Human Dec. 2013 (GRCh38/hg38) Browser Sequences
 
Enter a position, or click on a sequence name to view the entire sequence in the genome browser.

position

Sequence name   Length (bp) including gaps   alias sequence names  
chr1 248,956,422   NC_000001.11, CM000663.2, 1
chr2 242,193,529   NC_000002.12, CM000664.2, 2
chr3 198,295,559   NC_000003.12, CM000665.2, 3
chr4 190,214,555   NC_000004.12, CM000666.2, 4
chr5 181,538,259   NC_000005.10, CM000667.2, 5
chr6 170,805,979   NC_000006.12, CM000668.2, 6
chr7 159,345,973   NC_000007.14, CM000669.2, 7
chr8 145,138,636   NC_000008.11, CM000670.2, 8
chr9 138,394,717   NC_000009.12, CM000671.2, 9
chr10 133,797,422   NC_000010.11, CM000672.2, 10
chr11 135,086,622   NC_000011.10, CM000673.2, 11
chr12 133,275,309   NC_000012.12, CM000674.2, 12
chr13 114,364,328   NC_000013.11, CM000675.2, 13
chr14 107,043,718   NC_000014.9, CM000676.2, 14
chr15 101,991,189   NC_000015.10, CM000677.2, 15
chr16 90,338,345   NC_000016.10, CM000678.2, 16
chr17 83,257,441   NC_000017.11, CM000679.2, 17
chr18 80,373,285   NC_000018.10, CM000680.2, 18
chr19 58,617,616   NC_000019.10, CM000681.2, 19
chr20 64,444,167   NC_000020.11, CM000682.2, 20
chr21 46,709,983   NC_000021.9, CM000683.2, 21
chr22 50,818,468   NC_000022.11, CM000684.2, 22
chrX 156,040,895   X, NC_000023.11, CM000685.2
chrY 57,227,415   Y, NC_000024.10, CM000686.2
chrM 16,569   NC_012920.1, MT, J01415.2
chr1_GL383518v1_alt 182,439   NW_003315905.1, HSCHR1_1_CTG31, GL383518.1
chr1_GL383519v1_alt 110,268   NW_003315906.1, HSCHR1_2_CTG31, GL383519.1
chr1_GL383520v2_alt 366,580   NW_003315907.2, HSCHR1_3_CTG31, GL383520.2
chr1_KI270759v1_alt 425,601   NT_187516.1, KI270759.1, HSCHR1_1_CTG32_1
chr1_KI270760v1_alt 109,528   NT_187514.1, KI270760.1, HSCHR1_1_CTG11
chr1_KI270761v1_alt 165,834   NT_187518.1, KI270761.1, HSCHR1_2_CTG32_1
chr1_KI270762v1_alt 354,444   NT_187515.1, KI270762.1, HSCHR1_1_CTG3
chr1_KI270763v1_alt 911,658   NT_187519.1, KI270763.1, HSCHR1_3_CTG32_1
chr1_KI270764v1_alt 50,258   NT_187521.1, KI270764.1, HSCHR1_4_CTG32_1
chr1_KI270765v1_alt 185,285   NT_187520.1, KI270765.1, HSCHR1_4_CTG31
chr1_KI270766v1_alt 256,271   NT_187517.1, KI270766.1, HSCHR1_2_CTG3
chr1_KI270892v1_alt 162,212   NT_187646.1, KI270892.1, HSCHR1_ALT2_1_CTG32_1
chr1_KN196472v1_fix 186,494   NW_009646194.1, KN196472.1, HG986_PATCH
chr1_KN196473v1_fix 166,200   NW_009646195.1, KN196473.1, HG2058_PATCH
chr1_KN196474v1_fix 122,022   NW_009646196.1, KN196474.1, HG2104_PATCH
chr1_KN538360v1_fix 460,100   NW_011332687.1, KN538360.1, HG1832_PATCH
chr1_KN538361v1_fix 305,542   NW_011332688.1, KN538361.1, HG2095_PATCH
chr1_KQ031383v1_fix 467,143   NW_012132914.1, KQ031383.1, HG1342_HG2282_PATCH
chr1_KQ458382v1_alt 141,019   NW_014040925.1, KQ458382.1, HSCHR1_3_CTG3
