
Views: 2523
1502438400 2523
Description:
Author: rasou2ba
Session Name: hg19 - rs12357257 - Rasoul
Genome Assembly: hg19
Creation Date: 2017-10-31
Views: 1093
1509436800 1093
Description:
Author: pesinojv
Session Name: TAS2R38 group#4
Genome Assembly: hg19
Creation Date: 2018-01-22
Views: 1067
1516608000 1067
Description:
Author: oshgo
Session Name: 14q32Methyl450-GO8
Genome Assembly: hg19
Creation Date: 2015-10-19
Views: 1317
1445241600 1317
Description: GH01J209814 is an enhancer associated with the gene IRF6 (Interferon Regulatory Factor 6). Coding mutations in IRF6 are known to be pathogenic, causing diseases related to cleft lip and cleft palate, such as Van Der Woude Syndrome 1 (VWS1). GH01J209814, an enhancer of IRF6 located ~10kb upstream from the gene, harbors regulatory non-coding variants strongly associated with VWS1.
Author: simonf
Session Name: IRF6 cleft lip enhancer
Genome Assembly: hg19
Creation Date: 2018-11-28
Views: 1028
1543392000 1028
Description:
Author: australia2018
Session Name: hg18_EP_bamSnps_custom
Genome Assembly: hg18
Creation Date: 2018-11-07
Views: 974
1541577600 974
Description:
Author: rafal.czapiewski@ed.ac.uk
Session Name: BAC and FOSMID
Genome Assembly: mm10
Creation Date: 2019-03-27
Views: 900
1553673600 900
Description:
Author: jazmynperez
Session Name: APP
Genome Assembly: hg19
Creation Date: 2018-11-07
Views: 1016
1541577600 1016
Description:
Author: huijing
Session Name: check_pacbio
Genome Assembly: dm6
Creation Date: 2018-11-06
Views: 276
1541491200 276
Description:
Author: cehnouz
Session Name: test1
Genome Assembly: hg19
Creation Date: 2017-08-25
Views: 1131
1503648000 1131
Description:
Author: jtm
Session Name: shiny_app_hg38_v2
Genome Assembly: hg38
Creation Date: 2018-11-05
Views: 2200
1541404800 2200
Description:
Author: ruhollah
Session Name: 18_chr17
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 975
1541059200 975
Description:
Author: ruhollah
Session Name: 20_chr1
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 971
1541059200 971
Description:
Author: ruhollah
Session Name: 14_chr2
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 982
1541059200 982
Description:
Author: ruhollah
Session Name: 17_chr3
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 965
1541059200 965
Description:
Author: ruhollah
Session Name: 19_chr10
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 962
1541059200 962
Description:
Author: ruhollah
Session Name: 16_chr5
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 978
1541059200 978
Description:
Author: ruhollah
Session Name: 6_chr11
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 980
1541059200 980
Description:
Author: ruhollah
Session Name: 8_chr2
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 964
1541059200 964
Description:
Author: ruhollah
Session Name: 11_chr10
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 957
1541059200 957
Description:
Author: ruhollah
Session Name: 12_chr3
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 973
1541059200 973
Description:
Author: ruhollah
Session Name: 13_chr3
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 969
1541059200 969
Description:
Author: ruhollah
Session Name: 15_chr19
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 959
1541059200 959
Description:
Author: ruhollah
Session Name: 7_chr11
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 962
1541059200 962
Description:
Author: ruhollah
Session Name: 9_chr20
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 963
1541059200 963
Description:
Author: ruhollah
Session Name: 5_chr16
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 971
1541059200 971
Description:
Author: ruhollah
Session Name: 4_chr3
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 952
1541059200 952
Description:
Author: ruhollah
Session Name: 10_chr17
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 954
1541059200 954
Description:
Author: ruhollah
Session Name: 3_chr14
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 941
1541059200 941
Description:
Author: ruhollah
Session Name: 2_chr8
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 958
1541059200 958
Description:
Author: ruhollah
Session Name: 1_chr15
Genome Assembly: hg38
Creation Date: 2018-11-01
Views: 942
1541059200 942
Description: This session highlights data from the DASHR v2.0 Hub, created by the Wang lab at the University of Pennsylvania. DASHR is a comprehensive database of expression and processing information to date on all major classes of human small non-coding RNA (sncRNA) genes and mature sncNA annotations, expression levels, sequence and RNA processing information across 185 human tissues, cell types, and cell lines. The region being visualized shows mir-132. A sncRNA linked to post-transcriptional regulation of neuronal cells. More info on DASHR V2.0: http://dashr2.lisanwanglab.org/
Author: Lou
Session Name: DASHRV2
Genome Assembly: hg38
Creation Date: 2018-12-11
Views: 1235
1544515200 1235
Description:
Author: sharma.896
Session Name: TP53
Genome Assembly: hg19
Creation Date: 2018-10-30
Views: 958
1540886400 958
Description: human p53 ChIP-seq coverage depth (tracks) & SISSRs peak calls with associated differential gene expression from published data as of May 2015
Author: cocapo
Session Name: human p53 Binding And Expression Resource (BAER) hub
Genome Assembly: hg19
Creation Date: 2018-10-30
Views: 1148
1540886400 1148
Description:
Author: cocopow
Session Name: hg19_rn6_geneHancer
Genome Assembly: hg19
Creation Date: 2019-01-18
Views: 923
1547798400 923
Description:
Author: cocopow
Session Name: hg38_GeneHancer
Genome Assembly: hg38
Creation Date: 2019-01-28
Views: 995
1548662400 995
Description:
Author: apacis
Session Name: Wu_ARMC5_ChIP_C3G
Genome Assembly: mm10
Creation Date: 2020-10-08
Views: 401
1602144000 401
Description:
Author: BraborecV
Session Name: Moje nastaveni
Genome Assembly: hg19
Creation Date: 2018-10-18
Views: 872
1539849600 872
Description: This sessionView is a collection of tracks centered around large genetic variants (CNVs). The session is organized with gene annotations at the top, followed by the <a href="https://academic.oup.com/nar/article/42/D1/D986/1068860" target="_blank">DGV Struct Var track</a>, which displays variants observed in healthy individuals. The rest of the tracks include different databases that visualize large variants linked to disease phenotypes. The region displayed is a 2Mbp region on chr4 with many pathological variants present.
Author: view
Session Name: VariationCNVs
Genome Assembly: hg19
Creation Date: 2018-10-16
Views: 1017
1539676800 1017
Description: This sessionView is a collection of tracks centered around genetic variation. The collection of tracks primarily displays small variants from multiple databases. The session is organized with tracks having fewer variants with more annotations near the top, and large tracks with fewer annotations near the bottom. The region displayed is the <a href="https://ghr.nlm.nih.gov/gene/SOD1" target="_blank">SOD1 gene</a> which is well annotated and provides an exemplar for this track collection.
Author: view
Session Name: Variation
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 1016
1539158400 1016
Description: This sessionView is a collection of tracks centered around comparative genomics. It primarily consists of multiz alignments and conserved elements/conservation scores identified by <a href="http://compgen.cshl.edu/phast/" target="_blank">phastCons</a>. 18 organisms were chosen for comparison from 100 available vertebrates, sampling clades evenly. The region displayed is an ultra-conserved region in the PCBP2 gene where little divergence is seen throughout all mammals. A similar session is available, <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ConservationDiv" target="_blank">ConservationDiv</a>, which looks at a highly divergent region of the genome.
Author: view
Session Name: ConservationCons
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 1699
1539158400 1699
Description: This sessionView is a collection of tracks centered around comparative genomics. It primarily consists of multiz alignments and conserved elements/conservation scores identified by <a href="http://compgen.cshl.edu/phast/" target="_blank">phastCons</a>. 18 organisms were chosen for comparison from 100 available vertebrates, sampling clades evenly. The region displayed is a <a href="https://www.hhmi.org/news/researchers-identify-human-dna-fast-track" target="_blank">human accelerated region (HAR)</a>. HARs are among the most divergent regions in the genome displaying high divergence even among primates. An alternate region of this session is also available, <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ConservationCons" target="_blank">ConservationCons</a>, which looks at a highly conserved region of the genome.
Author: view
Session Name: ConservationDiv
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 1672
1539158400 1672
Description: This sessionView is a collection of tracks centered around clinical significance. The track composition is similar to the <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=Clinical" target="_blank">Clinical</a> public session, however, the number of tracks has been reduced to increase clarity. Featured tracks include gene annotations, SNVs, CNVs, SVs, and our publications track built by mining sequences and SNPs in publications. The displayed region is focused around the HTT gene, responsible for Huntington's disease and Lopes-Maciel-Rodan syndrome. The large region, which also includes part of the adjacent GRK4 gene, showcases the more concise view of this track in contrast to the <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=Clinical" target="_blank">Clinical</a> session. A similar session is also available which shows the bp resolution CAG repeat linked to Huntington's disease, <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ClinicalZoom" target="_blank">ClinicalZoom</a>.
Author: view
Session Name: ClinicalLite
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 2127
1539158400 2127
Description: This sessionView is a collection of tracks centered around gene support. The region displayed includes the <a href="https://www.ncbi.nlm.nih.gov/gene /3198" target="_blank"> HOXA1</a> gene and its upstream neighbor <a href="https://www.ncbi.nlm.nih.gov/gene/100506311" target="_blank"> HOTAIRM1</a>. The view is organized with different gene annotation approaches at the top, followed by mRNA evidence, and TSS data at the bottom.
Author: view
Session Name: GeneSupport
Genome Assembly: hg19
Creation Date: 2018-10-05
Views: 1481
1538726400 1481
Description:
Author: xingjie
Session Name: FMR1-AFF2-iPSC screening
Genome Assembly: hg38
Creation Date: 2018-10-05
Views: 955
1538726400 955
Description:
Author: EsterCastillo
Session Name: VanesaGarcia_AS
Genome Assembly: hg38
Creation Date: 2018-08-14
Views: 1012
1534233600 1012
Description:
Author: EsterCastillo
Session Name: SandraHernandez_UPF
Genome Assembly: hg38
Creation Date: 2018-12-10
Views: 916
1544428800 916
Description:
Author: EsterCastillo
Session Name: NuriaSala_ICO_AS
Genome Assembly: hg19
Creation Date: 2018-06-18
Views: 1031
1529308800 1031
Description:
Author: EsterCastillo
Session Name: NRCC_HospTxagorritxo_Guiomar
Genome Assembly: hg19
Creation Date: 2018-08-01
Views: 1019
1533110400 1019
Description:
Author: EsterCastillo
Session Name: Meme_ROIs_AmpliSeq
Genome Assembly: hg19
Creation Date: 2018-12-18
Views: 901
1545120000 901
Description:
Author: EsterCastillo
Session Name: MarcSorigue
Genome Assembly: hg19
Creation Date: 2018-08-24
Views: 993
1535097600 993
Description:
Author: EsterCastillo
Session Name: LifeSequencing_JuanMartinez
Genome Assembly: hg19
Creation Date: 2018-05-18
Views: 1015
1526630400 1015
Description:
Author: EsterCastillo
Session Name: LauraMuinelo_CHUS_AS
Genome Assembly: hg38
Creation Date: 2018-05-31
Views: 1028
1527753600 1028
Description:
Author: EsterCastillo
Session Name: HURyC_Gloria_Francisco_25bp_padding
Genome Assembly: hg19
Creation Date: 2019-03-24
Views: 864
1553414400 864
Description:
Author: EsterCastillo
Session Name: HURyC_Gloria_Francisco_10bp_padding
Genome Assembly: hg19
Creation Date: 2019-03-24
Views: 878
1553414400 878
Description:
Author: EsterCastillo
Session Name: HDR_LuciaPerezCarbonero_HospBurgos_NMs
Genome Assembly: hg19
Creation Date: 2018-09-06
Views: 985
1536220800 985
Description:
Author: EsterCastillo
Session Name: HDR_LuciaPerezCarbonero_HospBurgos
Genome Assembly: hg19
Creation Date: 2018-08-24
Views: 973
1535097600 973
Description:
Author: EsterCastillo
Session Name: Genycell_FJD_Tcell
Genome Assembly: hg19
Creation Date: 2019-05-28
Views: 835
1559030400 835
Description:
Author: EsterCastillo
Session Name: Genycell_FJD_Bcell
Genome Assembly: hg19
Creation Date: 2019-05-28
Views: 824
1559030400 824
Description:
Author: EsterCastillo
Session Name: BarbaraTazon_AS_Myeloid
Genome Assembly: hg19
Creation Date: 2018-04-09
Views: 1085
1523260800 1085
Description:
Author: EsterCastillo
Session Name: Arnau_DrViladell_AmpliSeq
Genome Assembly: hg19
Creation Date: 2019-05-08
Views: 823
1557302400 823
Description:
Author: EsterCastillo
Session Name: AnaSebio_HospStPau
Genome Assembly: hg19
Creation Date: 2018-05-01
Views: 1062
1525161600 1062
Description:
Author: EsterCastillo
Session Name: AnaOsorio_AS_CNIO
Genome Assembly: hg19
Creation Date: 2018-05-24
Views: 1049
1527148800 1049
Description:
Author: EsterCastillo
Session Name: AmpliSeq_Meme_Concierge2
Genome Assembly: hg19
Creation Date: 2019-02-11
Views: 951
1549872000 951
Description:
Author: EsterCastillo
Session Name: AmpliSeq_Meme_Concierge
Genome Assembly: hg19
Creation Date: 2019-01-31
Views: 910
1548921600 910
Description:
Author: EsterCastillo
Session Name: AmpliSeq Focus
Genome Assembly: hg19
Creation Date: 2018-08-20
Views: 999
1534752000 999
Description:
Author: EsterCastillo
Session Name: AmpliSeq Cancer HotSpots v2
Genome Assembly: hg19
Creation Date: 2018-06-06
Views: 993
1528272000 993
Description:
Author: EsterCastillo
Session Name: 12Oct_todos37g_DLW
Genome Assembly: hg19
Creation Date: 2019-01-20
Views: 901
1547971200 901
Description:
Author: tzaro
Session Name: mm9
Genome Assembly: mm9
Creation Date: 2018-10-08
Views: 1019
1538985600 1019
Description:
Author: zheyangshan
Session Name: hg19 GRO-seq EGFR shjun
Genome Assembly: hg19
Creation Date: 2019-01-16
Views: 852
1547625600 852
Description:
Author: sajjeev
Session Name: sj39_40
Genome Assembly: hg19
Creation Date: 2019-01-17
Views: 798
1547712000 798
Description:
Author: cocopow
Session Name: mm10_limbs
Genome Assembly: mm10
Creation Date: 2019-01-15
Views: 937
1547539200 937
Description:
Author: emmawentworth
Session Name: Adult-Mouse-Adipose
Genome Assembly: mm10
Creation Date: 2019-04-29
Views: 828
1556524800 828
Description:
Author: Heywhoyou22
Session Name: AMD SNP C9 2
Genome Assembly: hg19
Creation Date: 2018-10-02
Views: 938
1538467200 938
Description:
Author: brittatj
Session Name: Fall19 Yeast test(TB)
Genome Assembly: sacCer3
Creation Date: 2019-08-27
Views: 777
1566892800 777
Description:
Author: Matteo
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2018-10-02
Views: 964
1538467200 964
Description:
Author: cocapo
Session Name: dense2pack
Genome Assembly: hg38
Creation Date: 2018-09-26
Views: 946
1537948800 946
Description:
Author: akhoke
Session Name: KMT2E/SRPK2_2
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 985
1537862400 985
Description:
Author: mazawm
Session Name: hg19#19SingleNucleotideResolution
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 910
1537862400 910
Description:
Author: benbeijs
Session Name: AMD SNP (JSB), CFH Exercise 2 (SNPs)
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 959
1537862400 959
Description:
Author: anglemem
Session Name: AMD SNP 2
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 987
1537862400 987
Description:
Author: akhoke
Session Name: KMT2E/SRPK2
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 964
1537862400 964
Description:
Author: benbeijs
Session Name: AMD SNP (JSB), CFH Exercise 1
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 965
1537862400 965
Description:
Author: mazawm
Session Name: hg19#19GenomicContext
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 932
1537862400 932
Description:
Author: Heywhoyou22
Session Name: AMD SNP C9 zoom
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 940
1537862400 940
Description:
Author: Heywhoyou22
Session Name: AMD SNP C9
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 979
1537862400 979
Description:
Author: Heywhoyou22
Session Name: HGD
Genome Assembly: hg19
Creation Date: 2018-09-25
Views: 972
1537862400 972
Description:
Author: mazawm
Session Name: hg19HGDmazawm2
Genome Assembly: hg19
Creation Date: 2018-09-19
Views: 952
1537344000 952
Description:
Author: akhoke
Session Name: HGD2
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 952
1537257600 952
Description:
Author: benbeijs
Session Name: UCSC/ApE (JSB) Exercise, Exon 10
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 944
1537257600 944
Description:
Author: white4cj
Session Name: Fall 19 Yeast Test (JW, PA, MG)
Genome Assembly: sacCer3
Creation Date: 2019-08-27
Views: 802
1566892800 802
Description:
Author: akhoke
Session Name: HGD
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 939
1537257600 939
Description:
Author: mazawm
Session Name: hg19HGDmazawm
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 980
1537257600 980
Description:
Author: anglemem
Session Name: HGD Gene (EMA)
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 991
1537257600 991
Description:
Author: benbeijs
Session Name: UCSC/ApE (JSB) Exercise
Genome Assembly: hg19
Creation Date: 2018-09-18
Views: 947
1537257600 947
Description:
Author: yangyangyh
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2018-09-16
Views: 985
1537084800 985
Description:
Author: dcaetan2
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2017-12-05
Views: 1095
1512460800 1095
Description:
Author: cocopow
Session Name: hg19_chrM
Genome Assembly: hg19
Creation Date: 2019-08-13
Views: 870
1565683200 870
Description:
Author: ruifang
Session Name: TAC3
Genome Assembly: hg38
Creation Date: 2019-08-11
Views: 829
1565510400 829
Description:
Author: cocopow
Session Name: panTro6_refSeq
Genome Assembly: panTro6
Creation Date: 2019-08-20
Views: 826
1566288000 826
Description:
Author: Alexandra Despang
Session Name: PWD_SNPS_mm10
Genome Assembly: mm10
Creation Date: 2016-01-15
Views: 836
1452844800 836
Description:
Author: mziegler
Session Name: encode_Accessibility _4
Genome Assembly: hg19
Creation Date: 2018-09-06
Views: 1056
1536220800 1056
Description:
Author: mziegler
Session Name: encode_Accessibility _3
Genome Assembly: hg19
Creation Date: 2018-09-06
Views: 1046
1536220800 1046
Description:
Author: mziegler
Session Name: encode_Accessibility _2
Genome Assembly: hg19
Creation Date: 2018-09-06
Views: 1026
1536220800 1026
Description:
Author: mazawm
Session Name: hg19withDSPandMYBPC1
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 976
1536048000 976
Description:
Author: akhoke
Session Name: hg19_9/4/18
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 980
1536048000 980
Description:
Author: Heywhoyou22
Session Name: DSP
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 1012
1536048000 1012
Description:
Author: Heywhoyou22
Session Name: MYBPC1
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 998
1536048000 998
Description:
Author: zheyangshan
Session Name: hg19 BCL2
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 842
1536048000 842
Description:
Author: abby.stapleton
Session Name: Spring17 Mouse Test
Genome Assembly: mm9
Creation Date: 2019-07-29
Views: 802
1564387200 802
Description:
Author: abby.stapleton
Session Name: Spring17 Human Test
Genome Assembly: hg38
Creation Date: 2019-07-29
Views: 791
1564387200 791
Description:
Author: abby.stapleton
Session Name: Spring17 Worm Test
Genome Assembly: ce11
Creation Date: 2019-07-29
Views: 783
1564387200 783
Description:
Author: abby.stapleton
Session Name: Spring17 Yeast Test
Genome Assembly: sacCer3
Creation Date: 2019-07-29
Views: 795
1564387200 795
Description:
Author: jwjiao
Session Name: PRDM16KO1_E15WT1.anno
Genome Assembly: hg38
Creation Date: 2019-08-05
Views: 799
1564992000 799
Description:
Author: xgwZRyfWLidWxULv
Session Name: RPE_public
Genome Assembly: hg19
Creation Date: 2019-01-15
Views: 860
1547539200 860
Description:
Author: elencampoy
Session Name: HsInv0379
Genome Assembly: hg19
Creation Date: 2021-02-25
Views: 319
1614240000 319
Description:
Author: bondurlc
Session Name: TAS2R38 group 3
Genome Assembly: hg19
Creation Date: 2018-09-03
Views: 979
1535961600 979
Description:
Author: ruhollah
Session Name: hg19_118Chr22_nmt4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 923
1547452800 923
Description:
Author: ruhollah
Session Name: hg19_100Chr19_nmt3
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 916
1547452800 916
Description:
Author: mazawm
Session Name: mazawm/hg19
Genome Assembly: hg19
Creation Date: 2018-08-31
Views: 948
1535702400 948
Description:
Author: erhuoyi
Session Name: suva
Genome Assembly: hg38
Creation Date: 2018-08-31
Views: 990
1535702400 990
Description:
Author: benbeijs
Session Name: MYBPC1 (JSB) Assignment
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 974
1535616000 974
Description:
Author: akhoke
Session Name: Human Genome DSP
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 967
1535616000 967
Description:
Author: anglemem
Session Name: EmilyAnglemyer 8/30 In class browser assignment
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 973
1535616000 973
Description:
Author: Morgan_T
Session Name: Aug30 Asignment MT
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 995
1535616000 995
Description:
Author: stjacqrm
Session Name: Spring18_DSP_RMSJ
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 975
1535616000 975
Description:
Author: benbeijs
Session Name: CGEMS Worm (JSB) Test
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 1032
1535616000 1032
Description:
Author: sschuma
Session Name: Fall18 DSP (SS)
Genome Assembly: hg19
Creation Date: 2018-08-30
Views: 961
1535616000 961
Description:
Author: akhoke
Session Name: Yeast AKH
Genome Assembly: sacCer3
Creation Date: 2018-08-30
Views: 994
1535616000 994
Description:
Author: erick.gabriel
Session Name: ICD-1 gene (by Erick)
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 961
1535616000 961
Description:
Author: mazawm
Session Name: mazawm8/30
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 949
1535616000 949
Description:
Author: akhoke
Session Name: CGEMS yeast AKH test
Genome Assembly: sacCer3
Creation Date: 2018-08-30
Views: 971
1535616000 971
Description:
Author: Morgan_T
Session Name: Fall18 Yeast test M.T.
