Schema for Crowd-Sourced Data - Crowd-sourced data: annotations contributed via bit.ly/cov2annots
  Database: wuhCor1    Primary Table: publicAnnots Data last updated: 2020-05-29
Big Bed File: /gbdb/wuhCor1/bbi/public.bb
Item Count: 105
Format description: Browser extensible data, with extended fields
fieldexampledescription
chromNC_045512v2Reference sequence chromosome or scaffold
chromStart21559Start position in chromosome
chromEnd21597End position in chromosome
nameS_SECReTE_motifShort Name of item
score0Score from 0-1000
strand++ or -
thickStart21559Start of where display should be thick (start codon)
thickEnd21597End of where display should be thick (stop codon)
reserved0Used as itemRgb as of 2004-11-22
extraField0RNACategory
extraField1SECReTE motif that facilitates mRNA localization to the ER, present more frequently in (+) ssRNA viruses which utilize ER membranes to create VRCs. Thought to be important for VRC formation by SARS-CoV-2, serves as a possible drug target.Long descriptive text
extraField2https://www.biorxiv.org/content/10.1101/2020.04.20.050088v1.fullURL to website or paper with further info
extraField3kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.eduYour email

Sample Rows
 
chromchromStartchromEndnamescorestrandthickStartthickEndreservedextraField0extraField1extraField2extraField3
NC_045512v22155921597S_SECReTE_motif0+21559215970RNASECReTE motif that facilitates mRNA localization to the ER, present more frequently in (+) ssRNA viruses which utilize ER membra ...https://www.biorxiv.org/content/10.1101 ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22251723185binds_47D11_Anti...0+22517231850antibodiesEpitope of neutralizing antibody 47D11https://www.nature.com/articles/s41467-020-1625 ...maxh@ucsc.edu
NC_045512v22255822600S309_binding_site0+22558226000primersBinding site for neutralizing antibody S309https://www.biorxiv.org/content/10. ...jferna10@ucsc.edu
NC_045512v22262122645S309_binding_site0+22621226450primersBinding site for neutralizing antibody S309https://www.biorxiv.org/content/10. ...jferna10@ucsc.edu
NC_045512v22266022663V367F_substituti...0+22660226630evolutionV->F substitution isolated in the S protein RBD region which binds with human ACE2 receptors. Isolated in strains from Hong Kong ...https://www.biorxiv.org/content/10. ...kiley.charbonneau@ucsf.edu, maureen.lewis@ucsf.edu, kord.kober@ucsf.edu
NC_045512v22266622678CR3022_binding0+22666226780antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu
NC_045512v22268122720CR3022_binding0+22681227200antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu
NC_045512v22272622732CR3022_binding0+22726227320antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu
NC_045512v22273522738CR3022_binding0+22735227380antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu
NC_045512v22284022852CR3022_binding0+22840228520antibodiesCR3022 is a neutralizing antibody against SARS1, has some affinity for SARS-CoV-2https://science.sciencemag.org/c ...jferna10@ucsc.edu

Crowd-Sourced Data (publicAnnots) Track Description
 

Description

This track shows annotations made via a public spreadsheet available at http://bit.ly/cov2annots.

Anyone can add annotations to this spreadsheet. Once you have added a new annotation, the changes do not go live immediately, but are screened and automatically released on the public site during the next night.

To see the most up-to-date pre-release version of this track, click this link, which will attach a track hub to your current browser view.

Display Conventions and Configuration

Only start-end annotations can be shown. Contact us at genome-www@soe.ucsc.edu if you have feedback on the form, e.g. you need exon or intron lines or have datasets with more than 5-10 annotations.