chr1_KQ458383v1_alt 349,938   NW_014040926.1, KQ458383.1, HSCHR1_4_CTG3
chr1_KQ458384v1_alt 212,205   NW_014040927.1, KQ458384.1, HSCHR1_5_CTG32_1
chr1_KQ983255v1_alt 278,659   NW_015495298.1, KQ983255.1, HSCHR1_5_CTG3
chr1_KV880763v1_alt 551,020   NW_017852928.1, KV880763.1, HSCHR1_6_CTG3
chr1_KZ208904v1_alt 166,136   NW_018654706.1, KZ208904.1, HSCHR1_8_CTG3
chr1_KZ208905v1_alt 140,355   NW_018654707.1, KZ208905.1, HSCHR1_9_CTG3
chr1_KZ208906v1_fix 330,031   NW_018654708.1, KZ208906.1, HG2002_PATCH
chr1_KZ559100v1_fix 44,955   NW_019805487.1, KZ559100.1, HG460_PATCH
chr1_KI270706v1_random 175,055   NT_187361.1, KI270706.1, HSCHR1_CTG1_UNLOCALIZED
chr1_KI270707v1_random 32,032   NT_187362.1, KI270707.1, HSCHR1_CTG2_UNLOCALIZED
chr1_KI270708v1_random 127,682   NT_187363.1, KI270708.1, HSCHR1_CTG3_UNLOCALIZED
chr1_KI270709v1_random 66,860   NT_187364.1, KI270709.1, HSCHR1_CTG4_UNLOCALIZED
chr1_KI270710v1_random 40,176   NT_187365.1, KI270710.1, HSCHR1_CTG5_UNLOCALIZED
chr1_KI270711v1_random 42,210   NT_187366.1, KI270711.1, HSCHR1_CTG6_UNLOCALIZED
chr1_KI270712v1_random 176,043   NT_187367.1, KI270712.1, HSCHR1_CTG7_UNLOCALIZED
chr1_KI270713v1_random 40,745   NT_187368.1, KI270713.1, HSCHR1_CTG8_UNLOCALIZED
chr1_KI270714v1_random 41,717   NT_187369.1, KI270714.1, HSCHR1_CTG9_UNLOCALIZED
chr2_GL383521v1_alt 143,390   NW_003315908.1, HSCHR2_1_CTG5, GL383521.1
chr2_GL383522v1_alt 123,821   NW_003315909.1, HSCHR2_1_CTG7_2, GL383522.1
chr2_GL582966v2_alt 96,131   NW_003571033.2, HSCHR2_2_CTG7_2, GL582966.2
chr2_KI270767v1_alt 161,578   NT_187523.1, KI270767.1, HSCHR2_1_CTG15
chr2_KI270768v1_alt 110,099   NT_187528.1, KI270768.1, HSCHR2_3_CTG7_2
chr2_KI270769v1_alt 120,616   NT_187522.1, KI270769.1, HSCHR2_1_CTG1
chr2_KI270770v1_alt 136,240   NT_187525.1, KI270770.1, HSCHR2_2_CTG1
chr2_KI270771v1_alt 110,395   NT_187530.1, KI270771.1, HSCHR2_4_CTG7_2
chr2_KI270772v1_alt 133,041   NT_187524.1, KI270772.1, HSCHR2_1_CTG7
chr2_KI270773v1_alt 70,887   NT_187526.1, KI270773.1, HSCHR2_3_CTG1
chr2_KI270774v1_alt 223,625   NT_187529.1, KI270774.1, HSCHR2_4_CTG1
chr2_KI270775v1_alt 138,019   NT_187531.1, KI270775.1, HSCHR2_5_CTG7_2
chr2_KI270776v1_alt 174,166   NT_187527.1, KI270776.1, HSCHR2_3_CTG15
chr2_KI270893v1_alt 161,218   NT_187647.1, KI270893.1, HSCHR2_2_CTG15
chr2_KI270894v1_alt 214,158   NT_187648.1, KI270894.1, HSCHR2_2_CTG7
chr2_KN538362v1_fix 208,149   NW_011332689.1, KN538362.1, HG2233_PATCH
chr2_KN538363v1_fix 365,499   NW_011332690.1, KN538363.1, HG2232_PATCH
chr2_KQ031384v1_fix 481,245   NW_012132915.1, KQ031384.1, HG2290_PATCH
chr2_KQ983256v1_alt 535,088   NW_015495299.1, KQ983256.1, HSCHR2_6_CTG7_2
chr2_KZ208907v1_alt 181,658   NW_018654709.1, KZ208907.1, HSCHR2_7_CTG7_2
chr2_KZ208908v1_alt 140,361   NW_018654710.1, KZ208908.1, HSCHR2_8_CTG7_2