Genome Assembly: sacCer3
Creation Date: 2018-08-30
Views: 984
1535616000 984
Description:
Author: foxaa
Session Name: Fall18 Worm test AF
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 947
1535616000 947
Description:
Author: Heywhoyou22
Session Name: Spring18 Worm test MRK
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 983
1535616000 983
Description:
Author: stjacqrm
Session Name: Spring18_Yeast_test_RMSJ
Genome Assembly: sacCer3
Creation Date: 2018-08-30
Views: 938
1535616000 938
Description:
Author: hammer
Session Name: piranha-eclip_sclip2
Genome Assembly: hg38
Creation Date: 2018-08-30
Views: 984
1535616000 984
Description:
Author: sschuma
Session Name: Fall18 Yeast Test (SS)
Genome Assembly: sacCer3
Creation Date: 2018-08-30
Views: 943
1535616000 943
Description:
Author: Heywhoyou22
Session Name: forenke2
Genome Assembly: hg38
Creation Date: 2018-11-29
Views: 1008
1543478400 1008
Description:
Author: Heywhoyou22
Session Name: forenke
Genome Assembly: hg38
Creation Date: 2018-11-29
Views: 972
1543478400 972
Description:
Author: Boonede
Session Name: TAS2R38#6
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 921
1547452800 921
Description:
Author: anzelm
Session Name: hg19-hrc3
Genome Assembly: hg19
Creation Date: 2018-03-19
Views: 1068
1521446400 1068
Description:
Author: anzelm
Session Name: hg19-180-10-3
Genome Assembly: hg19
Creation Date: 2018-03-19
Views: 1029
1521446400 1029
Description:
Author: anglemem
Session Name: MYBPC1 Anglemyer
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 976
1536048000 976
Description:
Author: anglemem
Session Name: DSP
Genome Assembly: hg19
Creation Date: 2018-09-05
Views: 994
1536134400 994
Description:
Author: anglemem
Session Name: 10/2 custom track assignment
Genome Assembly: hg19
Creation Date: 2018-10-02
Views: 1031
1538467200 1031
Description:
Author: allisontaggart
Session Name: hg19_BPs
Genome Assembly: hg19
Creation Date: 2017-01-18
Views: 1359
1484726400 1359
Description:
Author: alexc
Session Name: CytoSettings
Genome Assembly: hg19
Creation Date: 2018-03-13
Views: 1012
1520928000 1012
Description:
Author: alexaabdelaziz
Session Name: colored_clusters_Alexa_AA
Genome Assembly: hg19
Creation Date: 2017-02-24
Views: 1311
1487923200 1311
Description:
Author: akhoke
Session Name: MYBPC1
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 968
1536048000 968
Description:
Author: akhoke
Session Name: DSP
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 984
1536048000 984
Description:
Author: akhoke
Session Name: CRLs3
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 930
1542096000 930
Description:
Author: akhoke
Session Name: CRLs2
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 945
1542096000 945
Description:
Author: akhoke
Session Name: CRLs
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 927
1542096000 927
Description:
Author: akhoke
Session Name: AMD SNP Custom Track
Genome Assembly: hg19
Creation Date: 2018-10-03
Views: 967
1538553600 967
Description:
Author: airibarren.1
Session Name: Ventana buena + Hubs
Genome Assembly: hg38
Creation Date: 2018-02-06
Views: 1031
1517904000 1031
Description:
Author: airibarren.1
Session Name: Regulatory elements; epigentic marks
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1070
1519632000 1070
Description:
Author: airibarren.1
Session Name: Oregano
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1085
1519632000 1085
Description:
Author: airibarren.1
Session Name: NHLF
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1096
1519632000 1096
Description:
Author: airibarren.1
Session Name: NHEK
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1059
1519632000 1059
Description:
Author: airibarren.1
Session Name: K562
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1124
1519632000 1124
Description:
Author: airibarren.1
Session Name: HUVEC
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1084
1519632000 1084
Description:
Author: airibarren.1
Session Name: HSMM
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1067
1519632000 1067
Description:
Author: airibarren.1
Session Name: H1-hESC
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1076
1519632000 1076
Description:
Author: airibarren.1
Session Name: Genes and gene expression
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1089
1519632000 1089
Description:
Author: airibarren.1
Session Name: GM12878
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1069
1519632000 1069
Description:
Author: airibarren.1
Session Name: Evolution
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1126
1519632000 1126
Description:
Author: airibarren.1
Session Name: Ensembl segment
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1082
1519632000 1082
Description:
Author: airibarren.1
Session Name: Ensembl activity
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1091
1519632000 1091
Description:
Author: airibarren.1
Session Name: ChIp
Genome Assembly: hg19
Creation Date: 2018-02-26
Views: 1092
1519632000 1092
Description:
Author: agacita
Session Name: Regulatory_Variants_Heart_333
Genome Assembly: hg19
Creation Date: 2018-05-11
Views: 1230
1526025600 1230
Description:
Author: agacita
Session Name: Regulatory_Var_89912022_labels
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 1135
1525939200 1135
Description:
Author: agacita
Session Name: Regulatory_Var_89912022_Final
Genome Assembly: hg19
Creation Date: 2018-05-11
Views: 1211
1526025600 1211
Description:
Author: agacita
Session Name: Regulatory_Var_89912022
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 1053
1525939200 1053
Description:
Author: afanas
Session Name: hg19-H3K27Ac
Genome Assembly: hg19
Creation Date: 2017-11-27
Views: 1051
1511769600 1051
Description:
Author: hongboyang@ucsd.edu
Session Name: 2019sarcoma_CDK4
Genome Assembly: hg38
Creation Date: 2019-08-20
Views: 811
1566288000 811
Description:
Author: gerbermm
Session Name: TAS2R38 Grp6 MG
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 937
1547452800 937
Description:
Author: hammer
Session Name: piranha-eclip_sclip
Genome Assembly: hg38
Creation Date: 2018-08-27
Views: 977
1535356800 977
Description:
Author: hkao
Session Name: SMARCC1 4-3
Genome Assembly: hg38
Creation Date: 2019-07-09
Views: 822
1562659200 822
Description:
Author: hammer
Session Name: ablife
Genome Assembly: hg38
Creation Date: 2018-08-27
Views: 991
1535356800 991
Description: RNA-seq in cell lines were carried out as follows: after MGC803 cells were transfected with siRNA against circMRPS35 or corresponding control in triplicate, total RNA were extracted and cDNA libraries were constructed for rRNA-depleted sample using the NEBNext® Ultra™ Directional RNA Library Prep Kit for Illumina according to the manufacturer’s instructions, and were sequenced on Illumina HiSeq Xten. RPKM method was used to determine the gene expression. The raw data were analyzed according to the DESeq2 method. Pathway analysis was used to find out the significant pathway of the differential genes according to KEGG database. For gene ontology (GO) analysis, we downloaded the GO annotations from NCBI, UniProt and the Gene Ontology. Fisher’s exact test was applied to identify the significant GO categories and FDR was used to correct the p-values.
Author: jieMM
Session Name: hg38_FINAL
Genome Assembly: hg38
Creation Date: 2019-11-05
Views: 951
1572940800 951
Description:
Author: leonic
Session Name: bing li et al. m6A RIP
Genome Assembly: mm10
Creation Date: 2018-08-21
Views: 1016
1534838400 1016
Description:
Author: zxtzhangqian
Session Name: 3a-140-IDH
Genome Assembly: mm9
Creation Date: 2018-08-20
Views: 1028
1534752000 1028
Description:
Author: davis2018
Session Name: hg19_example_asl
Genome Assembly: hg19
Creation Date: 2018-08-20
Views: 986
1534752000 986
Description:
Author: ruhollah
Session Name: hg19_29ChrX_nmt23
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 905
1543219200 905
Description:
Author: ruhollah
Session Name: hg19_13Chr3_nmt23
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 917
1543219200 917
Description: This session shows how the multi-region tool allows you to swap in alternate sequences into the main sequence, when desired. For example, if you click the "mutli-region" button under the Browser image (or go to the top "View" menu and then select it), you can paste chr5_KI270794v1_alt in the "Show one alternate haplotype, placed on its chromosome, using ID:" box and then also click the " Highlight alternating regions in multi-region view" box and the result is this session.<br> <br> This issue came up when a user was doing PCR and found two results, one on chr5 and one on chr5_KI270794v1_alt and wanted to understand the meaning of the chr5_..._alt PCR hit. On our gateway page for hg38 (http://genome.ucsc.edu/cgi-bin/hgGateway?db=hg38) you will find an Assembly Details section, which will explain how the Genome Reference Consortium (GRC) in building a reference assembly observed several human chromosomal regions exhibit sufficient variability to prevent adequate representation by a single sequence and to address this issue, the GRCh38/hg38 assembly provides alternate sequence for selected variant regions through the inclusion of alternate loci scaffolds (or alt loci). The assembly contains 261 alt loci, where this chr5_KI270794v1_alt is one of the regions that just happens to be right around the specific gene of interest. This GRC Assembly Terminology page is useful in learning the definition of alternate sequences: https://www.ncbi.nlm.nih.gov/grc/help/definitions/ The answer to the user was that in some ways one can interpret this additional chr5_KI270794v1_alt PCR result as a representation where the GRC determined an additional sequence provides an alternate representation of the same locus. And this session helps to visualize that alternate sequence in place around the rest of the chromosome. <img src="https://groups.google.com/a/soe.ucsc.edu/group/genome/attach/d6cb8d335b5b/image.png?part=0.1&authuser=0" alt="PCR results">
Author: brianlee
Session Name: hg38_ chr5_KI270794v1_alt
Genome Assembly: hg38
Creation Date: 2018-08-10
Views: 1007
1533888000 1007
Description:
Author: chubukovp
Session Name: hg19_SMC_upload
Genome Assembly: hg19
Creation Date: 2016-10-14
Views: 1354
1476432000 1354
Description:
Author: anglemem
Session Name: CGEMS Worm EA Test
Genome Assembly: ce11
Creation Date: 2018-08-30
Views: 970
1535616000 970
Description:
Author: ruhollah
Session Name: hg19_170Chr1_nmt4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 902
1547452800 902
Description:
Author: ruhollah
Session Name: hg19_173Chr2_nmt4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 905
1547452800 905
Description: RNA-seq data from Lee HC et al. Open Biol. 2020 Feb. Molecular anatomy of the pre-primitive-streak chick embryo.
Author: stern_lab
Session Name: Lee HC et al. chick pre-primitive streak
Genome Assembly: galGal5
Creation Date: 2020-06-25
Views: 695
1593072000 695
Description:
Author: cocopow
Session Name: hg38_bw_GSM1131536
Genome Assembly: hg38
Creation Date: 2019-03-07
Views: 847
1551945600 847
Description:
Author: cocopow
Session Name: hg38_HGMDvsCurated
Genome Assembly: hg38
Creation Date: 2019-03-06
Views: 851
1551859200 851
Description:
Author: cocopow
Session Name: danRer11_bw_GSM1131536
Genome Assembly: danRer11
Creation Date: 2019-03-07
Views: 819
1551945600 819
Description:
Author: cocopow
Session Name: mm10_bejTB
Genome Assembly: mm10
Creation Date: 2019-08-01
Views: 763
1564646400 763
Description:
Author: ascendgene
Session Name: 60genes panel chrX
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 995
1532505600 995
Description:
Author: ascendgene
Session Name: 60genes panel chr22
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 967
1532505600 967
Description:
Author: ascendgene
Session Name: 60genes panel chr17
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 976
1532505600 976
Description:
Author: ascendgene
Session Name: 60genes panel chr16
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 969
1532505600 969
Description:
Author: ascendgene
Session Name: 60genes panel chr14
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 999
1532505600 999
Description:
Author: Gabriel
Session Name: LDTF-Kras
Genome Assembly: mm10
Creation Date: 2020-03-26
Views: 710
1585209600 710
Description:
Author: ascendgene
Session Name: 60genes panel chr18
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 953
1532505600 953
Description:
Author: dorothyzhao
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2019-08-13
Views: 796
1565683200 796
Description:
Author: ascendgene
Session Name: 60genes panel chr19
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 984
1532505600 984
Description: ReMap 2020: An atlas of regulatory regions from an integrative analysis Arabidopsis thaliana DNA-binding sequencing experiments. Go to <a href="http://remap.univ-amu.fr">ReMap</a> for more info.
Author: Benoit Ballester
Session Name: US_ReMap2020_Thaliana
Genome Assembly: hub_1936559_araTha1
Creation Date: 2019-08-29
Views: 5313
1567065600 5313
Description:
Author: ascendgene
Session Name: 60genes panel chr15
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 994
1532505600 994
Description:
Author: dantaki
Session Name: sv2_merge_debug
Genome Assembly: hg19
Creation Date: 2018-11-08
Views: 949
1541664000 949
Description:
Author: dantaki
Session Name: ccr_hg19
Genome Assembly: hg19
Creation Date: 2018-12-12
Views: 943
1544601600 943
Description:
Author: ascendgene
Session Name: 60genes panel chr6
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 994
1532505600 994
Description:
Author: danrlu
Session Name: Fuller_paper
Genome Assembly: dm6
Creation Date: 2019-10-25
Views: 928
1571990400 928
Description:
Author: mersedehr
Session Name: NSUN4_v2_rs66575205
Genome Assembly: hg19
Creation Date: 2018-06-15
Views: 968
1529049600 968
Description: This sessionView is a collection of tracks centered around epigenomics. The profiles displayed primarily belong to the H1 cell line, however different origin samples may be chosen in the track configurations. The display is organized with gene annotations and mRNA abundance first, followed by regulatory profiles in the form of <a href="https://www.ncbi.nlm.nih.gov/pubmed/21441907" target="_blank">chromatin states (ChromHMM)</a>. These data are followed by ChIP-seq tracks exploring various transcription factors and regulatory regions/promoter tracks looking at DNase/CpG/methylation. The final tracks are the <a href="https://www.nature.com/articles/ng.2653" target="_blank">GTEx combined eQTL</a>, which identifies genetic variants likely affecting proximal gene expression, and the GTEx Gene Expression, which shows median gene expression levels in 51 tissues and 2 cell lines. The region visualized is a ~12,000bp window surrounding the <a href="https://ghr.nlm.nih.gov/gene/BRCA1" target="_blank">BRCA1 gene</a> transcription start site. <a href="https://ghr.nlm.nih.gov/gene/BRCA1" target="_blank">BRCA1</a> is a tumor suppressor and housekeeping gene linked to increased susceptibility to breast cancer when <a href="https://www.ncbi.nlm.nih.gov/pubmed/16846527" target="_blank">certain epigenomic markers are present</a>.
Author: view
Session Name: Epigenomics
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 1095
1539158400 1095
Description: This sessionView is a collection of tracks centered around clinical significance. Featured tracks include gene annotations, SNVs, CNVs, SVs, and our publications track built by mining sequences and SNPs in publications. The displayed region is a 294bp window looking at the CAG repeat linked to Huntington’s disease in the HTT gene. Two similar sessions are also available: <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ClinicalLite" target="_blank">ClinicalLite</a> which has a reduced number of tracks for increased clarity, and <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=Clinical" target="_blank">Clinical</a> which is the most informative clinical view.
Author: view
Session Name: ClinicalZoom
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 8118
1539158400 8118
Description: This sessionView is a collection of tracks centered around clinical significance. Featured tracks include gene annotations, SNVs, CNVs, SVs, a cancer mutation database and our publications track built by mining sequences and SNPs in publications. The displayed region is focused around the HTT gene, responsible for Huntington's disease and Lopes-Maciel-Rodan syndrome. Two similar sessions are also available: <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ClinicalZoom" target="_blank">ClinicalZoom</a> which shows the bp resolution CAG repeat linked to Huntington's disease, as well as <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doOtherUser=submit&hgS_otherUserName=view&hgS_otherUserSessionName=ClinicalLite" target="_blank">ClinicalLite</a> which has a reduced number of tracks for increased clarity.
Author: view
Session Name: Clinical
Genome Assembly: hg19
Creation Date: 2018-10-10
Views: 2605
1539158400 2605
Description: This sessionView is a collection of tracks centered around assembly support. The region displayed includes a reported GRC incident on hg19 which was then patched. It also showcases a gap which can lead to inconsistent or missing data on existing tracks; as seen by the Mappability and 1000 Genomes Project Accessible Regions tracks.
