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Coverage of nucleosome predictions from SOLiD Core Alignments   (All Mapping and Sequencing tracks)

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 Configure 		 NSome Core +Covg  Coverage of mononucleosomal fragments, sense strand reads   Data format 
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Assembly: C. elegans May 2008 (WS190/ce6)
Data coordinates converted via liftOver from: Jan. 2007 (WS170/ce4)

Description

Coverage of mononucleosomal fragments, sense strand reads

The plot represents the coverage by putative mononucleosomal cores (147 base pairs) from micrococcal nuclease cleavage of C. elegans chromatin, using reads that mapped on the sense strand of the reference genome.

Coverage of mononucleosomal fragments, antisense strand reads

The plot represents the coverage by putative mononucleosomal cores (147 base pairs) from micrococcal nuclease cleavage of C. elegans chromatin using reads that mapped on the antisense strand of the reference genome.

Credits

The data for this track is supplied by the Sidow Lab and the Fire Lab at the Stanford School of Medicine.
Track display advice provided by Hiram Clawson, UCSC Genome Browser Engineering.

References

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K et al. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res. 2008 Jul;18(7):1051-63. PMID: 18477713; PMC: PMC2493394

Supported oligo ligation detection (SOLiD) sequencing technology from Applied Biosystems.