chr2_KI270715v1_random 161,471   NT_187370.1, KI270715.1, HSCHR2_RANDOM_CTG1
chr2_KI270716v1_random 153,799   NT_187371.1, KI270716.1, HSCHR2_RANDOM_CTG2
chr3_GL383526v1_alt 180,671   NW_003315913.1, HSCHR3_1_CTG2_1, GL383526.1
chr3_JH636055v2_alt 173,151   NW_003871060.2, JH636055.2, HSCHR3_1_CTG1
chr3_KI270777v1_alt 173,649   NT_187533.1, KI270777.1, HSCHR3_2_CTG2_1
chr3_KI270778v1_alt 248,252   NT_187536.1, KI270778.1, HSCHR3_3_CTG2_1
chr3_KI270779v1_alt 205,312   NT_187532.1, KI270779.1, HSCHR3_1_CTG3
chr3_KI270780v1_alt 224,108   NT_187537.1, KI270780.1, HSCHR3_4_CTG2_1
chr3_KI270781v1_alt 113,034   NT_187538.1, KI270781.1, HSCHR3_5_CTG2_1
chr3_KI270782v1_alt 162,429   NT_187534.1, KI270782.1, HSCHR3_2_CTG3
chr3_KI270783v1_alt 109,187   NT_187535.1, KI270783.1, HSCHR3_3_CTG1
chr3_KI270784v1_alt 184,404   NT_187539.1, KI270784.1, HSCHR3_9_CTG3
chr3_KI270895v1_alt 162,896   NT_187649.1, KI270895.1, HSCHR3_3_CTG3
chr3_KI270924v1_alt 166,540   NT_187678.1, KI270924.1, HSCHR3_4_CTG3
chr3_KI270934v1_alt 163,458   NT_187688.1, KI270934.1, HSCHR3_5_CTG3
chr3_KI270935v1_alt 197,351   NT_187689.1, KI270935.1, HSCHR3_6_CTG3
chr3_KI270936v1_alt 164,170   NT_187690.1, KI270936.1, HSCHR3_7_CTG3
chr3_KI270937v1_alt 165,607   NT_187691.1, KI270937.1, HSCHR3_8_CTG3
chr3_KN196475v1_fix 451,168   NW_009646197.1, KN196475.1, HG2066_PATCH
chr3_KN196476v1_fix 305,979   NW_009646198.1, KN196476.1, HG2022_PATCH
chr3_KN538364v1_fix 415,308   NW_011332691.1, KN538364.1, HG126_PATCH
chr3_KQ031385v1_fix 373,699   NW_012132916.1, KQ031385.1, HG2235_PATCH
chr3_KQ031386v1_fix 165,718   NW_012132917.1, KQ031386.1, HG2237_PATCH
chr3_KV766192v1_fix 411,654   NW_017363813.1, KV766192.1, HG2236_PATCH
chr3_KZ208909v1_alt 175,849   NW_018654711.1, KZ208909.1, HSCHR3_4_CTG1
chr3_KZ559101v1_alt 164,041   NW_019805488.1, KZ559101.1, HSCHR3_7_CTG2_1
chr3_KZ559102v1_alt 197,752   NW_019805489.1, KZ559102.1, HSCHR3_8_CTG2_1
chr3_KZ559103v1_alt 302,885   NW_019805490.1, KZ559103.1, HSCHR3_9_CTG2_1
chr3_KZ559104v1_fix 105,527   NW_019805491.1, KZ559104.1, HG2133_PATCH
chr3_KZ559105v1_alt 195,063   NW_019805492.1, KZ559105.1, HSCHR3_6_CTG2_1
chr3_GL000221v1_random 155,397   NT_167215.1, HSCHR3UN_CTG2, GL000221.1
chr4_GL000257v2_alt 586,476   NT_167250.2, HSCHR4_1_CTG9, GL000257.2
chr4_GL383527v1_alt 164,536   NW_003315914.1, HSCHR4_1_CTG12, GL383527.1
chr4_GL383528v1_alt 376,187   NW_003315915.1, HSCHR4_1_CTG6, GL383528.1
chr4_KI270785v1_alt 119,912   NT_187542.1, KI270785.1, HSCHR4_2_CTG12
chr4_KI270786v1_alt 244,096   NT_187543.1, KI270786.1, HSCHR4_3_CTG12
chr4_KI270787v1_alt 111,943   NT_187541.1, KI270787.1, HSCHR4_1_CTG8_1
chr4_KI270788v1_alt 158,965   NT_187544.1, KI270788.1, HSCHR4_4_CTG12
chr4_KI270789v1_alt 205,944   NT_187545.1, KI270789.1, HSCHR4_5_CTG12