Author: view
Session Name: AssemblySupport
Genome Assembly: hg19
Creation Date: 2018-10-05
Views: 993
1538726400 993
Description:
Author: ascendgene
Session Name: 60genes panel chr13
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 977
1532505600 977
Description:
Author: ascendgene
Session Name: 60genes panel chr12
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 1020
1532505600 1020
Description:
Author: ascendgene
Session Name: 60genes panel chr10
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 1059
1532419200 1059
Description:
Author: csitans
Session Name: Mouse ncRNA HSCs
Genome Assembly: mm9
Creation Date: 2017-06-19
Views: 1042
1497859200 1042
Description:
Author: cschee
Session Name: RNA_HEMa
Genome Assembly: hg19
Creation Date: 2016-06-14
Views: 1237
1465891200 1237
Description:
Author: cschee
Session Name: RNA_A375
Genome Assembly: hg19
Creation Date: 2016-06-14
Views: 1249
1465891200 1249
Description:
Author: cschee
Session Name: A375_K27me3
Genome Assembly: hg19
Creation Date: 2016-06-14
Views: 1277
1465891200 1277
Description:
Author: cschee
Session Name: A375_K27Ac
Genome Assembly: hg19
Creation Date: 2016-06-15
Views: 1249
1465977600 1249
Description:
Author: cschee
Session Name: A375_Input_21092016
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 1328
1474444800 1328
Description:
Author: cschee
Session Name: A375_Input
Genome Assembly: hg19
Creation Date: 2016-06-15
Views: 1206
1465977600 1206
Description:
Author: cosmid88
Session Name: SRY-SOX9-ChIP-Chip
Genome Assembly: mm8
Creation Date: 2013-06-29
Views: 1685
1372492800 1685
Description:
Author: ascendgene
Session Name: 60genes panel chr9
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 990
1532419200 990
Description:
Author: cyoung
Session Name: Young, Fall17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-09-10
Views: 1051
1505030400 1051
Description:
Author: cyoung
Session Name: Fall17 Bio630 CY test
Genome Assembly: mm9
Creation Date: 2017-09-13
Views: 1025
1505289600 1025
Description:
Author: cyoung
Session Name: Bio630 CRX variants Young
Genome Assembly: hg38
Creation Date: 2017-09-26
Views: 1086
1506412800 1086
Description:
Author: ascendgene
Session Name: 60genes panel chr8
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 986
1532505600 986
Description:
Author: ascendgene
Session Name: 60genes panel chr7
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 997
1532419200 997
Description:
Author: ascendgene
Session Name: 60genes panel chr5
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 1302
1532419200 1302
Description:
Author: ddunican
Session Name: MBD3 WT v KO medip-seq ion_torrent mm9
Genome Assembly: mm9
Creation Date: 2016-09-26
Views: 1273
1474876800 1273
Description:
Author: ascendgene
Session Name: 60genes panel chr4
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 1028
1532419200 1028
Description:
Author: ascendgene
Session Name: 60genes panel chr3
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 989
1532419200 989
Description:
Author: ascendgene
Session Name: 60genes panel chr2
Genome Assembly: hg19
Creation Date: 2018-07-24
Views: 1031
1532419200 1031
Description:
Author: Welekie
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2020-05-20
Views: 676
1589961600 676
Description:
Author: simonwang612
Session Name: worm_ChIP_seq_L4_0716
Genome Assembly: ce10
Creation Date: 2018-07-16
Views: 1013
1531728000 1013
Description:
Author: olena
Session Name: OTC-regulatory
Genome Assembly: hg19
Creation Date: 2018-07-13
Views: 966
1531468800 966
Description:
Author: jtm
Session Name: shiny_app_mm10_v1
Genome Assembly: mm10
Creation Date: 2018-07-11
Views: 2067
1531296000 2067
Description:
Author: jtm
Session Name: shiny_app_hg38_v1
Genome Assembly: hg38
Creation Date: 2018-07-11
Views: 4287
1531296000 4287
Description:
Author: Kyle@Arkell_Lab
Session Name: hg38_ZIC2_3'UTR_RNA_Annotation
Genome Assembly: hg38
Creation Date: 2018-07-10
Views: 1012
1531209600 1012
Description:
Author: tonyzeng
Session Name: apa
Genome Assembly: hg19
Creation Date: 2018-07-06
Views: 1125
1530864000 1125
Description:
Author: speese
Session Name: dm6 FlyVar track
Genome Assembly: dm6
Creation Date: 2018-07-05
Views: 759
1530777600 759
Description:
Author: Mouro_81
Session Name: B6J vs 129S1 SNPs at Lrrfip2/Mlh1
Genome Assembly: mm10
Creation Date: 2017-05-15
Views: 1240
1494835200 1240
Description:
Author: MeganDurham
Session Name: BRAF
Genome Assembly: hg19
Creation Date: 2018-04-24
Views: 1017
1524556800 1017
Description:
Author: Leif.Benner
Session Name: Leif_session
Genome Assembly: dm3
Creation Date: 2015-04-11
Views: 1189
1428739200 1189
Description:
Author: Lab252
Session Name: Roche_et_al_NAR_44_19_9315_2016
Genome Assembly: hg19
Creation Date: 2016-07-04
Views: 1362
1467619200 1362
Description:
Author: Kurotaki
Session Name: mm10 tachibana
Genome Assembly: mm10
Creation Date: 2016-05-12
Views: 1357
1463040000 1357
Description:
Author: Ketty
Session Name: hg38_ChiPseq CRISPR clones
Genome Assembly: hg38
Creation Date: 2019-06-20
Views: 828
1561017600 828
Description:
Author: KateLawrensonCSHS
Session Name: OCAC_CIMBA_Oncoarray
Genome Assembly: hg19
Creation Date: 2016-05-03
Views: 1663
1462262400 1663
Description:
Author: Vizoso1
Session Name: UBP10
Genome Assembly: sacCer3
Creation Date: 2017-07-25
Views: 1223
1500969600 1223
Description:
Author: Vizoso1
Session Name: RSA4
Genome Assembly: sacCer3
Creation Date: 2017-07-25
Views: 1138
1500969600 1138
Description:
Author: Vizoso1
Session Name: NMD3
Genome Assembly: sacCer3
Creation Date: 2017-07-25
Views: 1134
1500969600 1134
Description:
Author: Vizoso1
Session Name: ENP1
Genome Assembly: sacCer3
Creation Date: 2017-07-25
Views: 1153
1500969600 1153
Description:
Author: Tung
Session Name: ndst1_10snp
Genome Assembly: hg38
Creation Date: 2018-04-13
Views: 1369
1523606400 1369
Screenshot not available
Click Here to view
Description:
Author: Toma Matveeva
Session Name: CGEMS #1
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1342
1469088000 1342
Screenshot not available
Click Here to view
Description:
Author: Tao Zhang
Session Name: chicken lncRNA
Genome Assembly: hub_30425_galGal4
Creation Date: 2016-11-28
Views: 1316
1480320000 1316
Description:
Author: Robin
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2016-10-04
Views: 1282
1475568000 1282
Description:
Author: Robin
Session Name: CHPv3 versus Sanger/CHPv2
Genome Assembly: hg19
Creation Date: 2016-07-11
Views: 1255
1468224000 1255
Description:
Author: Rahman.team
Session Name: CART38A
Genome Assembly: hg38
Creation Date: 2018-10-30
Views: 974
1540886400 974
Description:
Author: Rahman.team
Session Name: CART37A
Genome Assembly: hg19
Creation Date: 2018-10-30
Views: 1005
1540886400 1005
Description:
Author: cocopow
Session Name: hg38_23676
Genome Assembly: hg38
Creation Date: 2019-06-20
Views: 822
1561017600 822
Description:
Author: cocopow
Session Name: hg19_superDuperTrack
Genome Assembly: hg19
Creation Date: 2019-04-16
Views: 829
1555401600 829
Description:
Author: cocopow
Session Name: hg19_DMR_chr2
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 850
1554105600 850
Description:
Author: cocopow
Session Name: hg19_DMR_1chr1_P180_P21_exm_3
Genome Assembly: hg19
Creation Date: 2019-03-21
Views: 866
1553155200 866
Description:
Author: cocopow
Session Name: hg19_ChIA
Genome Assembly: hg19
Creation Date: 2019-03-21
Views: 873
1553155200 873
Description:
Author: cocopow
Session Name: hg19_BedGraph
Genome Assembly: hg19
Creation Date: 2019-03-29
Views: 841
1553846400 841
Description:
Author: cocopow
Session Name: danRer7_bw_GSM1131536
Genome Assembly: danRer7
Creation Date: 2019-03-07
Views: 904
1551945600 904
Description:
Author: britnyblu
Session Name: rena_atac_data
Genome Assembly: mm10
Creation Date: 2019-08-15
Views: 793
1565856000 793
Description:
Author: megallegos
Session Name: Biol 310: Module 2 TSS-seq
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 2694
1536048000 2694
Description:
Author: mjulialamberti
Session Name: cxcl12
Genome Assembly: hg38
Creation Date: 2019-08-08
Views: 803
1565251200 803
Description:
Author: vperreau@unimelb.edu.au
Session Name: mm10 Linnarsson Celltype autoscale
Genome Assembly: mm10
Creation Date: 2019-02-18
Views: 268
1550476800 268
Description:
Author: masuping
Session Name: chr_lncRNA-seq_CPM
Genome Assembly: hg19
Creation Date: 2019-10-14
Views: 773
1571040000 773
Description:
Author: sajjeev
Session Name: foxa1_07222019
Genome Assembly: hg19
Creation Date: 2019-07-22
Views: 825
1563782400 825
Screenshot not available
Click Here to view
Description:
Author: sajjeev
Session Name: ICR_cmyc_07222019
Genome Assembly: hg19
Creation Date: 2019-07-22
Views: 835
1563782400 835
Screenshot not available
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Description:
Author: sajjeev
Session Name: 07222019
Genome Assembly: hg19
Creation Date: 2019-07-22
Views: 789
1563782400 789
Description:
Author: mauriege
Session Name: Fall21 Yeast test (GEM)
Genome Assembly: sacCer3
Creation Date: 2021-09-04
Views: 252
1630742400 252
Description:
Author: celiagonzalez98
Session Name: Class 1
Genome Assembly: hg38
Creation Date: 2020-02-10
Views: 728
1581321600 728
Description:
Author: batra.anjali
Session Name: Spring19 Yeast test AB
Genome Assembly: sacCer3
Creation Date: 2019-01-11
Views: 902
1547193600 902
Description:
Author: ruhollah
Session Name: hg19_1025_chr5_nmtf14
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 815
1554105600 815
Description:
Author: ruhollah
Session Name: hg19_830_chr6_nmtf15
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 823
1554105600 823
Description:
Author: ruhollah
Session Name: hg19_750_chr19_nmtf15
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 808
1554105600 808
Description:
Author: ruhollah
Session Name: hg19_199_chr8_nmtf16
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 842
1554105600 842
Description:
Author: ruhollah
Session Name: hg19_1405_chr16_nmtf16
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 847
1554105600 847
Description:
Author: ruhollah
Session Name: hg19_212_chr17_nmtf16
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 860
1554105600 860
Description:
Author: ruhollah
Session Name: hg19_131_chr2_nmtf17
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 845
1554105600 845
Description:
Author: ruhollah
Session Name: hg19_1163_chr1_nmtf18
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 864
1554105600 864
Description:
Author: ruhollah
Session Name: hg19_414_Chr8_nmtf19
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 859
1554105600 859
Description:
Author: ruhollah
Session Name: hg19_1617_chr1_nmtf20
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 840
1554105600 840
Description:
Author: ruhollah
Session Name: hg19_795_chr19_nmtf23
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 842
1554105600 842
Description: Tandemly repeated DNA sequences are widespread throughout the human genome and show sufficient variability among individuals in a population that they have become important in several fields including genetic mapping, linkage analysis, and human identity testing. These tandemly repeated regions of DNA are typically classified into several groups depending on the size of the repeat region. Minisatellites (variable number of tandem repeats, VNTRs) have core repeats with 9-80 bp, while microsatellites (short tandem repeats, STRs) contain 2-5 bp repeats. The forensic DNA community has moved primarily towards tetranucleotide repeats, which may be amplified using the polymerase chain reaction (PCR) with greater fidelity than dinucleotide repeats. The variety of alleles present in a population is such that a high degree of discrimination among individuals in the population may be obtained when multiple STR loci are examined.
Author: Hiram
Session Name: hg38.codis
Genome Assembly: hg38
Creation Date: 2018-05-10
Views: 745
1525939200 745
Description:
Author: Boody09
Session Name: Boudreau Lab_human cardiac Ago2 HITS-CLIP
Genome Assembly: hg19
Creation Date: 2018-05-08
Views: 1155
1525766400 1155
Description:
Author: ntinamu001
Session Name: NCOMMS-19-03087;HCT116_vs_DKO1
Genome Assembly: hg19
Creation Date: 2019-08-22
Views: 773
1566460800 773
Description:
Author: ntinamu001
Session Name: NCOMMS-19-03087;Mouse_OE
Genome Assembly: mm9
Creation Date: 2019-08-22
Views: 733
1566460800 733
Description:
Author: ntinamu001
Session Name: NCOMMS-19-03087;SH-SY5Y
Genome Assembly: hg19
Creation Date: 2019-08-22
Views: 759
1566460800 759
Description:
Author: AlicePsyche
Session Name: zebrafish_enhancers
Genome Assembly: danRer7
Creation Date: 2018-04-04
Views: 908
1522828800 908
Description:
Author: tschauer
Session Name: Harpprecht_NAR
Genome Assembly: dm6
Creation Date: 2019-03-27
Views: 876
1553673600 876
Description:
Author: Boonede
Session Name: Spring19 Yeast Test DB
Genome Assembly: sacCer3
Creation Date: 2019-01-11
Views: 875
1547193600 875
Description:
Author: frongemg
Session Name: Spring19 Yeast test MGF
Genome Assembly: sacCer3
Creation Date: 2019-01-11
Views: 885
1547193600 885
Description:
Author: ruhollah
Session Name: hg19_172Chr3_nmt8
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 911
1547452800 911
Description:
Author: ruckerhr
Session Name: Spring19 Yeast HR
Genome Assembly: sacCer3
Creation Date: 2019-01-09
Views: 898
1547020800 898
Description:
Author: ruckerhr
Session Name: TAS2R8group4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 888
1547452800 888
Description:
Author: Artem Babaian
Session Name: LIONS_ENCODE_supplement
Genome Assembly: hg19
Creation Date: 2019-01-09
Views: 931
1547020800 931
Description:
Author: gerbermm
Session Name: Spring19 Yeast test MG
Genome Assembly: sacCer3
Creation Date: 2019-01-08
Views: 982
1546934400 982
Description:
Author: descentj
Session Name: Spring19YeastTestTD
Genome Assembly: sacCer3
Creation Date: 2019-01-08
Views: 885
1546934400 885
Description:
Author: shashipujar
Session Name: Multiz_conservation_SP
Genome Assembly: hg38
Creation Date: 2018-06-18
Views: 856
1529308800 856
Description:
Author: agacita
Session Name: DYB_Promoter
Genome Assembly: hg19
Creation Date: 2019-01-22
Views: 1026
1548144000 1026
Description:
Author: lbenner
Session Name: fs(1)K741
Genome Assembly: dm6
Creation Date: 2017-09-11
Views: 1145
1505116800 1145
Description:
Author: mersedehr
Session Name: NSUN4_v1_rs72886903
Genome Assembly: hg19
Creation Date: 2018-06-14
Views: 953
1528963200 953
Description:
Author: shashaverygood@163.com
Session Name: DGRP2snp
Genome Assembly: dm3
Creation Date: 2018-06-14
Views: 932
1528963200 932
Description:
Author: Annaneed
Session Name: Anna_GEL
Genome Assembly: mm9
Creation Date: 2018-06-08
Views: 665
1528444800 665
Screenshot not available
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Description:
Author: view
Session Name: 11
Genome Assembly: hg38
Creation Date: 2018-12-21
Views: 931
1545379200 931
Description:
Author: GDJ_Duke
Session Name: Layden_liver_ATACseq
Genome Assembly: mm10
Creation Date: 2018-12-16
Views: 919
1544947200 919
Description:
Author: nedbrewer66
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2018-12-18
Views: 899
1545120000 899
Description:
Author: mfarkas03
Session Name: 1299To p53 mutants
Genome Assembly: hg19
Creation Date: 2018-06-07
Views: 610
1528358400 610
Description:
Author: arem
Session Name: hg19-cc
Genome Assembly: hg19
Creation Date: 2019-02-08
Views: 889
1549612800 889
Description:
Author: arem
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2019-02-08
Views: 969
1549612800 969
Description:
Author: Mikhailova_li
Session Name: KB-1471A8.1
Genome Assembly: hg19
Creation Date: 2018-06-04
Views: 981
1528099200 981
Description:
Author: Mikhailova_li
Session Name: session 3
Genome Assembly: hg19
Creation Date: 2018-06-03
Views: 990
1528012800 990
Description:
Author: Mikhailova_li
Session Name: session 1
Genome Assembly: hg19
Creation Date: 2018-06-03
Views: 998
1528012800 998
Description:
Author: brianlee
Session Name: hg38_chrM
Genome Assembly: hg38
Creation Date: 2018-06-01
Views: 1016
1527840000 1016
Description: Our LOVD Variants track has variants from many LSDBs; our OMIM Alleles, GWAS Catalog, ClinVar Variants and other tracks in the Phenotypes & Literature group may provide clues to when a SNP is Clinical (LSDB,OMIM,TPA,Diagnostic)" per the Flagged SNPs track based on whether dbSNP's true-or-false "clinically-assoc" flag is set from NCBI's documentation.
Author: brianlee
Session Name: hg19_variants
Genome Assembly: hg19
Creation Date: 2018-06-01
Views: 1015
1527840000 1015
Description:
Author: nehoralevi
Session Name: CTCF- macs2 control2
Genome Assembly: mm10
Creation Date: 2019-06-10
Views: 829
1560153600 829
Description: Epigenome map of human fetal and iPSC-derived retinal pigment epithelium (RPE)
Author: s041629
Session Name: iPSCORE_RPE_session_hg19
Genome Assembly: hg19
Creation Date: 2018-05-31
Views: 1025
1527753600 1025
Description: This session highlights data from the Brain Epigenome Hub, created by Peter Hickey, Lindsay Rizzardi, and Kaspar Hansen and others at Johns Hopkins University. The hub shows methylation, ATAC-seq, and RNAseq across different brain regions.
Author: chmalee
Session Name: hg19_brainEpigenome
Genome Assembly: hg19
Creation Date: 2018-05-30
Views: 2122
1527667200 2122
Description:
Author: rezo
Session Name: ReCappable-seq
Genome Assembly: hg38
Creation Date: 2019-08-11
Views: 1150
1565510400 1150
Description: 6 CLEAR-CLIP tracks from mouse keratinocytes in total. 3 showing CLEAR-CLIP reads from all miRNAs and 3 showing only miR-200 family specific reads. For each set of three there are Controls, miR-200 DKO and miR-200 inducible libraries.
Author: Bjerkega
Session Name: Bjerkega CLEAR-CLIP
Genome Assembly: mm10
Creation Date: 2019-10-04
Views: 825
1570176000 825
Description:
Author: ltoker
Session Name: Marzi
Genome Assembly: hg19
Creation Date: 2021-01-05
Views: 491
1609833600 491
Description:
Author: carlchancc
Session Name: 20191017_MC_Forelimb_Hindlimb_hg19
Genome Assembly: hg19
Creation Date: 2019-10-17
Views: 767
1571299200 767
Description:
Author: hkao
Session Name: RHOA 2-2
Genome Assembly: hg38
Creation Date: 2019-07-09
Views: 789
1562659200 789
Description:
Author: hkao
Session Name: NEFM 1-3
Genome Assembly: hg38
Creation Date: 2019-07-09
Views: 791
1562659200 791
Description:
Author: ejlopezsoto
Session Name: Cacna1b e35-e41
Genome Assembly: hg19
Creation Date: 2019-07-11
Views: 781
1562832000 781
Description: All patient isolates in PRJNA613958, with exception of MinION sequenced, were individually aligned against the NC_045512.2 reference with SNPs called for each isolate using 'ngskit4b kalign'. A matrix of all individual isolate SNP site loci (rows) and isolate base calls at that loci (cols) created with 'ngskit4b snpmarkers' and this matrix then processed with 'ngskit4b snps2pgsnps' to output the pgSNPs tracks. Tracks show, for each SNP loci, the number of isolates containing the displayed allele base. Tracks provided for age, sex and sample month.
Author: biodiscovery
Session Name: wuhCor1 PRJNA613958 allele components
Genome Assembly: wuhCor1
Creation Date: 2020-04-29
Views: 874
1588147200 874
Description:
Author: eldadshulman
Session Name: Homer_newaproch
Genome Assembly: mm10
Creation Date: 2019-06-30
Views: 776
1561881600 776
Description:
Author: ruhollah
Session Name: hg19_162Chr19_nmt4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 882
1547452800 882
Description:
Author: 704855238
Session Name: chip-seq_LiuZX_seh1
Genome Assembly: rn6
Creation Date: 2018-05-24
Views: 995
1527148800 995
Description:
Author: zhangr100
Session Name: AHBEC_VitD
Genome Assembly: hg19
Creation Date: 2019-04-04
Views: 909
1554364800 909
Description:
Author: liqing9102
Session Name: mm9
Genome Assembly: mm9
Creation Date: 2018-05-16
Views: 928
1526457600 928
Description:
Author: avlasova
Session Name: tADseq.short-library.all_frames
Genome Assembly: hub_271523_TFbb_list180_linear
Creation Date: 2018-05-14
Views: 1089
1526284800 1089
Description: Juniata Bioinformatics KH JL Lethal neonatal rigidity and multifocal seizure syndrome is characterized by underdeveloped brains and seizures that begin in-utero. Seizures continue after birth and result in death which occurs usually by the age of 4 months. The disease is caused by an insertion of an A in the BRAT1 gene. The normal BRAT1 gene function is to be a master controller of cell cycled checkpoint signaling pathways that are required for cellular responses to DNA damage.