chr4_KI270790v1_alt 220,246   NT_187540.1, KI270790.1, HSCHR4_1_CTG4
chr4_KI270896v1_alt 378,547   NT_187650.1, KI270896.1, HSCHR4_6_CTG12
chr4_KI270925v1_alt 555,799   NT_187679.1, KI270925.1, HSCHR4_7_CTG12
chr4_KQ090013v1_alt 90,922   NW_013171799.1, KQ090013.1, HSCHR4_2_CTG4
chr4_KQ090014v1_alt 163,749   NW_013171800.1, KQ090014.1, HSCHR4_8_CTG12
chr4_KQ090015v1_alt 236,512   NW_013171801.1, KQ090015.1, HSCHR4_9_CTG12
chr4_KQ983257v1_fix 230,434   NW_015495300.1, KQ983257.1, HG2023_PATCH
chr4_KQ983258v1_alt 205,407   NW_015495301.1, KQ983258.1, HSCHR4_11_CTG12
chr4_KV766193v1_alt 420,675   NW_017363814.1, KV766193.1, HSCHR4_12_CTG12
chr4_GL000008v2_random 209,709   NT_113793.3, HSCHR4_RANDOM_CTG4, GL000008.2
chr5_GL339449v2_alt 1,612,928   NW_003315917.2, HSCHR5_2_CTG1_1, GL339449.2
chr5_GL383530v1_alt 101,241   NW_003315918.1, HSCHR5_3_CTG1_1, GL383530.1
chr5_GL383531v1_alt 173,459   NW_003315919.1, HSCHR5_1_CTG5, GL383531.1
chr5_GL383532v1_alt 82,728   NW_003315920.1, HSCHR5_1_CTG1, GL383532.1
chr5_GL949742v1_alt 226,852   NW_003571036.1, HSCHR5_2_CTG1, GL949742.1
chr5_KI270791v1_alt 195,710   NT_187547.1, KI270791.1, HSCHR5_3_CTG1
chr5_KI270792v1_alt 179,043   NT_187548.1, KI270792.1, HSCHR5_4_CTG1
chr5_KI270793v1_alt 126,136   NT_187550.1, KI270793.1, HSCHR5_5_CTG1
chr5_KI270794v1_alt 164,558   NT_187551.1, KI270794.1, HSCHR5_6_CTG1
chr5_KI270795v1_alt 131,892   NT_187546.1, KI270795.1, HSCHR5_2_CTG5
chr5_KI270796v1_alt 172,708   NT_187549.1, KI270796.1, HSCHR5_4_CTG1_1
chr5_KI270897v1_alt 1,144,418   NT_187651.1, KI270897.1, HSCHR5_1_CTG1_1
chr5_KI270898v1_alt 130,957   NT_187652.1, KI270898.1, HSCHR5_3_CTG5
chr5_KN196477v1_alt 139,087   NW_009646199.1, KN196477.1, HSCHR5_7_CTG1
chr5_KV575243v1_alt 362,221   NW_016107297.1, KV575243.1, HSCHR5_8_CTG1
chr5_KV575244v1_fix 673,059   NW_016107298.1, KV575244.1, HG30_PATCH
chr5_KZ208910v1_alt 135,987   NW_018654712.1, KZ208910.1, HSCHR5_9_CTG1
chr5_GL000208v1_random 92,689   NT_113948.1, HSCHR5_RANDOM_CTG1, GL000208.1
chr6_GL000250v2_alt 4,672,374   NT_167244.2, HSCHR6_MHC_APD_CTG1, GL000250.2
chr6_GL000251v2_alt 4,795,265   NT_113891.3, HSCHR6_MHC_COX_CTG1, GL000251.2
chr6_GL000252v2_alt 4,604,811   NT_167245.2, HSCHR6_MHC_DBB_CTG1, GL000252.2
chr6_GL000253v2_alt 4,677,643   NT_167246.2, HSCHR6_MHC_MANN_CTG1, GL000253.2
chr6_GL000254v2_alt 4,827,813   NT_167247.2, HSCHR6_MHC_MCF_CTG1, GL000254.2
chr6_GL000255v2_alt 4,606,388   NT_167248.2, HSCHR6_MHC_QBL_CTG1, GL000255.2
chr6_GL000256v2_alt 4,929,269   NT_167249.2, HSCHR6_MHC_SSTO_CTG1, GL000256.2
chr6_GL383533v1_alt 124,736   NW_003315921.1, HSCHR6_1_CTG2, GL383533.1
chr6_KB021644v2_alt 185,823   NW_004166862.2, KB021644.2, HSCHR6_1_CTG3
chr6_KI270758v1_alt 76,752   NT_187692.1, KI270758.1, HSCHR6_8_CTG1
chr6_KI270797v1_alt 197,536   NT_187552.1, KI270797.1, HSCHR6_1_CTG4
chr6_KI270798v1_alt 271,782   NT_187553.1, KI270798.1, HSCHR6_1_CTG5
chr6_KI270799v1_alt 152,148   NT_187554.1, KI270799.1, HSCHR6_1_CTG6
chr6_KI270800v1_alt 175,808   NT_187555.1, KI270800.1, HSCHR6_1_CTG7
chr6_KI270801v1_alt 870,480   NT_187556.1, KI270801.1, HSCHR6_1_CTG8
chr6_KI270802v1_alt 75,005   NT_187557.1, KI270802.1, HSCHR6_1_CTG9
chr6_KN196478v1_fix 268,330   NW_009646200.1, KN196478.1, HG2128_PATCH
chr6_KQ031387v1_fix 320,750   NW_012132918.1, KQ031387.1, HG1651_PATCH
chr6_KQ090016v1_fix 245,716   NW_013171802.1, KQ090016.1, HG2072_PATCH
chr6_KQ090017v1_alt 82,315   NW_013171803.1, KQ090017.1, HSCHR6_1_CTG10
chr6_KV766194v1_fix 139,427   NW_017363815.1, KV766194.1, HG2121_PATCH
chr6_KZ208911v1_fix 242,796   NW_018654713.1, KZ208911.1, HG2057_PATCH
chr7_GL383534v2_alt 119,183   NW_003315922.2, HSCHR7_1_CTG6, GL383534.2
chr7_KI270803v1_alt 1,111,570   NT_187562.1, KI270803.1, HSCHR7_2_CTG6
chr7_KI270804v1_alt 157,952   NT_187558.1, KI270804.1, HSCHR7_1_CTG1
chr7_KI270805v1_alt 209,988   NT_187560.1, KI270805.1, HSCHR7_1_CTG7
chr7_KI270806v1_alt 158,166   NT_187559.1, KI270806.1, HSCHR7_1_CTG4_4
chr7_KI270807v1_alt 126,434   NT_187563.1, KI270807.1, HSCHR7_2_CTG7
chr7_KI270808v1_alt 271,455   NT_187564.1, KI270808.1, HSCHR7_3_CTG6
chr7_KI270809v1_alt 209,586   NT_187561.1, KI270809.1, HSCHR7_2_CTG4_4
chr7_KI270899v1_alt 190,869   NT_187653.1, KI270899.1, HSCHR7_2_CTG1
chr7_KQ031388v1_fix 179,932   NW_012132919.1, KQ031388.1, HG2239_PATCH
chr7_KV880764v1_fix 142,129   NW_017852929.1, KV880764.1, HG2088_PATCH
chr7_KV880765v1_fix 468,267   NW_017852930.1, KV880765.1, HG2266_PATCH
chr7_KZ208912v1_fix 589,656   NW_018654714.1, KZ208912.1, HG708_PATCH
chr7_KZ208913v1_alt 680,662   NW_018654715.1, KZ208913.1, HSCHR7_3_CTG4_4
chr7_KZ559106v1_alt 172,555   NW_019805493.1, KZ559106.1, HSCHR7_3_CTG1
chr8_KI270810v1_alt 374,415   NT_187567.1, KI270810.1, HSCHR8_1_CTG7
chr8_KI270811v1_alt 292,436   NT_187565.1, KI270811.1, HSCHR8_1_CTG1
chr8_KI270812v1_alt 282,736   NT_187568.1, KI270812.1, HSCHR8_2_CTG1
chr8_KI270813v1_alt 300,230   NT_187570.1, KI270813.1, HSCHR8_3_CTG1
chr8_KI270814v1_alt 141,812   NT_187566.1, KI270814.1, HSCHR8_1_CTG6
chr8_KI270815v1_alt 132,244   NT_187569.1, KI270815.1, HSCHR8_2_CTG7
chr8_KI270816v1_alt 305,841   NT_187571.1, KI270816.1, HSCHR8_3_CTG7
chr8_KI270817v1_alt 158,983   NT_187573.1, KI270817.1, HSCHR8_4_CTG7
chr8_KI270818v1_alt 145,606   NT_187572.1, KI270818.1, HSCHR8_4_CTG1
chr8_KI270819v1_alt 133,535   NT_187574.1, KI270819.1, HSCHR8_5_CTG7
chr8_KI270820v1_alt 36,640   NT_187575.1, KI270820.1, HSCHR8_6_CTG7
chr8_KI270821v1_alt 985,506   NT_187576.1, KI270821.1, HSCHR8_8_CTG1
chr8_KI270822v1_alt 624,492   NT_187577.1, KI270822.1, HSCHR8_9_CTG1