Author: herrkx18
Session Name: Amish Lethal Neonatal rigidity and Seizure syndrome 2
Genome Assembly: hg19
Creation Date: 2020-02-27
Views: 703
1582790400 703
Description:
Author: Vaa2001
Session Name: hg19_ASXL1Gen
Genome Assembly: hg38
Creation Date: 2019-10-24
Views: 734
1571904000 734
Screenshot not available
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Description:
Author: eldadshulman
Session Name: endVsStart_chr1_heart
Genome Assembly: mm10
Creation Date: 2018-05-03
Views: 764
1525334400 764
Screenshot not available
Click Here to view
Description:
Author: eldadshulman
Session Name: apa_heart
Genome Assembly: mm10
Creation Date: 2018-05-03
Views: 776
1525334400 776
Description:
Author: ruhollah
Session Name: hg19_148Chr2_nmt3
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 846
1547452800 846
Description:
Author: che7oz
Session Name: hg19-IRF8-DCCC
Genome Assembly: hg19
Creation Date: 2018-10-03
Views: 938
1538553600 938
Description:
Author: estercastillo
Session Name: Reprogenetics_PGD
Genome Assembly: hg19
Creation Date: 2018-04-27
Views: 1035
1524816000 1035
Description:
Author: lob5149
Session Name: TSC2
Genome Assembly: hg19
Creation Date: 2018-04-26
Views: 1019
1524729600 1019
Description:
Author: lob5149
Session Name: AKT1
Genome Assembly: hg19
Creation Date: 2018-04-26
Views: 991
1524729600 991
Description:
Author: lob5149
Session Name: MTOR
Genome Assembly: hg19
Creation Date: 2018-04-26
Views: 986
1524729600 986
Description:
Author: estercastillo
Session Name: JuanMartinez_LifeSeq_AS
Genome Assembly: hg19
Creation Date: 2018-04-22
Views: 1048
1524384000 1048
Description:
Author: prutten
Session Name: rs6702619_3C-Seq_2replicates
Genome Assembly: hg19
Creation Date: 2015-03-17
Views: 953
1426579200 953
Description:
Author: estercastillo
Session Name: Lara_AS_LaPaz
Genome Assembly: hg19
Creation Date: 2018-04-19
Views: 976
1524124800 976
Description:
Author: roseaux12
Session Name: jinliying_nk
Genome Assembly: hg19
Creation Date: 2018-08-22
Views: 913
1534924800 913
Description:
Author: celiagonzalez98
Session Name: class 3 part 1
Genome Assembly: hg19
Creation Date: 2020-02-12
Views: 703
1581494400 703
Description:
Author: arthurcheng
Session Name: hg38 ATAC-seq
Genome Assembly: hg38
Creation Date: 2019-01-23
Views: 336
1548230400 336
Description:
Author: riguang zhao
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2019-03-12
Views: 825
1552377600 825
Description:
Author: Xavier Rambout
Session Name: mm9 2019-03-11
Genome Assembly: mm9
Creation Date: 2019-03-11
Views: 700
1552291200 700
Description:
Author: ruhollah
Session Name: hg19_128Chr19+167Chr19_nmt11+11
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 855
1547452800 855
Description:
Author: Camila
Session Name: Enhancers-BreastCancersCells
Genome Assembly: hg19
Creation Date: 2018-04-21
Views: 1010
1524297600 1010
Description:
Author: micca
Session Name: mm9_Buecker2014
Genome Assembly: mm9
Creation Date: 2018-04-03
Views: 1004
1522742400 1004
Description:
Author: Jcotney
Session Name: Mouse_chromhmm_15_18_state
Genome Assembly: mm10
Creation Date: 2018-10-20
Views: 102
1540022400 102
Description:
Author: arem
Session Name: colon meth
Genome Assembly: hg19
Creation Date: 2019-03-06
Views: 798
1551859200 798
Description:
Author: jtm
Session Name: shiny_app_hg38_v0
Genome Assembly: hg38
Creation Date: 2018-03-28
Views: 3552
1522224000 3552
Description:
Author: Hanson258
Session Name: DNA Damage ChIP-seq
Genome Assembly: hg38
Creation Date: 2018-07-17
Views: 1038
1531814400 1038
Description:
Author: ldistefano
Session Name: dm6_DiStefanoData
Genome Assembly: dm6
Creation Date: 2019-03-12
Views: 753
1552377600 753
Screenshot not available
Click Here to view
Description:
Author: jtm
Session Name: shiny_app_mm10_v0
Genome Assembly: mm10
Creation Date: 2018-04-04
Views: 1457
1522828800 1457
Description:
Author: cocopow
Session Name: hg38_nucs
Genome Assembly: hg38
Creation Date: 2019-04-23
Views: 809
1556006400 809
Description: The genes HBB and HBD are both expressed in red blood cells, but HBB is also expressed in many other tissues, whereas HBD is expressed in red cells almost exclusively.
Author: videoDemo1
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2018-03-13
Views: 1096
1520928000 1096
Description:
Author: nehoralevi
Session Name: mm10-CTCF
Genome Assembly: mm10
Creation Date: 2019-06-03
Views: 846
1559548800 846
Description: The GeneHancer database links human regulatory elements (enhancers and promoters) as arcs to their inferred target genes. Over 1 million regulatory elements obtained from seven genome-wide databases by GeneHancer are visualizable on the human hg19 and hg38 assemblies as color-coded curves ending on their respective targets. Read more about GeneHancer data on the track description page and this article <a href="https://www.ncbi.nlm.nih.gov/pubmed/28605766">GeneHancer: genome-wide integration of enhancers and target genes in GeneCards.</a>
Author: PublicSessions
Session Name: GeneHancer
Genome Assembly: hg38
Creation Date: 2019-05-31
Views: 1008
1559289600 1008
Description:
Author: rafal.czapiewski@ed.ac.uk
Session Name: extended BACs and FOSMIDs
Genome Assembly: mm10
Creation Date: 2019-03-27
Views: 849
1553673600 849
Description:
Author: AnaïsTest
Session Name: test
Genome Assembly: hg38
Creation Date: 2019-06-06
Views: 810
1559808000 810
Description:
Author: brianlee
Session Name: test
Genome Assembly: hg38
Creation Date: 2019-06-06
Views: 823
1559808000 823
Description:
Author: emmawentworth
Session Name: hg19-PWS
Genome Assembly: hg19
Creation Date: 2019-06-05
Views: 784
1559721600 784
Description:
Author: cocopow
Session Name: mm10_altStrains
Genome Assembly: mm10
Creation Date: 2019-06-05
Views: 806
1559721600 806
Description:
Author: evan_pepper
Session Name: extra_tRNAs_Analysis
Genome Assembly: hg19
Creation Date: 2018-03-08
Views: 1054
1520496000 1054
Description:
Author: hchen17
Session Name: 20180307_1300_RESULTS_6pelvicFinStickleOut
Genome Assembly: hub_207981_oryLat03
Creation Date: 2018-03-07
Views: 534
1520409600 534
Description:
Author: lboteva
Session Name: mm10_rif1_HP_
Genome Assembly: mm10
Creation Date: 2019-05-30
Views: 804
1559203200 804
Description:
Author: lbennett
Session Name: impdh1retina
Genome Assembly: hg19
Creation Date: 2018-03-06
Views: 1057
1520323200 1057
Description:
Author: ruhollah
Session Name: 12_ruh
Genome Assembly: hg38
Creation Date: 2018-11-13
Views: 900
1542096000 900
Description:
Author: ruhollah
Session Name: hg19_2_chr8
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 907
1543219200 907
Description:
Author: yezheng
Session Name: HiC_ChIP-seq_short
Genome Assembly: hg19
Creation Date: 2018-03-04
Views: 1109
1520150400 1109
Description:
Author: holdenl
Session Name: danRer11 zebrafish CNV across strains
Genome Assembly: danRer11
Creation Date: 2018-03-03
Views: 1082
1520064000 1082
Description:
Author: estercastillo
Session Name: MartaRodriguez_Reus
Genome Assembly: hg19
Creation Date: 2018-02-28
Views: 1027
1519804800 1027
Description:
Author: BenjaminMartin02
Session Name: Stefanska_data
Genome Assembly: hg19
Creation Date: 2018-02-14
Views: 1276
1518595200 1276
Description:
Author: labrozam
Session Name: CGEMS Yeast AL
Genome Assembly: sacCer3
Creation Date: 2016-11-05
Views: 1156
1478332800 1156
Description:
Author: labrozam
Session Name: CGEMS Worm AL test
Genome Assembly: ce11
Creation Date: 2016-11-20
Views: 1167
1479628800 1167
Description:
Author: labrozam
Session Name: CGEMS Mouse AL test
Genome Assembly: mm9
Creation Date: 2016-11-29
Views: 1126
1480406400 1126
Description:
Author: labrozam
Session Name: CGEMS Human AL test
Genome Assembly: hg38
Creation Date: 2016-11-21
Views: 1162
1479715200 1162
Description:
Author: labrozam
Session Name: Anna-rs72802342
Genome Assembly: hg19
Creation Date: 2017-10-31
Views: 1050
1509436800 1050
Description:
Author: jwjiao
Session Name: H2ZKO_E16_WT_E16
Genome Assembly: hg38
Creation Date: 2018-02-26
Views: 1109
1519632000 1109
Description:
Author: troy.dumenil@qimr.edu.au
Session Name: MMR_branchpoints-230218
Genome Assembly: hg19
Creation Date: 2018-02-22
Views: 1025
1519286400 1025
Description:
Author: yierjin_2008
Session Name: KMS12BM
Genome Assembly: hg19
Creation Date: 2018-02-22
Views: 1051
1519286400 1051
Description: This session is an example of using the Short Match track to search a sequence in the current view with the IUPAC codes. The input of WACMKGTW catches two matches. The session also using a feature of the Base Position track. You can highlight specific nucleotides with that track and AAC are selected to be highlighted (note, there is also a step taken to check the box to show reverse complements of motifs). This region you will see AACATGTT and another reverse strand AACCTGTA, which appears to work with the IUPAC codes: http://genome.ucsc.edu/goldenPath/help/iupac.html The Base Track and the Short Match track allow you to investigate the sequence in the current view when zoomed in with these highlight and search features.
Author: brianlee
Session Name: hg38.WACMKGTW
Genome Assembly: hg38
Creation Date: 2018-02-21
Views: 49
1519200000 49
Description:
Author: simonwang612
Session Name: worm-chip-L4
Genome Assembly: ce10
Creation Date: 2018-02-20
Views: 1049
1519113600 1049
Description:
Author: simonwang612
Session Name: worm-chip
Genome Assembly: ce10
Creation Date: 2018-02-19
Views: 1014
1519027200 1014
Description:
Author: estercastillo
Session Name: JudithArmstrong_predisposicio
Genome Assembly: hg19
Creation Date: 2018-02-18
Views: 1022
1518940800 1022
Description:
Author: Mannu Walia
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2018-12-13
Views: 903
1544688000 903
Description:
Author: AnUnroyalKing
Session Name: Gene_File_King
Genome Assembly: hg19
Creation Date: 2018-02-15
Views: 1032
1518681600 1032
Description:
Author: cmhct7
Session Name: Mouse Quad Data
Genome Assembly: mm10
Creation Date: 2016-09-12
Views: 1278
1473667200 1278
Description:
Author: clauhag
Session Name: ContactSites_mixedpopulations
Genome Assembly: hg19
Creation Date: 2016-12-18
Views: 1333
1482048000 1333
Description:
Author: clauhag
Session Name: ContactSites_clones
Genome Assembly: hg19
Creation Date: 2016-12-18
Views: 1301
1482048000 1301
Description:
Author: ascendgene
Session Name: 60genes panel chr11
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 990
1532505600 990
Description:
Author: zunpengliu66
Session Name: WT and DGCR8_dex2 H3K9me3 ChIP-seq
Genome Assembly: hg19
Creation Date: 2018-04-11
Views: 1004
1523433600 1004
Description:
Author: samross
Session Name: danRer7_48hpf_6dpfbrain_RRBS
Genome Assembly: danRer7
Creation Date: 2018-02-14
Views: 1023
1518595200 1023
Description:
Author: Lorena8a
Session Name: trabajo genomics HSC
Genome Assembly: hg19
Creation Date: 2018-02-14
Views: 1092
1518595200 1092
Description:
Author: oac7
Session Name: oac7_hg19_all_snvs
Genome Assembly: hg19
Creation Date: 2018-02-13
Views: 1045
1518508800 1045
Description:
Author: AnUnroyalKing
Session Name: Ian_King_Settings
Genome Assembly: hg19
Creation Date: 2018-02-13
Views: 1014
1518508800 1014
Description:
Author: marzoldr
Session Name: hg38 MAPT density graphs and such
Genome Assembly: hg38
Creation Date: 2018-02-13
Views: 1031
1518508800 1031
Description:
Author: marzoldr
Session Name: hg38 MAPT alleles
Genome Assembly: hg38
Creation Date: 2018-02-13
Views: 1035
1518508800 1035
Description:
Author: marzoldr
Session Name: hg19 RHO custom 1
Genome Assembly: hg19
Creation Date: 2018-02-13
Views: 1033
1518508800 1033
Description: This assembly hub for the CG2 clonal zebrafish is part of a much larger collection of assembly hubs. The hub details can be found on the gateway page for this hub <a href="http://genome.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/gbdb/hubs/genbank/vertebrate_other/hub.ncbi.txt&genome=GCA_001483285.1_CG2v1.0&position=lastDbPos" >found here.</a> The hub is Biosample: SAMN03964926 and has Assembly accession ID: GCA_001483285.1. <br> <br> The hub is is part of this much larger assembly hub collection, with a launching page <a href="http://genome-test.cse.ucsc.edu/~hiram/hubs/genbank/vertebrate_mammalian/vertebrate_mammalian.ncbi.html" >found here</a> (note these will launch on our test development site as this hub is considered a prototype and hasn't passed quality control). Once connected to the above hub you have access to all of these hubs, the launching page only makes it more easy to directly link to the Track Browsing page. When connected one can also go to the Gateway page (earlier link) and see a <b>Download files for this assembly hub:</b> section with a <code>wget</code> command to access all the files for these assembly hubs.
Author: brianlee
Session Name: CG2zebrafish
Genome Assembly: hub_89563_GCA_001483285.1_CG2v1.0
Creation Date: 2018-07-06
Views: 986
1530864000 986
Description:
Author: AnUnroyalKing
Session Name: King_setting
Genome Assembly: hg19
Creation Date: 2018-02-15
Views: 1048
1518681600 1048
Description:
Author: estercastillo
Session Name: pseudogens
Genome Assembly: hg19
Creation Date: 2018-01-31
Views: 1046
1517385600 1046
Description:
Author: marylaws
Session Name: foxm1 chip comparison
Genome Assembly: hg19
Creation Date: 2018-02-07
Views: 1012
1517990400 1012
Description:
Author: marylaws
Session Name: FOXM 231 and mcf7
Genome Assembly: hg18
Creation Date: 2018-02-07
Views: 1025
1517990400 1025
Description: This session illustrates the meaning of columns in the axt file definition here, http://genome.ucsc.edu/goldenPath/help/axt.html You can see that indeed if you subtract to find the differences in the primary organism coordinates (panTro4: 78679-77637 = 1,042) it will be different than the values in the aligning organism coordinates (hg19: 88869-87772 = 1,097), but in the primary assembly sequence line you can see where there isn't a match in more than one place (most notable gct---------------------------------------------------ctt) as seen in this alignment of hg19 to panTro4. See the mailing list question here: <a href="https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/-ohoSCyPIT0/c5nP7NzOBQAJ">link</a>.
Author: brianlee
Session Name: hg19.panTro4
Genome Assembly: hg19
Creation Date: 2018-02-02
Views: 1012
1517558400 1012
Description:
Author: marzoldr
Session Name: TAS2R38 (T1)
Genome Assembly: hg19
Creation Date: 2018-01-23
Views: 1020
1516694400 1020
Description:
Author: nobelbhasin
Session Name: Foxp2session
Genome Assembly: mm9
Creation Date: 2018-01-29
Views: 1009
1517212800 1009
Description:
Author: yezheng
Session Name: ATAC-seq_ALA_mm9
Genome Assembly: mm9
Creation Date: 2018-01-25
Views: 1072
1516867200 1072
Description:
Author: Colin Logie
Session Name: forsubmission2bioRxiv_new
Genome Assembly: hg19
Creation Date: 2018-01-22
Views: 1146
1516608000 1146
Description:
Author: ascendgene
Session Name: hg19_chr16:21960001-22400001
Genome Assembly: hg19
Creation Date: 2018-01-21
Views: 931
1516521600 931
Description:
Author: chouhj
Session Name: noCHX_2017
Genome Assembly: sacCer3
Creation Date: 2017-08-14
Views: 1086
1502697600 1086
Description:
Author: chouhj
Session Name: 46Del_2016batch
Genome Assembly: sacCer3
Creation Date: 2017-01-05
Views: 1086
1483603200 1086
Description:
Author: chouhj
Session Name: 11Del_2015batch
Genome Assembly: sacCer3
Creation Date: 2017-01-05
Views: 1066
1483603200 1066
Description:
Author: chmalee
Session Name: hg38notableChrYFeatures
Genome Assembly: hg38
Creation Date: 2017-03-06
Views: 1238
1488787200 1238
Description:
Author: ascendgene
Session Name: hg19_chr15:32,020,001-32,420,001
Genome Assembly: hg19
Creation Date: 2018-01-21
Views: 952
1516521600 952
Description:
Author: FrankaRang
Session Name: FR180123_mm10_groupmeeting
Genome Assembly: mm10
Creation Date: 2018-01-23
Views: 1032
1516694400 1032
Description:
Author: zheyangshan
Session Name: EGFR BOTH
Genome Assembly: hg19
Creation Date: 2018-12-14
Views: 819
1544774400 819
Description:
Author: rnaguru
Session Name: mm9-pY-MEME
Genome Assembly: mm9
Creation Date: 2018-01-18
Views: 1009
1516262400 1009
Description: This assembly hub has a sequence that translates into a fun message when looking at codon translations.
Author: brianlee
Session Name: PAG_FUN
Genome Assembly: hub_211929_yourGenome
Creation Date: 2018-01-16
Views: 1108
1516089600 1108
Description:
Author: tommi.andreani
Session Name: Neil.Methylome.Coverage10.WT.Clone5.DKO.clone7
Genome Assembly: mm10
Creation Date: 2018-01-12
Views: 1049
1515744000 1049
Description:
Author: marzoldr
Session Name: Spring18 Yeast Test DMLJ
Genome Assembly: sacCer3
Creation Date: 2018-01-09
Views: 1013
1515484800 1013
Description: This session shows TRPV3 which researchers believe is involved in our ability to sense and detect warm temperature. Scripps Research Institute scientists have demonstrated that mice lacking the TRPV3 protein have specific deficiencies in their ability to detect temperatures.
Author: brianlee
Session Name: skin_heat_sense
Genome Assembly: hg19
Creation Date: 2022-01-03
Views: 38
1641196800 38
Description:
Author: megas
Session Name: hg19 Chip-Seq Encode vs mm10
Genome Assembly: hg19
Creation Date: 2018-01-02
Views: 1136
1514880000 1136
Description: test the details .
Author: greece2019
Session Name: hg19_b0b1
Genome Assembly: hg19
Creation Date: 2019-03-03
Views: 859
1551600000 859
Description:
Author: jkrakowiak
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-12-18
Views: 1467
1513584000 1467
Description:
Author: jwjiao
Session Name: rbm3
Genome Assembly: mm10
Creation Date: 2017-12-17
Views: 1050
1513497600 1050
Description: CircRNA and parental gene annotation as identified in the publication "Evolutionarily young transposable elements drive circular RNA repertoires" by Gruhl et al. (in preparation). The browser view include an additional track with the repeat dimers surrounding the respective circRNA.
Author: Frenzchen
Session Name: rheMac2 circRNA annotation
Genome Assembly: rheMac2
Creation Date: 2016-09-25
Views: 543
1474790400 543
Description:
Author: Worje
Session Name: PRC2 iCLIP G4
Genome Assembly: mm9
Creation Date: 2017-12-15
Views: 909
1513324800 909
Description:
Author: mazawm
Session Name: hg#19RHO
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 872
1542096000 872
Description:
Author: Heywhoyou22
Session Name: Nrl and wt Cbr sites
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 905
1542096000 905
Description:
Author: nedbrewer66
Session Name: NAT7
Genome Assembly: hg38
Creation Date: 2018-12-28
Views: 877
1545984000 877
Description:
Author: caojun
Session Name: Amr-20161031
Genome Assembly: mm9
Creation Date: 2016-10-31
Views: 1239
1477900800 1239
Description:
Author: butlertj3
Session Name: nuc_g4
Genome Assembly: hg38
Creation Date: 2018-06-05
Views: 1023
1528185600 1023
Description:
Author: butlertj3
Session Name: mtDNA_G4_homo_hetero
Genome Assembly: hg38
Creation Date: 2018-04-10
Views: 1065
1523347200 1065
Description:
Author: brianlee
Session Name: sacCer3_spots
Genome Assembly: sacCer3
Creation Date: 2017-10-31
Views: 1046
1509436800 1046
Description:
Author: brianlee
Session Name: hg38_interact_example
Genome Assembly: hg38
Creation Date: 2018-11-05
Views: 915
1541404800 915
Description:
Author: brianlee
Session Name: hg38_GTEX_SUN
Genome Assembly: hg38
Creation Date: 2018-04-13
Views: 1098
1523606400 1098
Description:
Author: brianlee
Session Name: hg38.exampleTracks
Genome Assembly: hg38
Creation Date: 2017-06-20
Views: 1059
1497945600 1059
Description:
Author: brianlee
Session Name: hg38.SIRT1.relatedExpression
Genome Assembly: hg38
Creation Date: 2017-05-23
Views: 1277
1495526400 1277
Description:
Author: brianlee
Session Name: hg19.pgSnpExample
Genome Assembly: hg19
Creation Date: 2017-07-19
Views: 1065
1500451200 1065
Description:
Author: brianlee
Session Name: hg19.longTabix
Genome Assembly: hg19
Creation Date: 2017-05-24
Views: 1114
1495612800 1114
Description:
Author: bisrat
Session Name: mm9
Genome Assembly: mm9
Creation Date: 2017-12-14
Views: 1047
1513238400 1047
Description:
Author: bisrat
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2018-09-18
Views: 1018
1537257600 1018
Description:
Author: benbeijs
Session Name: MYBPC1 (JSB) CM Data
Genome Assembly: hg19
Creation Date: 2018-09-04
Views: 941
1536048000 941
Description:
Author: benbeijs
Session Name: ENCODE Exercise, 3
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 906
1542096000 906
Description:
Author: benbeijs
Session Name: ENCODE Exercise, 2
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 905
1542096000 905
Description:
Author: benbeijs
Session Name: ENCODE Exercise
Genome Assembly: hg19
Creation Date: 2018-11-13
Views: 875
1542096000 875
Description:
Author: benbeijs
Session Name: DSP (JSB) CM Data
Genome Assembly: hg19
Creation Date: 2018-09-05
Views: 958
1536134400 958
Description:
Author: benbeijs
Session Name: AMD SNP (JSB), Exercise 3
Genome Assembly: hg19
Creation Date: 2018-10-02
Views: 954
1538467200 954
Description:
Author: tommi.andreani
Session Name: Neil.Methylome.Coverage.Higher.10
Genome Assembly: mm10
Creation Date: 2017-12-12
Views: 1093
1513065600 1093
Description:
Author: nicklewis
Session Name: AMD SNP Second Try
Genome Assembly: hg19
Creation Date: 2017-11-02
Views: 1008
1509609600 1008
Description:
Author: nicklewis
Session Name: AMD SNP Custom Tracks
Genome Assembly: hg38
Creation Date: 2017-10-31
Views: 1036
1509436800 1036
Description:
Author: toniai
Session Name: dm3_Mateo_annotations
Genome Assembly: dm3
Creation Date: 2018-12-12
Views: 985
1544601600 985
Description:
Author: cocapo
Session Name: hg38_multiWig_noOverlay
Genome Assembly: hg38
Creation Date: 2018-12-13
Views: 896
1544688000 896
Description:
Author: roseaux12
Session Name: 3_subset_nk
Genome Assembly: hg19
Creation Date: 2018-12-13
Views: 889
1544688000 889
Description:
Author: abner_lim
Session Name: OVcar
Genome Assembly: hg19
Creation Date: 2018-12-09
Views: 897
1544342400 897
Description:
Author: GenePeeks
Session Name: .2017.12 60bp Multi-Seq-Alg
Genome Assembly: hg19
Creation Date: 2017-12-10
Views: 984
1512892800 984
Description:
Author: rnkeith
Session Name: dm6_first_ribo-seq
Genome Assembly: dm6
Creation Date: 2019-05-02
Views: 703
1556784000 703
Description:
Author: cath
Session Name: v440hgw0Test
Genome Assembly: hg38
Creation Date: 2016-10-25
Views: 1114
1477382400 1114
Description:
Author: cath
Session Name: MLQ19469
Genome Assembly: hg19
Creation Date: 2017-05-24
Views: 1257
1495612800 1257
Description:
Author: cocopow
Session Name: hg18_44way
Genome Assembly: hg18
Creation Date: 2019-07-24
Views: 772
1563955200 772
Description:
Author: kinerettaler
Session Name: danRer11
Genome Assembly: danRer11
Creation Date: 2018-12-30
Views: 883
1546156800 883
Description: The GeneHancer track relates enhancer and promoters to their interactions with nearby genes. The interactions track in the pack setting allows for a pack view of the data with the direction and name of individual endpoints clearly displayed. A highlighted GH01J209814 enhancer is associated with the gene IRF6 (Interferon Regulatory Factor 6) located about 10kb upstream from the gene and harbors regulatory non-coding variants strongly associated to Van Der Woude Syndrome 1 (VWS1), a disease involving cleft lip and cleft palate.
Author: view
Session Name: GeneHancerPack
Genome Assembly: hg19
Creation Date: 2019-03-29
Views: 748
1553846400 748
Description: The JASPAR 2018 TFB Public Hub represents genome-wide predicted binding sites for TF (transcription factor) binding profiles in the JASPAR CORE vertebrates collection. Please click into the Track Description pages to see more details and credits and contacts for the hub's data.
Author: brianlee
Session Name: hg38.JASPARhub
Genome Assembly: hg38
Creation Date: 2017-09-29
Views: 1506
1506672000 1506
Description: With this session loaded navigate to the Variant Annotation Integrator (VAI) tool (under the top blue bar Tools menu). Then scroll down and click the "Get results" button to experience how the VAI tool can now output HGVS terms. This session is loaded with an artificial input of variants on the human hg38 assembly with NCBI RefSeq Genes track (curated NM_*, NR_*, and YP_* subset) filtered for coding exons and splice site roles and on DNase regulatory elements with output in HTML Variant Effect Predictor format where the "Extra" column will include HGVS notation. Please note that a semi-colon ";" will separate results in that field (HGVSG=NC_000010.11:g.27005592_27005594delAGA; HGVSCN=NM_014915.2:c.5129_5131delTCT; EXON=34/34).
Author: brianlee
Session Name: hg38.exampleVAI
Genome Assembly: hg38
Creation Date: 2017-09-25
Views: 2077
1506326400 2077
Description:
Author: rasou2ba
Session Name: Bio 630 CRX variants Rasoul
Genome Assembly: hg38
Creation Date: 2017-09-27
Views: 1022
1506499200 1022
Description:
Author: lianeslaughter
Session Name: mm9-Locus3_primerDesign
Genome Assembly: mm9
Creation Date: 2017-09-26
Views: 1059
1506412800 1059
Description:
Author: Cong Guo
Session Name: IDEAS Blank
Genome Assembly: hg19
Creation Date: 2017-09-26
Views: 839
1506412800 839
Description:
Author: Lou
Session Name: pisOchAsseblyHub
Genome Assembly: hub_1100339_12Jun2017_28pcJ
Creation Date: 2019-04-22
Views: 1077
1555920000 1077
Description:
Author: peytonse
Session Name: Bio 630 CRX variants Peyton
Genome Assembly: hg38
Creation Date: 2017-09-20
Views: 1053
1505894400 1053
Description:
Author: nickcochran
Session Name: BE2C_MAPT_9-18-17
Genome Assembly: hg19
Creation Date: 2017-09-18
Views: 1096
1505721600 1096
Description:
Author: morotz
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-09-14
Views: 1067
1505376000 1067
Description:
Author: EvansLab
Session Name: EY_ATAC_Ileum
Genome Assembly: mm9
Creation Date: 2017-09-12
Views: 1049
1505203200 1049
Description:
Author: mcgaughey
Session Name: mm10_retina_epigenetics
Genome Assembly: mm10
Creation Date: 2017-08-11
Views: 1147
1502438400 1147
Description:
Author: yezheng
Session Name: HiC_ChIP-seq
Genome Assembly: hg19
Creation Date: 2018-03-02
Views: 1014
1519977600 1014
Description:
Author: leggeteg
Session Name: Leggett, BIO480Uba1 example
Genome Assembly: hg19
Creation Date: 2017-09-06
Views: 1069
1504684800 1069
Description:
Author: ofery1984
Session Name: FINAL Meth + RNA
Genome Assembly: mm10
Creation Date: 2017-09-06
Views: 587
1504684800 587
Description:
Author: mccarthyti
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2017-08-30
Views: 1075
1504080000 1075
Description:
Author: jcarlevaro
Session Name: TE_paper_hg38
Genome Assembly: hg38
Creation Date: 2017-08-28
Views: 988
1503907200 988
Description: We are pleased to add the UniBind Hub to our list of publicly available track hubs. UniBind is a comprehensive map of direct transcription factor - DNA interactions in the human genome. UniBind expands on the previous data and is now available on GRCh38/hg38. Below is a session highlighting UniBind transcription factor-DNA binding interactions in the SPR gene. http://genome.ucsc.edu/s/dschmelt/UniBindSRF More info on UniBind: https://unibind.uio.no We would like to thank the Mathelier Lab at the University of Oslo for creating this hub!
Author: dschmelt
Session Name: UniBindSRF
Genome Assembly: hg38
Creation Date: 2019-04-17
Views: 1498
1555488000 1498
Description:
Author: oac7
Session Name: oac7_Problem_Set_2
Genome Assembly: hg19
Creation Date: 2018-03-01
Views: 1010
1519891200 1010
Description:
Author: aniclem
Session Name: Clem, BIO480 Uba 1 example
Genome Assembly: hg19
Creation Date: 2017-09-03
Views: 1070
1504425600 1070
Description:
Author: EvansLab
Session Name: Eiji-ATACseq2
Genome Assembly: hg19
Creation Date: 2017-07-10
Views: 1205
1499673600 1205
Description:
Author: EvansLab
Session Name: EY_ATAC_Intes_Organoids
Genome Assembly: mm9
Creation Date: 2017-07-26
Views: 1133
1501056000 1133
Description:
Author: svadlamudi
Session Name: KSR2_7-24-17
Genome Assembly: hg19
Creation Date: 2017-07-24
Views: 1180
1500883200 1180
Description:
Author: jwjiao
Session Name: H2AZ-ChIP-E13-Cortex
Genome Assembly: mm10
Creation Date: 2017-07-13
Views: 1176
1499932800 1176
Description: This session is a response to question for research on Myc binding sites on the IDH1 gene promoter, with a desire to analyze the conservation of Myc binding sites between human and mouse. In the session Transcription Factor ChIP-seq (161 factors) from ENCODE track is displayed and three MYC binding spots represented. This clustered transcription factor binding track can be sorted to display only certain factors like MYC. Below the MYC binding spots (wgEncodeRegTfbsClusteredV3 track) the conservation data from 100 assembly alignments are displayed (cons100way track), with the specific data from mouse selected. Further below that the Chain/Net data (placentalChainNet track) specific for mouse are also displayed. To see this question on our Mailing List click this link: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/94u1jx2bk6c/py3OD90WAQAJ
Author: brianlee
Session Name: hg19.mycBinding2
Genome Assembly: hg19
Creation Date: 2017-07-13
Views: 1119
1499932800 1119
Description:
Author: cocopow
Session Name: rn6_23676
Genome Assembly: rn6
Creation Date: 2019-06-20
Views: 797
1561017600 797
Description:
Author: cocopow
Session Name: hg19_hubs
Genome Assembly: hg19
Creation Date: 2019-06-18
Views: 782
1560844800 782
Description:
Author: Adhil
Session Name: sacCer3_supercoiling
Genome Assembly: sacCer3
Creation Date: 2019-06-17
Views: 800
1560758400 800
Description:
Author: Joey Riepsaame
Session Name: mm9 DNAseI digital Me1 Me3 Ac27 Pol2
Genome Assembly: mm9
Creation Date: 2015-07-14
Views: 538
1436860800 538
Description:
Author: janzop
Session Name: hsa_all_cccDNA_HBx_mRNA
Genome Assembly: hg38
Creation Date: 2017-06-20
Views: 1013
1497945600 1013
Description:
Author: phageghost
Session Name: glasslab_microglia_hg38
Genome Assembly: hg38
Creation Date: 2017-06-19
Views: 1187
1497859200 1187
Description:
Author: phageghost
Session Name: glasslab_microglia_mm10
Genome Assembly: mm10
Creation Date: 2017-06-19
Views: 1100
1497859200 1100
Description: This sessionView is a collection of tracks centered around gene expression. The display is organized with gene annotations first, followed by mRNA and smRNA evidence. Following these data are <a href="https://www.nature.com/articles/ng.2653" target="_blank">GTEx tracks</a> which display median gene expression and transcripts from 51 tissues and 2 cells lines. The final tracks in this collection provide additional expression support: TSS/Dnase/chromatin state. The region visualized is a ~10,200bp window covering two <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1891803/" target="_blank">HOX genes</a> which are regulators for embryonic development and continue to be expressed throughout postnatal life.
Author: view
Session Name: Expression
Genome Assembly: hg19
Creation Date: 2018-10-08
Views: 979
1538985600 979
Description:
Author: nickcochran
Session Name: BE2C-Candidates-6-9-17
Genome Assembly: hg19
Creation Date: 2017-06-09
Views: 1073
1496995200 1073
Description:
Author: ezra abramms
Session Name: nebulin bam site two
Genome Assembly: mm10
Creation Date: 2017-06-05
Views: 1075
1496649600 1075
Description:
Author: wenzelmk
Session Name: BIO 481 hg38 CHR2 Chimp, Mouse, Chicken, Zebrafish
Genome Assembly: hg38
Creation Date: 2017-10-10
Views: 1052
1507622400 1052
Description:
Author: peijinlim
Session Name: mm9 Nrf2 ChIPseq Mrp2
Genome Assembly: mm9
Creation Date: 2017-06-01
Views: 1175
1496304000 1175
Description:
Author: yang1221720
Session Name: KDM3A_splicing
Genome Assembly: hg38
Creation Date: 2018-11-22
Views: 879
1542873600 879
Description:
Author: ifollon
Session Name: hg19_sangre2
Genome Assembly: hg19
Creation Date: 2017-05-30
Views: 1175
1496131200 1175
Description:
Author: jwrows2014
Session Name: EPAS1 search 5272017
Genome Assembly: hg38
Creation Date: 2017-05-27
Views: 1099
1495872000 1099
Description: This session uses a new format called type=longTabix, here is a mailing list describing this type: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ This new type uses a custom track that points to a .gz file, and where that is located there is also a .gz.tbi file that provides the index. The tab-separated .gz file has contents like the following: chr19 44116910 44119168 chr21:47876840-47878656,2 31515 . The .tbi file is built using the tabix software from: http://samtools.sourceforge.net/tabix.shtml
Author: brianlee
Session Name: hg19.other_regions
Genome Assembly: hg19
Creation Date: 2017-05-25
Views: 1131
1495699200 1131
Description:
Author: Fadak Alali
Session Name: Fall19 Yeast test FA
Genome Assembly: sacCer3
Creation Date: 2019-08-31
Views: 738
1567238400 738
Description:
Author: ephong0305
Session Name: GeM MOA HD GWAS.v9
Genome Assembly: hg19
Creation Date: 2019-10-04
Views: 505
1570176000 505
Description:
Author: Bowen
Session Name: hg38_HBB_rs334
Genome Assembly: hg38
Creation Date: 2019-10-24
Views: 763
1571904000 763
Description:
Author: anneabraham1
Session Name: MAPT mutant alleles Anne Abraham
Genome Assembly: hg38
Creation Date: 2018-02-12
Views: 1044
1518422400 1044
Description:
Author: XiangChen
Session Name: Bio481 Chen AMD SNPs rs67538026
Genome Assembly: hg38
Creation Date: 2017-10-31
Views: 1022
1509436800 1022
Description:
Author: heathhm
Session Name: FALL19 Yeast test HMH
Genome Assembly: sacCer3
Creation Date: 2019-08-30
Views: 736
1567152000 736
Description:
Author: farshad
Session Name: BRCA_hg19_H3K27Ac_related_profiles20170517
Genome Assembly: hg19
Creation Date: 2017-05-17
Views: 993
1495008000 993
Description:
Author: ekrobins
Session Name: TSS_CAGE
Genome Assembly: hg19
Creation Date: 2017-05-17
Views: 1342
1495008000 1342
Description:
Author: nbosch
Session Name: CRIM1
Genome Assembly: hg19
Creation Date: 2017-05-15
Views: 1124
1494835200 1124
Description:
Author: brianlee
Session Name: hg38.refSeq.UCSC
Genome Assembly: hg38
Creation Date: 2017-05-12
Views: 1158
1494576000 1158
Description:
Author: Francesco_Ferrari
Session Name: rs7599312_SNP
Genome Assembly: hg19
Creation Date: 2017-10-17
Views: 1043
1508227200 1043
Description:
Author: sajjeev
Session Name: progeria_JB
Genome Assembly: mm10
Creation Date: 2019-05-23
Views: 825
1558598400 825
Description:
Author: suestring
Session Name: example_DCdiffCA
Genome Assembly: hub_432097_DC
Creation Date: 2019-05-22
Views: 847
1558512000 847
Description:
Author: suestring
Session Name: hub_432097_ZebraFish
Genome Assembly: hub_432097_ZebraFish
Creation Date: 2019-05-28
Views: 803
1559030400 803
Description:
Author: cocopow
Session Name: hg38_primates
Genome Assembly: hg38
Creation Date: 2019-05-09
Views: 851
1557388800 851
Description:
Author: russiandash
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2019-05-13
Views: 918
1557734400 918
Description:
Author: DearDanielxd
Session Name: mm10
Genome Assembly: mm10
Creation Date: 2017-04-25
Views: 1101
1493107200 1101
Description:
Author: yayinano
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2017-04-21
Views: 1077
1492761600 1077
Description:
Author: linzho
Session Name: Zoltan_SA3_chip_data
Genome Assembly: hg19
Creation Date: 2019-05-15
Views: 798
1557907200 798
Description:
Author: swarnaseetha
Session Name: TET5hmcTriplicates
Genome Assembly: mm10
Creation Date: 2019-10-08
Views: 782
1570521600 782
Description:
Author: i.bader@salk.at
Session Name: hg19_GJB2
Genome Assembly: hg19
Creation Date: 2019-05-15
Views: 789
1557907200 789
Description:
Author: i.bader@salk.at
Session Name: hg19_SLC26A4
Genome Assembly: hg19
Creation Date: 2019-05-15
Views: 801
1557907200 801
Description:
Author: sayloren
Session Name: hg19-chr12-probes
Genome Assembly: hg19
Creation Date: 2017-04-07
Views: 1233
1491552000 1233
Description:
Author: GDJ_Duke
Session Name: SJC_BAC_Lib_GDJ_PER1_BAC
Genome Assembly: hg38
Creation Date: 2018-09-06
Views: 916
1536220800 916
Description:
Author: liyq
Session Name: mm10_2016
Genome Assembly: mm10
Creation Date: 2017-03-18
Views: 1111
1489824000 1111
Description:
Author: PublicSessions
Session Name: N-masked regions on the Y chromosome for hg38
Genome Assembly: hg38
Creation Date: 2017-03-14
Views: 1295
1489478400 1295
Description:
Author: gartnerj928
Session Name: Devi_methyl_IP_tracks
Genome Assembly: mm10
Creation Date: 2017-03-13
Views: 1376
1489392000 1376
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K9me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1131
1489132800 1131
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K9ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1127
1489132800 1127
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K4me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1123
1489132800 1123
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K4me2
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1096
1489132800 1096
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K4me1
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1161
1489132800 1161
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K36me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1145
1489132800 1145
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K27me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1208
1489132800 1208
Description:
Author: xulab
Session Name: tps_P0_ptm_H3K27ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1138
1489132800 1138
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K9me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1092
1489132800 1092
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K9ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1098
1489132800 1098
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K4me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1105
1489132800 1105
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K4me2
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1079
1489132800 1079
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K4me1
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1092
1489132800 1092
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K36me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1131
1489132800 1131
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K27me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1137
1489132800 1137
Description:
Author: xulab
Session Name: tps_E16_ptm_H3K27ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1130
1489132800 1130
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K9me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1092
1489132800 1092
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K9ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1108
1489132800 1108
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K4me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1096
1489132800 1096
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K4me2
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1101
1489132800 1101
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K4me1
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1106
1489132800 1106
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K36me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1084
1489132800 1084
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K27me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1102
1489132800 1102
Description:
Author: xulab
Session Name: tps_E15_ptm_H3K27ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1112
1489132800 1112
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K9me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1094
1489132800 1094
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K9ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1098
1489132800 1098
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K4me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1118
1489132800 1118
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K4me2