chr8_KI270900v1_alt 318,687   NT_187654.1, KI270900.1, HSCHR8_5_CTG1
chr8_KI270901v1_alt 136,959   NT_187655.1, KI270901.1, HSCHR8_6_CTG1
chr8_KI270926v1_alt 229,282   NT_187680.1, KI270926.1, HSCHR8_7_CTG1
chr8_KV880766v1_fix 156,998   NW_017852931.1, KV880766.1, HG2067_PATCH
chr8_KV880767v1_fix 265,876   NW_017852932.1, KV880767.1, HG2068_PATCH
chr8_KZ208914v1_fix 165,120   NW_018654716.1, KZ208914.1, HG2419_PATCH
chr8_KZ208915v1_fix 6,367,528   NW_018654717.1, KZ208915.1, HG76_PATCH
chr8_KZ559107v1_alt 103,072   NW_019805494.1, KZ559107.1, HSCHR8_7_CTG7
chr9_GL383539v1_alt 162,988   NW_003315928.1, HSCHR9_1_CTG1, GL383539.1
chr9_GL383540v1_alt 71,551   NW_003315929.1, HSCHR9_1_CTG2, GL383540.1
chr9_GL383541v1_alt 171,286   NW_003315930.1, HSCHR9_1_CTG3, GL383541.1
chr9_GL383542v1_alt 60,032   NW_003315931.1, HSCHR9_1_CTG4, GL383542.1
chr9_KI270823v1_alt 439,082   NT_187578.1, KI270823.1, HSCHR9_1_CTG5
chr9_KN196479v1_fix 330,164   NW_009646201.1, KN196479.1, HG2030_PATCH
chr9_KQ090018v1_alt 163,882   NW_013171804.1, KQ090018.1, HSCHR9_1_CTG6
chr9_KQ090019v1_alt 134,099   NW_013171805.1, KQ090019.1, HSCHR9_1_CTG7
chr9_KI270717v1_random 40,062   NT_187372.1, KI270717.1, HSCHR9_UNLOCALIZED_CTG1
chr9_KI270718v1_random 38,054   NT_187373.1, KI270718.1, HSCHR9_UNLOCALIZED_CTG2
chr9_KI270719v1_random 176,845   NT_187374.1, KI270719.1, HSCHR9_UNLOCALIZED_CTG3
chr9_KI270720v1_random 39,050   NT_187375.1, KI270720.1, HSCHR9_UNLOCALIZED_CTG4
chr10_GL383545v1_alt 179,254   NW_003315934.1, HSCHR10_1_CTG1, GL383545.1
chr10_GL383546v1_alt 309,802   NW_003315935.1, HSCHR10_1_CTG2, GL383546.1
chr10_KI270824v1_alt 181,496   NT_187579.1, KI270824.1, HSCHR10_1_CTG3
chr10_KI270825v1_alt 188,315   NT_187580.1, KI270825.1, HSCHR10_1_CTG4
chr10_KN196480v1_fix 277,797   NW_009646202.1, KN196480.1, HG2191_PATCH
chr10_KN538365v1_fix 14,347   NW_011332692.1, KN538365.1, HG2241_PATCH
chr10_KN538366v1_fix 85,284   NW_011332693.1, KN538366.1, HG2242_HG2243_PATCH
chr10_KN538367v1_fix 420,164   NW_011332694.1, KN538367.1, HG2244_HG2245_PATCH
chr10_KQ090020v1_alt 185,507   NW_013171806.1, KQ090020.1, HSCHR10_1_CTG6
chr10_KQ090021v1_fix 264,545   NW_013171807.1, KQ090021.1, HG2334_PATCH
chr11_GL383547v1_alt 154,407   NW_003315936.1, HSCHR11_1_CTG1_1, GL383547.1
chr11_JH159136v1_alt 200,998   NW_003871073.1, JH159136.1, HG142_HG150_NOVEL_TEST
chr11_JH159137v1_alt 191,409   NW_003871074.1, JH159137.1, HG151_NOVEL_TEST
chr11_KI270826v1_alt 186,169   NT_187581.1, KI270826.1, HSCHR11_1_CTG2
chr11_KI270827v1_alt 67,707   NT_187582.1, KI270827.1, HSCHR11_1_CTG3
chr11_KI270829v1_alt 204,059   NT_187583.1, KI270829.1, HSCHR11_1_CTG5
chr11_KI270830v1_alt 177,092   NT_187584.1, KI270830.1, HSCHR11_1_CTG6
chr11_KI270831v1_alt 296,895   NT_187585.1, KI270831.1, HSCHR11_1_CTG7