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1134
1489132800 1134
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K4me1
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1077
1489132800 1077
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K36me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1064
1489132800 1064
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K27me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1107
1489132800 1107
Description:
Author: xulab
Session Name: tps_E14_ptm_H3K27ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1085
1489132800 1085
Description:
Author: xulab
Session Name: tps_E14_ptm_CTCF
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1111
1489132800 1111
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K9me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1235
1489132800 1235
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K9ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1080
1489132800 1080
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K4me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1155
1489132800 1155
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K4me2
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1108
1489132800 1108
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K4me1
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1078
1489132800 1078
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K36me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1070
1489132800 1070
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K27me3
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1163
1489132800 1163
Description:
Author: xulab
Session Name: tps_ALL_ptm_H3K27ac
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1168
1489132800 1168
Description:
Author: xulab
Session Name: tps_ALL_ptm_CTCF
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1207
1489132800 1207
Description:
Author: xulab
Session Name: tps_P0_ptm_ALL
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1117
1489132800 1117
Description:
Author: xulab
Session Name: tps_E16_ptm_ALL
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1099
1489132800 1099
Description:
Author: xulab
Session Name: tps_E15_ptm_ALL
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1115
1489132800 1115
Description:
Author: xulab
Session Name: tps_E14_ptm_ALL
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1114
1489132800 1114
Description:
Author: xulab
Session Name: tps_ALL_ptm_ALL
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1710
1489132800 1710
Description:
Author: ccornwel
Session Name: cfac
Genome Assembly: canFam3
Creation Date: 2016-09-26
Views: 1158
1474876800 1158
Description:
Author: cocopow
Session Name: hg19-17q12
Genome Assembly: hg19
Creation Date: 2019-01-03
Views: 876
1546502400 876
Description:
Author: rtmag4
Session Name: HCT116_ATAC_SEQ_TBLAB
Genome Assembly: hg38
Creation Date: 2017-03-03
Views: 1249
1488528000 1249
Description:
Author: xulab
Session Name: tps_P0_ptm_CTCF
Genome Assembly: mm10
Creation Date: 2017-03-10
Views: 1087
1489132800 1087
Description:
Author: adriennelovett
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-02-24
Views: 1128
1487923200 1128
Description:
Author: estercastillo
Session Name: AnaBelen_USalamanca_TP53
Genome Assembly: hg19
Creation Date: 2018-05-02
Views: 1008
1525248000 1008
Description:
Author: Francesco_Ferrari
Session Name: AMLiPSC_H3K27Ac_ChIPseq_final_H3K27Ac
Genome Assembly: hg19
Creation Date: 2017-02-17
Views: 1170
1487318400 1170
Description:
Author: jberus
Session Name: Bio2010-JB
Genome Assembly: hg18
Creation Date: 2017-02-16
Views: 1116
1487232000 1116
Description:
Author: SB
Session Name: hg38_ALK E20 Cas9
Genome Assembly: hg38
Creation Date: 2017-02-15
Views: 1123
1487145600 1123
Description: We have recently released a file type called "longTabix" which supports inter & intra-chromosomal interactions by drawing an "arc" among paired regions in the UCSC Genome Browser. Note the first track at the top of the display, you can click on any of the "arcs" or interaction connections to see details such as ID and score. Credit goes to Cath Tyner for the creation of this session. Link to the original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ
Author: PublicSessions
Session Name: Viewing inter- & intra-chromosomal interactions
Genome Assembly: hg19
Creation Date: 2017-02-13
Views: 1140
1486972800 1140
Description:
Author: Francesco_Ferrari
Session Name: AMLiPSC_H3K27Ac_ChIPseq_CORRECTED
Genome Assembly: hg19
Creation Date: 2017-02-10
Views: 1102
1486713600 1102
Description:
Author: Francesco_Ferrari
Session Name: AMLiPSC_H3K27Ac_ChIPseq_CORRECTED_autoscaled
Genome Assembly: hg19
Creation Date: 2017-02-13
Views: 1125
1486972800 1125
Description:
Author: Francesco_Ferrari
Session Name: AMLiPSC_H3K27Ac_ChIPseq_days_5_20_35_40
Genome Assembly: hg19
Creation Date: 2017-02-01
Views: 1138
1485936000 1138
Description:
Author: thomas.sparks
Session Name: 181227-atac1-encode_dnase
Genome Assembly: mm10
Creation Date: 2018-12-27
Views: 898
1545897600 898
Description:
Author: xrdong10
Session Name: hg19_fdek
Genome Assembly: hg19
Creation Date: 2017-01-24
Views: 1185
1485244800 1185
Description:
Author: rikrdo89
Session Name: rna-seq cardiac
Genome Assembly: mm9
Creation Date: 2017-01-24
Views: 1160
1485244800 1160
Description:
Author: Francesco_Ferrari
Session Name: AMLiPSC_H3K27Ac_ChIPseq
Genome Assembly: hg19
Creation Date: 2017-01-23
Views: 1125
1485158400 1125
Description:
Author: ryansamuel13
Session Name: TAS2R28 Gene
Genome Assembly: hg19
Creation Date: 2017-01-23
Views: 1125
1485158400 1125
Description:
Author: Shockwing
Session Name: South, Spring17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-01-16
Views: 1097
1484553600 1097
Description:
Author: ryansamuel13
Session Name: Samuel, Spring17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-01-16
Views: 1085
1484553600 1085
Description:
Author: anneabraham1
Session Name: Spring18 Yeast test ALA
Genome Assembly: sacCer3
Creation Date: 2018-01-08
Views: 985
1515398400 985
Description:
Author: harri5al
Session Name: Spring18 Yeast Test (AH)
Genome Assembly: sacCer3
Creation Date: 2018-01-08
Views: 974
1515398400 974
Description:
Author: keitermd
Session Name: Spring17_Correct MOUSE TEST - MDK
Genome Assembly: mm9
Creation Date: 2017-01-09
Views: 1100
1483948800 1100
Description:
Author: khan2sa
Session Name: Spring17 Mouse test (SK)
Genome Assembly: mm9
Creation Date: 2017-01-09
Views: 1120
1483948800 1120
Description:
Author: ryansamuel13
Session Name: Spring17 Worm test (RMS)
Genome Assembly: ce11
Creation Date: 2017-01-09
Views: 1103
1483948800 1103
Description:
Author: keitermd
Session Name: Spring17 MOUSE TEST - MDK
Genome Assembly: mm10
Creation Date: 2017-01-09
Views: 1109
1483948800 1109
Description:
Author: lesevimx
Session Name: Spring17 Mouse test (ML)
Genome Assembly: mm9
Creation Date: 2017-01-09
Views: 1098
1483948800 1098
Description:
Author: idror
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-01-03
Views: 1246
1483430400 1246
Description:
Author: yuelab
Session Name: mm9_min
Genome Assembly: mm9
Creation Date: 2017-01-16
Views: 1123
1484553600 1123
Description:
Author: warrenac
Session Name: GIT-mQTL-ASM
Genome Assembly: hg19
Creation Date: 2016-10-04
Views: 1358
1475568000 1358
Description:
Author: jkearns94
Session Name: Fall 16 481 Final JK
Genome Assembly: mm9
Creation Date: 2016-12-12
Views: 1226
1481529600 1226
Description:
Author: nightfury
Session Name: mm9-fam60a-de
Genome Assembly: mm9
Creation Date: 2016-12-11
Views: 1208
1481443200 1208
Description: Since the reference genome assembly is a series of clone sequences from multiple individuals, and all individuals contain rare alleles, some of these rare alleles are included in reference assemblies. In this case, NM_001103170 (TGc), "c" mismatches the reference assemblies "A" because the reference sequence contains a substitution at this location. Please note that this example is on hg18, many (but not all) of these cases have been addressed in newer assemblies. AADACL3, in particular, does not have this substitution in GRCh38/hg38. Credit goes to Christopher Villarreal for creation of this session. Link to original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/6TG1Pze9rUI/TLsKg7bNAwAJ
Author: PublicSessions
Session Name: hg18.AADACL3_mRNA_discrepancy_vs_reference
Genome Assembly: hg18
Creation Date: 2016-12-09
Views: 1146
1481270400 1146
Description:
Author: yezheng
Session Name: ATAC-seq_mm9_WT-+MU-+
Genome Assembly: mm9
Creation Date: 2019-01-31
Views: 884
1548921600 884
Description:
Author: labrozam
Session Name: Labrozzi, Fall 17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-10-01
Views: 1002
1506844800 1002
Description:
Author: cocopow
Session Name: hg19_bigBed12
Genome Assembly: hg19
Creation Date: 2019-03-21
Views: 821
1553155200 821
Description:
Author: suestring
Session Name: ???
Genome Assembly: hub_162375_Pleuco
Creation Date: 2019-03-08
Views: 765
1552032000 765
Description:
Author: suestring
Session Name: NotFusion
Genome Assembly: hub_162375_Pleuco
Creation Date: 2019-03-08
Views: 825
1552032000 825
Description:
Author: suestring
Session Name: 2
Genome Assembly: hub_162375_Pleuco
Creation Date: 2019-03-08
Views: 826
1552032000 826
Description:
Author: suestring
Session Name: 1
Genome Assembly: hub_162375_Pleuco
Creation Date: 2019-03-08
Views: 832
1552032000 832
Description:
Author: arem
Session Name: hg19 fin
Genome Assembly: hg19
Creation Date: 2019-02-21
Views: 873
1550736000 873
Description:
Author: sureshpsbio
Session Name: mm10_Chip fam40
Genome Assembly: mm10
Creation Date: 2019-02-20
Views: 807
1550649600 807
Description:
Author: ruhollah
Session Name: hg19_1600_chr1_nmt=20
Genome Assembly: hg19
Creation Date: 2019-02-20
Views: 818
1550649600 818
Description:
Author: ruhollah
Session Name: hg19_844_chr7_nmt20
Genome Assembly: hg19
Creation Date: 2019-02-20
Views: 808
1550649600 808
Description:
Author: ruhollah
Session Name: hg19_412Chr8_nmt19
Genome Assembly: hg19
Creation Date: 2019-02-20
Views: 823
1550649600 823
Description:
Author: ruhollah
Session Name: hg19_1148_chr1_nmt18
Genome Assembly: hg19
Creation Date: 2019-02-20
Views: 826
1550649600 826
Description:
Author: liaohy
Session Name: RNAseq_Liu.DY_AM20181126-13
Genome Assembly: mm10
Creation Date: 2019-12-31
Views: 717
1577779200 717
Description:
Author: reparaz
Session Name: hg19 - 1q21.1
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 824
1554105600 824
Description:
Author: ruhollah
Session Name: hg19_986_chr3_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 818
1554105600 818
Description:
Author: ruhollah
Session Name: hg19_1305_chr16_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 778
1554105600 778
Description:
Author: ruhollah
Session Name: hg19_1388_chr1_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 804
1554105600 804
Description:
Author: ruhollah
Session Name: hg19_1136_chr17_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 814
1554105600 814
Description:
Author: ruhollah
Session Name: hg19_1373_chr19_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 804
1554105600 804
Description:
Author: ruhollah
Session Name: hg19_1044_chr2_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 804
1554105600 804
Description:
Author: ruhollah
Session Name: hg19_128_chr14_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 788
1554105600 788
Description:
Author: ruhollah
Session Name: hg19_511_chr14_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 817
1554105600 817
Description:
Author: ruhollah
Session Name: hg19_1111_chr9_nmtf11
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 817
1554105600 817
Description:
Author: ruhollah
Session Name: hg19_237_chr22_nmtf12
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 778
1554105600 778
Description:
Author: ruhollah
Session Name: hg19_1327_chr17_nmtf12
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 811
1554105600 811
Description:
Author: ruhollah
Session Name: hg19_40_chr22_nmtf12
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 811
1554105600 811
Description:
Author: ruhollah
Session Name: hg19_954_chr1_nmtf12
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 793
1554105600 793
Description:
Author: ruhollah
Session Name: hg19_1129_chr17_nmtf12
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 843
1554105600 843
Description:
Author: ruhollah
Session Name: hg19_960_chrX_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 817
1554105600 817
Description:
Author: ruhollah
Session Name: hg19_662_chr6_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 786
1554105600 786
Description:
Author: ruhollah
Session Name: hg19_876_chr17_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 822
1554105600 822
Description:
Author: ruhollah
Session Name: hg19_149_chr1_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 821
1554105600 821
Description:
Author: bashamal
Session Name: basham hg38 assignment 10/10
Genome Assembly: hg38
Creation Date: 2017-10-09
Views: 1038
1507536000 1038
Description:
Author: vperreau@unimelb.edu.au
Session Name: mm10 celltype NTRK2
Genome Assembly: mm10
Creation Date: 2018-12-04
Views: 247
1543910400 247
Screenshot not available
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Description:
Author: Tao Zhang
Session Name: chicken transcriptome
Genome Assembly: hub_30425_galGal4
Creation Date: 2016-11-29
Views: 1334
1480406400 1334
Description:
Author: chkcole
Session Name: TN5_Prime_Alignments
Genome Assembly: hg38
Creation Date: 2017-10-24
Views: 1136
1508832000 1136
Screenshot not available
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Description:
Author: maria pia miano
Session Name: hg19s
Genome Assembly: hg19
Creation Date: 2016-11-16
Views: 1270
1479283200 1270
Description:
Author: jtm
Session Name: shiny_app_mm10_v2
Genome Assembly: mm10
Creation Date: 2018-11-05
Views: 1157
1541404800 1157
Description:
Author: headricn
Session Name: Fall16 481 final CH
Genome Assembly: mm9
Creation Date: 2016-12-11
Views: 1207
1481443200 1207
Screenshot not available
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Description:
Author: Courtney Stout
Session Name: AMD hg38 APOE SNP (CS)
Genome Assembly: hg38
Creation Date: 2016-11-04
Views: 1249
1478246400 1249
Screenshot not available
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Description:
Author: Courtney Stout
Session Name: hg38 AMD CNN2 SNP (CS)
Genome Assembly: hg38
Creation Date: 2016-11-04
Views: 1260
1478246400 1260
Screenshot not available
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Description:
Author: Courtney Stout
Session Name: hg38 AMD APOE SNP(CS)
Genome Assembly: hg38
Creation Date: 2016-11-04
Views: 1257
1478246400 1257
Screenshot not available
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Description:
Author: Courtney Stout
Session Name: hg38 AMD SNPs
Genome Assembly: hg38
Creation Date: 2016-10-27
Views: 1275
1477555200 1275
Description: This session highlights the differences in microRNA expression between endothelial cells and other primary cells types. The data in this session comes from the "Towards the human cellular microRNAome" public hub, created by Marc Halushka and Arun Patil at the Johns Hopkins Medical Institute.
Author: chmalee
Session Name: hg38_microRNA_cell_expression
Genome Assembly: hg38
Creation Date: 2017-09-11
Views: 1985
1505116800 1985
Description:
Author: troy.dumenil@qimr.edu.au
Session Name: MMR-branchpoints-260318
Genome Assembly: hg19
Creation Date: 2018-03-26
Views: 994
1522051200 994
Description:
Author: rmaus
Session Name: nha_PE
Genome Assembly: mm8
Creation Date: 2016-10-18
Views: 1238
1476777600 1238
Description:
Author: Sega666
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2016-10-19
Views: 1109
1476864000 1109
Description:
Author: cath
Session Name: v339publicSessionTest
Genome Assembly: hg38
Creation Date: 2016-10-04
Views: 1172
1475568000 1172
Screenshot not available
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Description:
Author: Isilver1
Session Name: PCBP2_CLIP-seq_Reps1-3
Genome Assembly: mm10
Creation Date: 2017-03-28
Views: 1158
1490688000 1158
Description:
Author: Sega666
Session Name: 02.11
Genome Assembly: hg19
Creation Date: 2016-11-02
Views: 1168
1478073600 1168
Description:
Author: artman1967
Session Name: hg19_ATAC_2019
Genome Assembly: hg19
Creation Date: 2019-03-28
Views: 859
1553760000 859
Description:
Author: mirigitik
Session Name: bahcc1
Genome Assembly: mm9
Creation Date: 2016-05-16
Views: 1227
1463385600 1227
Description:
Author: sergi.villatoro
Session Name: Pangaea Biotech
Genome Assembly: hg19
Creation Date: 2016-09-14
Views: 1286
1473840000 1286
Description:
Author: zxtzhangqian
Session Name: 3a-tet2
Genome Assembly: mm9
Creation Date: 2016-09-14
Views: 1167
1473840000 1167
Description:
Author: vivekgopalanmedgenome
Session Name: hg19_panel_design_JRK
Genome Assembly: hg19
Creation Date: 2016-09-11
Views: 1286
1473580800 1286
Description:
Author: sergi.villatoro
Session Name: Pangaea Biotech GenneReader
Genome Assembly: hg19
Creation Date: 2016-09-16
Views: 1243
1474012800 1243
Description:
Author: sushivision
Session Name: TKNK31-090116
Genome Assembly: mm9
Creation Date: 2016-09-02
Views: 1126
1472803200 1126
Screenshot not available
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Description:
Author: lijunyao@usc.edu
Session Name: C2H2_type_1
Genome Assembly: hg19
Creation Date: 2016-09-01
Views: 1208
1472716800 1208
Description:
Author: sambuca_shot
Session Name: mouse_reprog
Genome Assembly: mm10
Creation Date: 2016-03-23
Views: 1286
1458720000 1286
Description: GTEx Allele Specific Expression hub from the Lappalainen Lab at the New York Genome Center. This session shows a region along chromosome 17 of high skin-specific allelic imbalance in a large number of Keratin genes.
Author: chmalee
Session Name: hg19KeratinAse
Genome Assembly: hg19
Creation Date: 2016-08-30
Views: 2218
1472544000 2218
Description:
Author: pfiziev
Session Name: t_cell_development.H3K4me2 DECSTEP
Genome Assembly: mm9
Creation Date: 2016-08-26
Views: 1222
1472198400 1222
Description:
Author: ps
Session Name: hg19.newTargets
Genome Assembly: hg19
Creation Date: 2016-08-26
Views: 1267
1472198400 1267
Description: We sequenced the hermaphroditic freshwater snail, Biomphalaria glabrata (strain BB02), the host for the medically important trematode parasite, Schistosoma mansoni, using 1X coverage from plasmids and 0.1X BAC end sequencing on the ABI3730xl and 10X coverage sequenced on the Roche 454 Sequencer (including 2 paired end read runs) was initially assembled with Newbler. The Newbler assembly was screened for contamination then merged with a Soap assembly of Illumina reads followed by use of an in-house program for collapsing of redundant heterozygous contigs. Next, we applied our program, GapCloser, which closes gaps in the assembly by making iterative joins using Illumina reads. Finally we removed contigs less than 200 bases and incorporated reads into the assembly that had been assembled in a prior version of the Newbler assembly but were not assembled in this round. The resulting assembly, going by the name of assembly version 4.3, is 898.9Mb bases with an N50 contig length of 6.9kb and N50 scaffold length of 42kb. For creation of the linkage group AGP files, we identified all scaffolds that were uniquely placed on a single linkage group. Because of low marker density, only 145Mb was localized to specific linkage groups and scaffolds could not be ordered and oriented within linkage groups. Therefore, the scaffolds were simply placed in the order suggested by the linkage mapping on *_random for each linkage group. Credits: B. glabrata BB02 samples - Omar dos Santos Carvalho, Centro de Pesquisas Rene Rachou-Fiocruz (sample location: Barreiro, Brazil) BAC library - Coen M. Adema et al. (2006) Sequencing and Assembly - The Genome Institute, Washington University School of Medicine Linkage map - Jacob Tennessen and Michael Blouin, Oregon State University White Paper - Matty Knight et al (2003) Others - - Fred Lewis Biomedical Research Institute of the American Foundation of Biomedical Research - Eric Loker University of New Mexico Biology - Nithya Raghavan Biomedical Research Institute of the American Foundation of Biomedical Research
Author: lijing
Session Name: hub_107761_bioGla0
Genome Assembly: hub_107761_bioGla0
Creation Date: 2016-08-24
Views: 1321
1472025600 1321
Description:
Author: elinshiao
Session Name: HEK293T_all
Genome Assembly: hg19
Creation Date: 2020-09-07
Views: 563
1599465600 563
Description:
Author: mperelis
Session Name: Stein_PDX1
Genome Assembly: mm10
Creation Date: 2016-09-30
Views: 1333
1475222400 1333
Description:
Author: treparriscos
Session Name: Sara_poised_enhancers_1xnorm_mm10_2
Genome Assembly: mm10
Creation Date: 2016-06-03
Views: 777
1464940800 777
Description:
Author: sappingtonae
Session Name: test
Genome Assembly: hg38
Creation Date: 2016-08-15
Views: 1314
1471248000 1314
Description:
Author: yezheng
Session Name: ATAC-seq_mm9
Genome Assembly: mm9
Creation Date: 2018-01-22
Views: 1345
1516608000 1345
Description:
Author: robert-cornell@uiowa.edu
Session Name: Lidral, hg19, CL/P GWAS intervals
Genome Assembly: hg19
Creation Date: 2014-09-18
Views: 799
1411027200 799
Description:
Author: shiguoming
Session Name: mm9_160812
Genome Assembly: mm9
Creation Date: 2016-08-11
Views: 772
1470902400 772
Description:
Author: ykumar84
Session Name: mm10_Oct4
Genome Assembly: mm10
Creation Date: 2019-07-22
Views: 792
1563782400 792
Description: This is an assembly hub for the AgamP4 assembly of Anopheles gambiae PEST strain. It includes the assembly; the coding genes and pseudogenes from vectorbase version 4.3; predicted stop codon readthrough regions; PhyloCSF tracks showing evolutionary protein-coding potential; splice-prediction tracks using the maximum-entropy splice-prediction algorithm; and novel coding and pseudogene predictions using PhyloCSF, excluding regions already annotated in vectorbase version 4.3.
Author: iljungr
Session Name: AgamP4
Genome Assembly: hub_102577_AgamP4
Creation Date: 2016-08-09
Views: 1277
1470729600 1277
Description:
Author: brianlee
Session Name: mm9.RP23.470O14
Genome Assembly: mm9
Creation Date: 2016-08-03
Views: 1017
1470211200 1017
Description:
Author: cocopow
Session Name: hub_1567195_araTha1_remap
Genome Assembly: hub_1567195_araTha1
Creation Date: 2019-09-04
Views: 812
1567584000 812
Description:
Author: QAtester3
Session Name: ce11_ENCODE_hub
Genome Assembly: ce11
Creation Date: 2018-02-08
Views: 905
1518076800 905
Description:
Author: QAtester3
Session Name: !@!$(GSDFG
Genome Assembly: galGal6
Creation Date: 2019-01-22
Views: 858
1548144000 858
Description: This session of gene prediction tracks for "heart genes" uses the interact and bigGenePred formats to create decorations and the image of a heart. Read more about the interact format and bigGenePred formats from links on the Data File Formats help page under the Help menu and FAQs: http://genome.ucsc.edu/FAQ/FAQformat.html
Author: PublicSessions
Session Name: heart
Genome Assembly: hg38
Creation Date: 2019-02-11
Views: 3349
1549872000 3349
Description:
Author: PublicSessions
Session Name: Tabula_muris
Genome Assembly: mm10
Creation Date: 2019-04-05
Views: 822
1554451200 822
Description:
Author: cook2wj
Session Name: Alpha Syn Chip Data
Genome Assembly: hg18
Creation Date: 2016-07-22
Views: 1259
1469174400 1259
Description:
Author: matthew.law
Session Name: MTAP_melanoma
Genome Assembly: hg19
Creation Date: 2016-07-25
Views: 1280
1469433600 1280
Description:
Author: lesevimx
Session Name: Alpha Syn Chip Data
Genome Assembly: hg18
Creation Date: 2016-07-21
Views: 1270
1469088000 1270
Description:
Author: jpate2
Session Name: CGEMS Yeast TRJP primers test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1244
1469088000 1244
Description:
Author: hadani81
Session Name: CGEMS Mouse HD/MC/JD Test
Genome Assembly: mm9
Creation Date: 2016-07-21
Views: 1161
1469088000 1161
Description:
Author: Nithesh
Session Name: CGEMS Yeast NPC test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1175
1469088000 1175
Description:
Author: monroejd
Session Name: CGEMS Yeast JM
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1117
1469088000 1117
Description:
Author: jpate2
Session Name: CGEMS Yeast TRJP test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1146
1469088000 1146
Description:
Author: kapsakcj
Session Name: CGEMS Mouse CK test
Genome Assembly: mm9
Creation Date: 2016-07-21
Views: 1123
1469088000 1123
Description:
Author: Shockwing
Session Name: CGEMS Yeast (Shockwing) Test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1114
1469088000 1114
Description:
Author: herrsp
Session Name: CGEMS Yeast SPH test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1160
1469088000 1160
Description:
Author: blossta
Session Name: CGEMS Worm TB test
Genome Assembly: ce11
Creation Date: 2016-07-21
Views: 1157
1469088000 1157
Description:
Author: shufengliu
Session Name: CGEMS Human SL test
Genome Assembly: hg38
Creation Date: 2016-07-21
Views: 1428
1469088000 1428
Description:
Author: klj002
Session Name: CGEMS Worm (KLJ SFB) test
Genome Assembly: ce11
Creation Date: 2016-07-21
Views: 1147
1469088000 1147
Description:
Author: MaxHenderson
Session Name: CGEMS Yeast MEH test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1120
1469088000 1120
Description:
Author: cook2wj
Session Name: CGEMS Human WCSK test
Genome Assembly: hg38
Creation Date: 2016-07-21
Views: 1159
1469088000 1159
Description:
Author: bravonja
Session Name: CGEMS Human JBSP test
Genome Assembly: hg38
Creation Date: 2016-07-21
Views: 1164
1469088000 1164
Description:
Author: stjacqrm
Session Name: CGEMS Yeast RMSJ test
Genome Assembly: sacCer3
Creation Date: 2016-07-21
Views: 1146
1469088000 1146
Description:
Author: s.jurg96
Session Name: CGEMS worm SJ EA CG test
Genome Assembly: ce11
Creation Date: 2016-07-21
Views: 1173
1469088000 1173
Description:
Author: youngbh
Session Name: CGEMS Mouse BHY Custom Tracks Chr6
Genome Assembly: mm9
Creation Date: 2016-07-21
Views: 1269
1469088000 1269
Description:
Author: youngbh
Session Name: CGEMS Mouse BHY test
Genome Assembly: mm9
Creation Date: 2016-07-21
Views: 1139
1469088000 1139
Description:
Author: youngbh
Session Name: CGEMS Human BHY test
Genome Assembly: hg38
Creation Date: 2016-07-21
Views: 1137
1469088000 1137
Description:
Author: youngbh
Session Name: CGEMS Worm BHY test
Genome Assembly: ce11
Creation Date: 2016-07-21
Views: 1153
1469088000 1153
Description:
Author: dtautz
Session Name: wildmouse
Genome Assembly: mm10
Creation Date: 2016-07-26
Views: 1558
1469520000 1558
Description:
Author: youngbh
Session Name: CGEMS Yeast BHY test
Genome Assembly: sacCer3
Creation Date: 2016-07-20
Views: 1167
1469001600 1167
Description:
Author: arem
Session Name: colon methylation
Genome Assembly: hg19
Creation Date: 2019-03-06
Views: 828
1551859200 828
Screenshot not available
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Description:
Author: Courtney Stout
Session Name: CGems Yeast AH test
Genome Assembly: sacCer3
Creation Date: 2016-07-19
Views: 1134
1468915200 1134
Description:
Author: MWVermunt
Session Name: H3K27ac Human Brain, Vermunt et al (2014) Cell Reports
Genome Assembly: hg19
Creation Date: 2016-07-13
Views: 1376
1468396800 1376
Description:
Author: pliu
Session Name: PRAM_master_set
Genome Assembly: hg38
Creation Date: 2019-01-04
Views: 893
1546588800 893
Description:
Author: sajjeev
Session Name: comic sj15_22
Genome Assembly: hg19
Creation Date: 2019-01-04
Views: 901
1546588800 901
Description:
Author: lijin
Session Name: session7 97L 3 chip
Genome Assembly: hg19
Creation Date: 2016-06-20
Views: 1232
1466409600 1232
Description: This session displays the locations of significant SNPs from the GWAS for breast cancer DFS with P < 1 x 10-5 and eQTL-SNPs from GTEx portal with P < 1 × 10–10.
Author: Wen-Cheng
Session Name: rs1024176
Genome Assembly: hg19
Creation Date: 2018-05-25
Views: 819
1527235200 819
Description: This session demonstrates the GTEx track on the human assembly hg19. The GTEx track shows data from the NIH Genotype-Tissue Expression project and displays expression data for each gene, based on GENCODE gene models, from 51 tissues collected from 570 individual. This session also demonstrates the gene-only mode of the multi-region feature, which removes intergenic regions from the display.
Author: mspeir
Session Name: hg19_gtexAnnouncement
Genome Assembly: hg19
Creation Date: 2016-06-17
Views: 1209
1466150400 1209
Description: This session is demonstrating the exon-only mode of the multi-region feature. The exon-only mode uses the GENCODE v22 track to slice up the normal display and remove both intronic and intergenic regions from the display. Only those regions covered by exons, both coding and noncoding, are left in the display. For more on the multi-region display see the user guide: http://genome.ucsc.edu/goldenPath/help/multiRegionHelp.html.
Author: mspeir
Session Name: hg38_exonOnlyExample
Genome Assembly: hg38
Creation Date: 2016-06-17
Views: 1186
1466150400 1186
Description:
Author: mspeir
Session Name: hg19_CAGrepeat
Genome Assembly: hg19
Creation Date: 2016-06-17
Views: 1267
1466150400 1267
Description: Public session showcasing the GTEx gene expression track and GTEx RNA-seq signal hub for the <a target=_blank href='http://genome.ucsc.edu/blog/gtex-resources-in-the-browser/'>GTEx Resources in the Browser</a> GB blog article. The session shows a genomic region with 5 genes with different patterns of tissue-specific expression.
Author: kate
Session Name: GTEx demo for blog (long, with error)
Genome Assembly: hg19
Creation Date: 2016-06-09
Views: 2656
1465459200 2656
Description:
Author: ruhollah
Session Name: hg19_681_chr15_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 820
1554105600 820
Description: Session highlights a mouse-specific repeat on chromosome 12. You can see the gap in the 60-way vertebrate alignment surrounding the repeat, which is highlighted in light blue. The repeat is classified as a LINE and is part of the L1 family of repeats. Additionally, on the far right-hand side of the display, you can see the retrotransposed Bf3 gene.
Author: mspeir
Session Name: mm10_MouseSpecificRepeat_plus_RetroposedGene
Genome Assembly: mm10
Creation Date: 2016-05-24
Views: 1122
1464076800 1122
Description: Session displays the promoter region of DARC on human assembly hg19 including UCSC Genes, dbSNP 146 (Common subset) and the Publications track showing sequences and SNPs text-mined from PubMed Central and Elsevier. Adapted from Figure 1 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig1
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 1151
1464076800 1151
Description: Session displays the dyskeratosis congenita 1 (DKC1) gene using the exon-only multi-region mode in the human assembly hg38. Alongside the gene structure, tracks displaying dbSNP "flagged" variants, OMIM clinical variants, ENCODE transcription levels from 9 cell lines, a 100-way vertebrate alignment (only a subset of species displayed), and conservation scores calculated using phyloP across this 100-way alignment.
Author: mspeir
Session Name: hg38_DKC1_SNPs_Cons_Transcription
Genome Assembly: hg38
Creation Date: 2016-05-24
Views: 1176
1464076800 1176
Description: Session displays the promoter region and transcription start of IRF1 on human assembly hg19 showing UCSC Genes, 1000 Genomes Phase 3 Integrated Variant Calls in the haplotype sorting VCF display mode, histone mark H3K27Ac binding in overlays of 7 ENCODE cell lines and PhyloP conservation scores from alignments of 100 vertebrates. Adapted from Figure 2 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig2
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 1203
1464076800 1203
Description:
Author: as00419
Session Name: hg38
Genome Assembly: hg38
Creation Date: 2019-05-09
Views: 809
1557388800 809
Description:
Author: lijin
Session Name: session2 four types
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 1264
1460880000 1264
Description:
Author: lijin
Session Name: session5 whole genome methy
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 1345
1461916800 1345
Description:
Author: leipinji
Session Name: hg19-HCT116-liyiming
Genome Assembly: hg19
Creation Date: 2016-04-12
Views: 1055
1460448000 1055
Description:
Author: Julia H-Z
Session Name: Cancer Cell Tracks
Genome Assembly: hg19
Creation Date: 2019-02-19
Views: 871
1550563200 871
Description:
Author: Julia H-Z
Session Name: CC Tracks 2
Genome Assembly: hg19
Creation Date: 2019-02-20
Views: 838
1550649600 838
Description:
Author: jdf228
Session Name: PGC-1 alpha ChIP-seq C2C12
Genome Assembly: mm9
Creation Date: 2017-03-20
Views: 1150
1489996800 1150
Description:
Author: gunasekaran
Session Name: Gunasekaran_Dhandapani_UCSC_mm10
Genome Assembly: mm10
Creation Date: 2019-02-07
Views: 833
1549526400 833
Description:
Author: ascendgene
Session Name: 60genes panel chr1
Genome Assembly: hg19
Creation Date: 2018-07-25
Views: 962
1532505600 962
Description:
Author: peijinlim
Session Name: mm9 nrf2chipseq tracks
Genome Assembly: mm9
Creation Date: 2016-10-19
Views: 1269
1476864000 1269
Description:
Author: SCRB20
Session Name: SCRB20_GOOD
Genome Assembly: hg19
Creation Date: 2016-03-21
Views: 1065
1458547200 1065
Description:
Author: msantos.13
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2019-02-06
Views: 850
1549440000 850
Description:
Author: janzop
Session Name: mm9_HBx-RFP
Genome Assembly: mm9
Creation Date: 2016-09-27
Views: 976
1474963200 976
Description:
Author: lijin
Session Name: session1 Liver 97L exp meth
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 1262
1460880000 1262
Description:
Author: labrozam
Session Name: mm9
Genome Assembly: mm9
Creation Date: 2016-10-02
Views: 1177
1475395200 1177
Description:
Author: wenzelmk
Session Name: BIO 481 hg38 CHR2 Chimp Assignement
Genome Assembly: hg38
Creation Date: 2017-10-10
Views: 1002
1507622400 1002
Description:
Author: kianoush
Session Name: Panels
Genome Assembly: hg19
Creation Date: 2019-03-06
Views: 649
1551859200 649
Description:
Author: arem
Session Name: hg19_chr10_Human
Genome Assembly: hg19
Creation Date: 2019-03-08
Views: 820
1552032000 820
Description:
Author: ephong0305
Session Name: KSG GWAS IA chr1_22 v1
Genome Assembly: hg19
Creation Date: 2021-07-30
Views: 145
1627632000 145
Description:
Author: dunlapea
Session Name: Dunlap, BIO480 Uba1 example
Genome Assembly: hg19
Creation Date: 2016-09-04
Views: 1136
1472976000 1136
Description:
Author: cocopow
Session Name: hg19epigenetics_WASHU_VizHub
Genome Assembly: hg19
Creation Date: 2019-02-07
Views: 855
1549526400 855
Description:
Author: harri5al
Session Name: CGEMS yeast (AH) test
Genome Assembly: sacCer3
Creation Date: 2018-01-08
Views: 976
1515398400 976
Description:
Author: anneabraham1
Session Name: Spring18 Yeast test Abraham
Genome Assembly: sacCer3
Creation Date: 2018-01-08
Views: 997
1515398400 997
Description:
Author: nedaronaghi
Session Name: hg19-all_weeks
Genome Assembly: hg19
Creation Date: 2017-03-07
Views: 1139
1488873600 1139
Description:
Author: Natedawg34
Session Name: fall17 bio630 human NM
Genome Assembly: hg38
Creation Date: 2017-09-13
Views: 1033
1505289600 1033
Description:
Author: Natedawg34
Session Name: Fall 2017 Bio 630 NM
Genome Assembly: hg38
Creation Date: 2017-09-13
Views: 1008
1505289600 1008
Description:
Author: stjacqrm
Session Name: Fall17 Bio630 Yeast RMSJ test
Genome Assembly: sacCer3
Creation Date: 2017-09-13
Views: 1028
1505289600 1028
Description:
Author: alexc
Session Name: MitoGenome Analysis
Genome Assembly: hg38
Creation Date: 2016-05-17
Views: 1021
1463472000 1021
Description:
Author: Natedawg34
Session Name: Miller, Fall17, Uba1
Genome Assembly: mm10
Creation Date: 2017-09-12
Views: 1029
1505203200 1029
Description:
Author: alexc
Session Name: ARUP_cyto
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 1126
1543219200 1126
Description:
Author: leipinji
Session Name: hg19-HCT16-H3K27ac-P53-EP300
Genome Assembly: hg19
Creation Date: 2015-10-22
Views: 1114
1445500800 1114
Description:
Author: hfw824
Session Name: Dou_LADs IgHV
Genome Assembly: hg19
Creation Date: 2015-10-20
Views: 1035
1445328000 1035
Description:
Author: delphine.rolando10
Session Name: hg19_HI-LNCs_UCSCsession
Genome Assembly: hg19
Creation Date: 2016-11-01
Views: 1232
1477987200 1232
Screenshot not available
Click Here to view
Description:
Author: wentao li
Session Name: 2CPD and 64 NT2
Genome Assembly: hg19
Creation Date: 2015-10-06
Views: 977
1444118400 977
Description:
Author: leipinji
Session Name: hg19-hct116-LYM-RNASeq
Genome Assembly: hg19
Creation Date: 2017-10-05
Views: 1015
1507190400 1015
Description:
Author: lianeslaughter
Session Name: mm9-H4K16acRestored
Genome Assembly: mm9
Creation Date: 2017-09-26
Views: 1041
1506412800 1041
Description:
Author: robert-cornell@uiowa.edu
Session Name: evo mels hg19 TFAP2A in hNCC
Genome Assembly: hg19
Creation Date: 2014-05-29
Views: 807
1401350400 807
Description:
Author: GenePeeks
Session Name: .2017.10 Haplotype & HGDP
Genome Assembly: hg19
Creation Date: 2017-10-06
Views: 1073
1507276800 1073
Screenshot not available
Click Here to view
Description:
Author: jcasper
Session Name: bedtoolsvssamtools
Genome Assembly: hg18
Creation Date: 2014-05-27
Views: 953
1401177600 953
Description:
Author: jverploegen
Session Name: GHE sequencing steroids
Genome Assembly: hg19
Creation Date: 2017-10-10
Views: 1053
1507622400 1053
Description:
Author: hs523
Session Name: mm10-ZFP57-SentToAnastasia-merged
Genome Assembly: mm10
Creation Date: 2016-01-13
Views: 1289
1452672000 1289
Description:
Author: GenePeeks
Session Name: .2017 Zoomed-in View 1
Genome Assembly: hg19
Creation Date: 2017-10-09
Views: 1023
1507536000 1023
Description:
Author: taly
Session Name: EnhancerPrediction
Genome Assembly: dm3
Creation Date: 2017-10-10
Views: 1060
1507622400 1060
Description:
Author: rhead
Session Name: 450k.EPIC.beadchip
Genome Assembly: hg19
Creation Date: 2016-11-06
Views: 1175
1478419200 1175
Description: This mailing question allows one to see how you can color the current DNA with data from tracks such as SNP tracks. Load the session, then type "v d" or go to the View menu and then select DNA.<br> Once you are on the "Get DNA for" page do not click "get DNA" rather click the <b>'extended case/color options'</b> button and get Extended DNA Case/Color Output with DNA colored per the SNP tracks (150 in this case) or choose other tracks. <b>Note</b> that the All SNPs are Italic and Blue and the Common SNPs are Bold and Red and when they are both the colors and style combine.
Author: brianlee
Session Name: hg19.MLQ_20306
Genome Assembly: hg19
Creation Date: 2017-10-11
Views: 982
1507708800 982
Description:
Author: robert-cornell@uiowa.edu
Session Name: eliz leslie hg19
Genome Assembly: hg19
Creation Date: 2014-01-17
Views: 785
1389945600 785
Description: This is a session with some highlights.