chr11_KI270832v1_alt 210,133   NT_187586.1, KI270832.1, HSCHR11_1_CTG8
chr11_KI270902v1_alt 106,711   NT_187656.1, KI270902.1, HSCHR11_2_CTG1
chr11_KI270903v1_alt 214,625   NT_187657.1, KI270903.1, HSCHR11_2_CTG1_1
chr11_KI270927v1_alt 218,612   NT_187681.1, KI270927.1, HSCHR11_3_CTG1
chr11_KN196481v1_fix 108,875   NW_009646203.1, KN196481.1, HG2217_PATCH
chr11_KN538368v1_alt 203,552   NW_011332695.1, KN538368.1, HSCHR11_1_CTG1_2
chr11_KQ090022v1_fix 181,958   NW_013171808.1, KQ090022.1, HG2116_PATCH
chr11_KQ759759v1_fix 196,940   NW_015148966.1, KQ759759.1, HG107_PATCH
chr11_KV766195v1_fix 140,877   NW_017363816.1, KV766195.1, HG1708_PATCH
chr11_KZ559108v1_fix 305,244   NW_019805495.1, KZ559108.1, HG2060_PATCH
chr11_KZ559109v1_fix 279,644   NW_019805496.1, KZ559109.1, HG2114_PATCH
chr11_KZ559110v1_alt 301,637   NW_019805497.1, KZ559110.1, HSCHR11_2_CTG8
chr11_KZ559111v1_alt 181,167   NW_019805498.1, KZ559111.1, HSCHR11_1_CTG3_1
chr11_KI270721v1_random 100,316   NT_187376.1, KI270721.1, HSCHR11_CTG1_UNLOCALIZED
chr12_GL383549v1_alt 120,804   NW_003315938.1, HSCHR12_1_CTG2, GL383549.1
chr12_GL383550v2_alt 169,178   NW_003315939.2, HSCHR12_1_CTG2_1, GL383550.2
chr12_GL383551v1_alt 184,319   NW_003315940.1, HSCHR12_4_CTG2_1, GL383551.1
chr12_GL383552v1_alt 138,655   NW_003315941.1, HSCHR12_2_CTG2_1, GL383552.1
chr12_GL383553v2_alt 152,874   NW_003315942.2, HSCHR12_3_CTG2_1, GL383553.2
chr12_GL877875v1_alt 167,313   NW_003571049.1, HSCHR12_1_CTG1, GL877875.1
chr12_GL877876v1_alt 408,271   NW_003571050.1, HSCHR12_2_CTG2, GL877876.1
chr12_KI270833v1_alt 76,061   NT_187589.1, KI270833.1, HSCHR12_5_CTG2_1
chr12_KI270834v1_alt 119,498   NT_187590.1, KI270834.1, HSCHR12_6_CTG2_1
chr12_KI270835v1_alt 238,139   NT_187587.1, KI270835.1, HSCHR12_4_CTG2
chr12_KI270836v1_alt 56,134   NT_187591.1, KI270836.1, HSCHR12_7_CTG2_1
chr12_KI270837v1_alt 40,090   NT_187588.1, KI270837.1, HSCHR12_5_CTG2
chr12_KI270904v1_alt 572,349   NT_187658.1, KI270904.1, HSCHR12_3_CTG2
chr12_KN196482v1_fix 211,377   NW_009646204.1, KN196482.1, HG23_PATCH
chr12_KN538369v1_fix 541,038   NW_011332696.1, KN538369.1, HG1362_PATCH
chr12_KN538370v1_fix 86,533   NW_011332697.1, KN538370.1, HG2247_PATCH
chr12_KQ090023v1_alt 109,323   NW_013171809.1, KQ090023.1, HSCHR12_2_CTG1
chr12_KQ759760v1_fix 315,610   NW_015148967.1, KQ759760.1, HG2063_PATCH
chr12_KZ208916v1_fix 1,046,838   NW_018654718.1, KZ208916.1, HG1815_PATCH
chr12_KZ208917v1_fix 64,689   NW_018654719.1, KZ208917.1, HG2047_PATCH
chr12_KZ208918v1_alt 174,808   NW_018654720.1, KZ208918.1, HSCHR12_8_CTG2_1
chr12_KZ559112v1_alt 154,139   NW_019805499.1, KZ559112.1, HSCHR12_9_CTG2_1
chr13_KI270838v1_alt 306,913   NT_187592.1, KI270838.1, HSCHR13_1_CTG1
chr13_KI270839v1_alt 180,306   NT_187593.1, KI270839.1, HSCHR13_1_CTG2