Author: brianlee
Session Name: moreHighlights
Genome Assembly: hg38
Creation Date: 2019-05-07
Views: 772
1557216000 772
Description:
Author: josoga2
Session Name: chromHmm
Genome Assembly: hg19
Creation Date: 2020-06-09
Views: 646
1591689600 646
Description: nar
Author: as00419
Session Name: example
Genome Assembly: hg38
Creation Date: 2019-05-09
Views: 795
1557388800 795
Description:
Author: ccpowell
Session Name: 50120_solLyc1
Genome Assembly: hub_2224691_solLyc1
Creation Date: 2020-05-07
Views: 661
1588838400 661
Description:
Author: bashamal
Session Name: hg38 chr2 comparison 10/10 in class
Genome Assembly: hg38
Creation Date: 2017-10-10
Views: 1012
1507622400 1012
Description:
Author: estercastillo
Session Name: VanesaGarcia_ClinicoSanCarlos_hotspots_131686
Genome Assembly: hg19
Creation Date: 2017-10-19
Views: 1004
1508400000 1004
Description:
Author: cocopow
Session Name: hg18_44way_bed
Genome Assembly: hg18
Creation Date: 2019-07-24
Views: 741
1563955200 741
Description:
Author: wenzelmk
Session Name: BIO481 Mouse (Wenzel & Zeher) test
Genome Assembly: mm9
Creation Date: 2017-10-05
Views: 983
1507190400 983
Description:
Author: macdonem
Session Name: Bio481 Mouse MacDonald Basham Test
Genome Assembly: mm9
Creation Date: 2017-10-05
Views: 1015
1507190400 1015
Description:
Author: herdaj
Session Name: Bio481 Human Herd Test
Genome Assembly: hg38
Creation Date: 2017-10-05
Views: 1024
1507190400 1024
Description:
Author: labrozam
Session Name: Bio481 Human Labrozzi-Grant test
Genome Assembly: hg38
Creation Date: 2017-10-05
Views: 1019
1507190400 1019
Description:
Author: XiangChen
Session Name: Bio481 Yeast Chen Test
Genome Assembly: sacCer3
Creation Date: 2017-10-05
Views: 1004
1507190400 1004
Description: This session shows the Integrative and Discriminative Epigenome Annotation System (IDEAS) Public Hub, which has data for inferred chromatin states in 127 cell types. A color key for each state is shown near a heatmap on the Track Description page, also found in the related journal <a href="https://academic.oup.com/view-large/figure/97265435/gkx659fig1.jpg/Accurate%20and%20reproducible%20functional%20maps%20in%20127%20human%20cell%20types%20via%202D%20genome%20segmentation">figure 1</a>. This session has some segmentation examples by IDEAS and ChromHMM in HSC and B-cell cell types (9 total) near genes CIITA and CLEC16A. Find more reference information on the Track Description page or at this <a href="https://doi.org/10.1093/nar/gkx659">journal article</a>. The IDEAS algorithm is available on GitHub at <a href="https://github.com/yuzhang123/IDEAS">https://github.com/yuzhang123/IDEAS</a>.
Author: brianlee
Session Name: hg19.IDEAS.hub
Genome Assembly: hg19
Creation Date: 2017-10-05
Views: 1217
1507190400 1217
Description:
Author: estercastillo
Session Name: VanesaGarcia_ClinicoSanCarlos_Pancreas_131774
Genome Assembly: hg19
Creation Date: 2017-10-22
Views: 1020
1508659200 1020
Description:
Author: hujian5241
Session Name: fly_dh1_dm3_bw
Genome Assembly: dm3
Creation Date: 2017-11-13
Views: 997
1510560000 997
Description:
Author: simonwang612
Session Name: Methylation
Genome Assembly: mm10
Creation Date: 2020-07-25
Views: 592
1595664000 592
Description:
Author: anneabraham1
Session Name: Abraham, Spring18, Uba1 example
Genome Assembly: mm9
Creation Date: 2018-01-13
Views: 1219
1515830400 1219
Description:
Author: robert-cornell@uiowa.edu
Session Name: Ruchi tracks hg19
Genome Assembly: hg19
Creation Date: 2014-01-27
Views: 789
1390809600 789
Description:
Author: twx123
Session Name: PTC-mm9-newest
Genome Assembly: mm9
Creation Date: 2015-06-10
Views: 863
1433923200 863
Description:
Author: cocopow
Session Name: hg38_chr17_KCNJ18
Genome Assembly: hg38
Creation Date: 2019-03-07
Views: 836
1551945600 836
Description:
Author: robert-cornell@uiowa.edu
Session Name: mm9 visel enhancers
Genome Assembly: mm9
Creation Date: 2014-01-11
Views: 904
1389427200 904
Description:
Author: Shirley
Session Name: WT-RNA-ribo-seq
Genome Assembly: mm10
Creation Date: 2018-11-20
Views: 339
1542700800 339
Description:
Author: QAtester
Session Name: 111hg38
Genome Assembly: hg38
Creation Date: 2018-12-21
Views: 870
1545379200 870
Description:
Author: Boonede
Session Name: MAPT_DougBoone
Genome Assembly: hg38
Creation Date: 2019-03-11
Views: 840
1552291200 840
Description:
Author: Guillermo6
Session Name: hg19_ashg2014_SNPs
Genome Assembly: hg19
Creation Date: 2017-11-01
Views: 1189
1509523200 1189
Description:
Author: ferhatay
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2016-08-25
Views: 1156
1472112000 1156
Description:
Author: kkarri
Session Name: rn6_transcriptome
Genome Assembly: rn6
Creation Date: 2017-10-27
Views: 1011
1509091200 1011
Description:
Author: wangt5
Session Name: HBEC_VitD
Genome Assembly: hg19
Creation Date: 2017-11-15
Views: 1030
1510732800 1030
Description:
Author: bashamal
Session Name: Basham, Fall17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-10-02
Views: 999
1506931200 999
Description:
Author: cocapo
Session Name: ponAbe3_BTN1A1
Genome Assembly: ponAbe3
Creation Date: 2018-11-15
Views: 879
1542268800 879
Description:
Author: lbenner
Session Name: Sxl
Genome Assembly: dm6
Creation Date: 2016-10-22
Views: 1099
1477123200 1099
Description:
Author: macdonem
Session Name: Old AMD SNPs
Genome Assembly: hg38
Creation Date: 2017-10-31
Views: 981
1509436800 981
Description:
Author: macdonem
Session Name: New AMD SNPs
Genome Assembly: hg38
Creation Date: 2017-10-31
Views: 1004
1509436800 1004
Description:
Author: falbert
Session Name: FP_sacCer3
Genome Assembly: sacCer3
Creation Date: 2013-08-07
Views: 969
1375862400 969
Description:
Author: ruhollah
Session Name: hg19_94Chr12_28
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 863
1543219200 863
Description:
Author: cocopow
Session Name: hg38_ RepeatMasker
Genome Assembly: hg38
Creation Date: 2019-01-24
Views: 878
1548316800 878
Description:
Author: kkaczor
Session Name: cirm_ucla
Genome Assembly: hg38
Creation Date: 2020-11-12
Views: 558
1605168000 558
Description:
Author: cocopow
Session Name: hg38_tf _pc
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 781
1560240000 781
Description:
Author: cocopow
Session Name: hg38_tf_pc2
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 757
1560240000 757
Description:
Author: cocopow
Session Name: hg19_myc+ctcf
Genome Assembly: hg19
Creation Date: 2019-06-11
Views: 935
1560240000 935
Description:
Author: cocopow
Session Name: hg38_myc+ctcf
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 953
1560240000 953
Description:
Author: dtautz
Session Name: wildmouse-introgression
Genome Assembly: mm10
Creation Date: 2017-11-04
Views: 1105
1509782400 1105
Description:
Author: lijin
Session Name: session4 plus h3k27ac density andpeaks
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 1228
1461830400 1228
Description:
Author: lijin
Session Name: session3 plus h3k27ac
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 1244
1461830400 1244
Description:
Author: XiangChen
Session Name: Bio481 Yeast Chen Custom Track
Genome Assembly: sacCer3
Creation Date: 2017-10-17
Views: 984
1508227200 984
Description:
Author: XiangChen
Session Name: Bio481 Chen Gzmm CBRs in Mice Photoreceptors
Genome Assembly: mm9
Creation Date: 2017-11-17
Views: 978
1510905600 978
Description:
Author: jwjiao
Session Name: E13-forebrain-H3K36me3-ChIP
Genome Assembly: mm10
Creation Date: 2017-11-06
Views: 1049
1509955200 1049
Description:
Author: ruhollah
Session Name: hg19_45Chr3_nmt10
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 849
1543305600 849
Description:
Author: ruhollah
Session Name: hg19_56Chr19_nmt10
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 861
1543305600 861
Description:
Author: isilver1
Session Name: PABPC1_CLIP_Public
Genome Assembly: mm10
Creation Date: 2015-07-01
Views: 1605
1435737600 1605
Description:
Author: xiaotiao
Session Name: 4CProject
Genome Assembly: hg38
Creation Date: 2019-03-15
Views: 796
1552636800 796
Description:
Author: zhangjing12
Session Name: 201901-ATAC seq
Genome Assembly: hg38
Creation Date: 2019-03-15
Views: 750
1552636800 750
Description:
Author: hujian5241
Session Name: fly_dh1_dm3
Genome Assembly: dm3
Creation Date: 2017-11-12
Views: 992
1510473600 992
Description:
Author: salima
Session Name: e32_tailseq_5p_3p
Genome Assembly: ce10
Creation Date: 2015-07-03
Views: 1296
1435910400 1296
Description: This session was used to answer a mailing list question about mm9.retina data. You can see how the signal data was processed to create finalized peaks.
Author: brianlee
Session Name: mm9.retina
Genome Assembly: mm9
Creation Date: 2017-11-14
Views: 992
1510646400 992
Description:
Author: keitermd
Session Name: Keiter, Spring 2017, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-01-15
Views: 1067
1484467200 1067
Description:
Author: aurbanow
Session Name: srivatsan
Genome Assembly: hg38
Creation Date: 2020-12-28
Views: 510
1609142400 510
Description:
Author: nicklewis
Session Name: photoreceptor sesh
Genome Assembly: mm9
Creation Date: 2017-11-16
Views: 973
1510819200 973
Description:
Author: nicklewis
Session Name: photorecptor session
Genome Assembly: mm9
Creation Date: 2017-11-16
Views: 987
1510819200 987
Description:
Author: nrhong
Session Name: hg38_KIAA1217
Genome Assembly: hg38
Creation Date: 2018-01-25
Views: 1012
1516867200 1012
Description:
Author: labrozam
Session Name: wt/Nrl-
Genome Assembly: mm9
Creation Date: 2017-11-17
Views: 986
1510905600 986
Description:
Author: german.n
Session Name: zebrafish_Iso-Seq
Genome Assembly: danRer10
Creation Date: 2018-03-16
Views: 1029
1521187200 1029
Description:
Author: ruhollah
Session Name: hg19_1220_chr3_nmtf13
Genome Assembly: hg19
Creation Date: 2019-04-01
Views: 804
1554105600 804
Description:
Author: Yog77
Session Name: chrMT_rCRS_NC012920
Genome Assembly: hg19
Creation Date: 2020-05-20
Views: 648
1589961600 648
Description:
Author: timmnat
Session Name: Figure4-Differences_in_polymorphism_frequency_and_copy number.hub_1106737_Amex_PQ.v4
Genome Assembly: hub_1106737_Amex_PQ.v4
Creation Date: 2020-09-13
Views: 808
1599984000 808
Description:
Author: robert-cornell@uiowa.edu
Session Name: mm9 Loftus/Pavan Tfap2a
Genome Assembly: mm9
Creation Date: 2014-06-23
Views: 794
1403510400 794
Description:
Author: robert-cornell@uiowa.edu
Session Name: tfap2a in Ncc, MITF hg18
Genome Assembly: hg18
Creation Date: 2014-09-30
Views: 806
1412064000 806
Description:
Author: grant2jm
Session Name: Grant, Fall 17, allignment example
Genome Assembly: hg38
Creation Date: 2017-10-09
Views: 984
1507536000 984
Description:
Author: katiegal
Session Name: Lhx3-Isl1-p53
Genome Assembly: mm9
Creation Date: 2014-10-01
Views: 614
1412150400 614
Description:
Author: mattievaz8
Session Name: 062816_Mattie
Genome Assembly: mm10
Creation Date: 2016-06-28
Views: 1229
1467100800 1229
Description:
Author: nicklewis
Session Name: Lewis Fall17 Uba1
Genome Assembly: mm9
Creation Date: 2017-10-03
Views: 965
1507017600 965
Description:
Author: holtonke
Session Name: CGEMS Worm KEH test
Genome Assembly: ce11
Creation Date: 2016-07-21
Views: 1238
1469088000 1238
Description:
Author: alyssa
Session Name: Ayala-Ps2-ACE2-session
Genome Assembly: hg19
Creation Date: 2020-05-07
Views: 650
1588838400 650
Description:
Author: yierjin_2008
Session Name: MMCL.H3K27ac.SEs
Genome Assembly: hg19
Creation Date: 2017-11-10
Views: 1207
1510300800 1207
Description:
Author: ruhollah
Session Name: hg19_72Chr14_nmt14
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 865
1543219200 865
Description:
Author: ShiyiYin
Session Name: mega data with coordinations
Genome Assembly: hg19
Creation Date: 2017-02-08
Views: 1250
1486540800 1250
Description:
Author: ShiyiYin
Session Name: intron6 ehf pcr
Genome Assembly: hg19
Creation Date: 2017-01-27
Views: 1090
1485504000 1090
Description: This session highlights the "Seq-data on mm9 NS5 cells" public hub, where Juan Mateo et al. assayed crucial transcription factor binding activity forming the basis of the neural stem cell self-renewal regulatory network.
Author: chmalee
Session Name: mm9_NS5_Cell_Expression
Genome Assembly: mm9
Creation Date: 2017-11-28
Views: 1514
1511856000 1514
Description:
Author: grant2jm
Session Name: Grant, Fall17, Uba1 example
Genome Assembly: mm9
Creation Date: 2017-10-02
Views: 984
1506931200 984
Description:
Author: isilver1
Session Name: NAD
Genome Assembly: mm10
Creation Date: 2015-03-09
Views: 1259
1425888000 1259
Description:
Author: ruhollah
Session Name: 1_50_outliers_hg19
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 837
1543219200 837
Description:
Author: zheyangshan
Session Name: hg19 GRO-seq BCL2
Genome Assembly: hg19
Creation Date: 2019-01-16
Views: 783
1547625600 783
Description:
Author: mspeir
Session Name: hg19_wobble
Genome Assembly: hg19
Creation Date: 2016-06-17
Views: 1651
1466150400 1651
Description:
Author: toni.berger@medisin.uio.no
Session Name: example1
Genome Assembly: hg19
Creation Date: 2017-11-13
Views: 1003
1510560000 1003
Description:
Author: puertoRico2019
Session Name: DQP
Genome Assembly: hg19
Creation Date: 2019-04-12
Views: 746
1555056000 746
Description:
Author: mziegler
Session Name: encode_Accessibility+TAD
Genome Assembly: hg19
Creation Date: 2018-09-11
Views: 872
1536652800 872
Description:
Author: cath
Session Name: v338test
Genome Assembly: hg38
Creation Date: 2016-09-13
Views: 1159
1473753600 1159
Description:
Author: josoga2
Session Name: joseph_omix_hw
Genome Assembly: mm10
Creation Date: 2020-05-19
Views: 649
1589875200 649
Description:
Author: macdonem
Session Name: Bio481 Mouse MacDonald Basham Custom Track
Genome Assembly: mm9
Creation Date: 2017-10-17
Views: 1007
1508227200 1007
Description:
Author: nicklewis
Session Name: CGEMS Yeast Test - Custom Track
Genome Assembly: sacCer3
Creation Date: 2017-10-17
Views: 995
1508227200 995
Description:
Author: herdaj
Session Name: Bio481 Human Custom Herd
Genome Assembly: hg38
Creation Date: 2017-10-17
Views: 1023
1508227200 1023
Description:
Author: erick.gabriel
Session Name: MYBPC1 alleles
Genome Assembly: hg19
Creation Date: 2018-09-07
Views: 921
1536307200 921
Description:
Author: ruhollah
Session Name: hg19_209Chr7_nmt4
Genome Assembly: hg19
Creation Date: 2019-01-14
Views: 857
1547452800 857
Description:
Author: marzoldr
Session Name: Marzolf, Spring18, Uba1 example
Genome Assembly: mm9
Creation Date: 2018-01-17
Views: 964
1516176000 964
Description: The GeneHancer track relates enhancer and promoters to their interactions with nearby genes. In this display, a highlighted GH01J209814 enhancer is associated with the gene IRF6 (Interferon Regulatory Factor 6) located about 10kb upstream from the gene and harbors regulatory non-coding variants strongly associated to Van Der Woude Syndrome 1 (VWS1), a disease involving cleft lip and cleft palate.
Author: view
Session Name: GeneHancer
Genome Assembly: hg19
Creation Date: 2019-03-29
Views: 769
1553846400 769
Description:
Author: ferrerjm
Session Name: Ferrer, FALL17, yeast custom track
Genome Assembly: sacCer3
Creation Date: 2017-10-17
Views: 1014
1508227200 1014
Description: This session displays a region of the LHX6 gene that highlights a selection of the new tracks added in the previous year for the hg38/GRCh38 human assembly. The tracks shown in this display (from top to bottom) include GENCODE Genes V22, transcription levels assayed across 9 ENCODE cell lines, DNase hypersensitive regions based on data from 95 ENCODE cell lines, genome-wide conservation scores calculated using phastCons, a multiple genome alignment created using Lastz and Multiz, and pathogenic CNVs from the ClinGen database. Adapted from Figure 1 in Speir, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 2016 Jan 4;44(D1):D717-25: http://nar.oxfordjournals.org/content/44/D1/D717.full
Author: mspeir
Session Name: hg38_NAR_2016_Fig1
Genome Assembly: hg38
Creation Date: 2015-08-11
Views: 1375
1439280000 1375
Description:
Author: ruhollah
Session Name: hg19_1_chr15
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 852
1543219200 852
Description:
Author: ruhollah
Session Name: hg19_4_chr3
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 900
1543219200 900
Description:
Author: ruhollah
Session Name: hg19_3_chr14
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 846
1543219200 846
Description:
Author: ruhollah
Session Name: hg19_22Chr19_nmt32
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 858
1543219200 858
Description:
Author: ruhollah
Session Name: hg19_25Chr5_nmt29
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 830
1543219200 830
Description:
Author: ruhollah
Session Name: hg19_69Chr1_nmt29
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 860
1543219200 860
Description:
Author: ruhollah
Session Name: hg19_17Chr3_nmt26
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 859
1543219200 859
Description:
Author: Atma
Session Name: hervh-MYO16
Genome Assembly: hg38
Creation Date: 2019-01-22
Views: 807
1548144000 807
Description: This browsing started on hg38, and then the region was lifted to hg19, and then the TFBS track turned on to show how some histone activity is related to TFBS that aren't seen on hg38 because the track isn't available there.
Author: brianlee
Session Name: hg19_MTOR
Genome Assembly: hg19
Creation Date: 2019-01-22
Views: 861
1548144000 861
Description:
Author: ruhollah
Session Name: hg19_47Chr14_nmt17
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 867
1543219200 867
Description:
Author: ruhollah
Session Name: hg19_55Chr21_nmt19
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 843
1543219200 843
Description:
Author: ruhollah
Session Name: hg19_46ChrX_nmt20
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 848
1543219200 848
Description:
Author: ruhollah
Session Name: hg19_31Chr22_nmt20
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 849
1543219200 849
Description:
Author: ruhollah
Session Name: hg19_37Chr1_nmt21
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 880
1543219200 880
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Description:
Author: ruhollah
Session Name: hg19_18Chr17_21
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 902
1543219200 902
Description:
Author: ruhollah
Session Name: hg19_16Chr5_nmt21
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 869
1543219200 869
Description:
Author: ruhollah
Session Name: hg19_12Chr3_nmt22
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 899
1543219200 899
Description:
Author: ruhollah
Session Name: hg19_95Chr16_nmt17
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 862
1543219200 862
Description:
Author: kinerettaler
Session Name: danRer11_plod3+-100,000
Genome Assembly: danRer11
Creation Date: 2018-12-25
Views: 844
1545724800 844
Description:
Author: ruhollah
Session Name: hg19_26Chr17_nmt14
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 838
1543219200 838
Description:
Author: xiaotiao
Session Name: txiao
Genome Assembly: hg19
Creation Date: 2019-03-13
Views: 820
1552464000 820
Description:
Author: ruhollah
Session Name: hg19_70Chr6_nmt14
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 903
1543219200 903
Description:
Author: ldistefano
Session Name: dm6_LDiStefanoData
Genome Assembly: dm6
Creation Date: 2019-03-12
Views: 781
1552377600 781
Description:
Author: marylaws
Session Name: hg18 Mol Biol Cell 2013 Grant GD
Genome Assembly: hg18
Creation Date: 2017-11-06
Views: 1014
1509955200 1014
Description:
Author: ruhollah
Session Name: hg19_75Chr7_nmt16
Genome Assembly: hg19
Creation Date: 2018-11-26
Views: 837
1543219200 837
Description:
Author: ruhollah
Session Name: hg19_40Chr22_nmt12
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 876
1543305600 876
Description:
Author: ruhollah
Session Name: hg19_49Chr3_nmt12
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 845
1543305600 845
Description:
Author: ruhollah
Session Name: hg19_58Chr1_nmt10
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 847
1543305600 847
Description:
Author: ruhollah
Session Name: hg19_89Chr5_nmt10
Genome Assembly: hg19
Creation Date: 2018-11-27
Views: 880
1543305600 880
Description:
Author: kazuhidew
Session Name: hg38_NAR_submission
Genome Assembly: hg38
Creation Date: 2018-11-28
Views: 918
1543392000 918