chr13_KI270840v1_alt 191,684   NT_187594.1, KI270840.1, HSCHR13_1_CTG3
chr13_KI270841v1_alt 169,134   NT_187595.1, KI270841.1, HSCHR13_1_CTG4
chr13_KI270842v1_alt 37,287   NT_187596.1, KI270842.1, HSCHR13_1_CTG5
chr13_KI270843v1_alt 103,832   NT_187597.1, KI270843.1, HSCHR13_1_CTG6
chr13_KN196483v1_fix 35,455   NW_009646205.1, KN196483.1, HG2216_PATCH
chr13_KN538371v1_fix 206,320   NW_011332698.1, KN538371.1, HG2288_HG2289_PATCH
chr13_KN538372v1_fix 356,766   NW_011332699.1, KN538372.1, HG2291_PATCH
chr13_KN538373v1_fix 148,762   NW_011332700.1, KN538373.1, HG2249_PATCH
chr13_KQ090024v1_alt 168,146   NW_013171810.1, KQ090024.1, HSCHR13_1_CTG7
chr13_KQ090025v1_alt 123,480   NW_013171811.1, KQ090025.1, HSCHR13_1_CTG8
chr14_KI270844v1_alt 322,166   NT_187598.1, KI270844.1, HSCHR14_1_CTG1
chr14_KI270845v1_alt 180,703   NT_187599.1, KI270845.1, HSCHR14_2_CTG1
chr14_KI270846v1_alt 1,351,393   NT_187600.1, KI270846.1, HSCHR14_3_CTG1
chr14_KI270847v1_alt 1,511,111   NT_187601.1, KI270847.1, HSCHR14_7_CTG1
chr14_KZ208919v1_alt 171,798   NW_018654721.1, KZ208919.1, HSCHR14_8_CTG1
chr14_KZ208920v1_fix 690,932   NW_018654722.1, KZ208920.1, HG1_PATCH
chr14_GL000009v2_random 201,709   NT_113796.3, HSCHR14_CTG1_UNLOCALIZED, GL000009.2
chr14_GL000194v1_random 191,469   NT_113888.1, HSCHR14_CTG4_UNLOCALIZED, GL000194.1
chr14_GL000225v1_random 211,173   NT_167219.1, HSCHR14_CTG2_UNLOCALIZED, GL000225.1
chr14_KI270722v1_random 194,050   NT_187377.1, KI270722.1, HSCHR14_CTG3_UNLOCALIZED
chr14_KI270723v1_random 38,115   NT_187378.1, KI270723.1, HSCHR14_CTG5_UNLOCALIZED
chr14_KI270724v1_random 39,555   NT_187379.1, KI270724.1, HSCHR14_CTG6_UNLOCALIZED
chr14_KI270725v1_random 172,810   NT_187380.1, KI270725.1, HSCHR14_CTG7_UNLOCALIZED
chr14_KI270726v1_random 43,739   NT_187381.1, KI270726.1, HSCHR14_CTG8_UNLOCALIZED
chr15_GL383554v1_alt 296,527   NW_003315943.1, HSCHR15_1_CTG8, GL383554.1
chr15_GL383555v2_alt 388,773   NW_003315944.2, HSCHR15_2_CTG8, GL383555.2
chr15_KI270848v1_alt 327,382   NT_187603.1, KI270848.1, HSCHR15_1_CTG3
chr15_KI270849v1_alt 244,917   NT_187605.1, KI270849.1, HSCHR15_3_CTG8
chr15_KI270850v1_alt 430,880   NT_187606.1, KI270850.1, HSCHR15_5_CTG8
chr15_KI270851v1_alt 263,054   NT_187604.1, KI270851.1, HSCHR15_3_CTG3
chr15_KI270852v1_alt 478,999   NT_187602.1, KI270852.1, HSCHR15_1_CTG1
chr15_KI270905v1_alt 5,161,414   NT_187660.1, KI270905.1, HSCHR15_4_CTG8
chr15_KI270906v1_alt 196,384   NT_187659.1, KI270906.1, HSCHR15_2_CTG3
chr15_KN538374v1_fix 4,998,962   NW_011332701.1, KN538374.1, HG2139_PATCH
chr15_KQ031389v1_alt 2,365,364   NW_012132920.1, KQ031389.1, HSCHR15_6_CTG8
chr15_KI270727v1_random 448,248   NT_187382.1, KI270727.1, HSCHR15_RANDOM_CTG1
chr16_GL383556v1_alt 192,462   NW_003315945.1, HSCHR16_1_CTG3_1, GL383556.1
chr16_GL383557v1_alt 89,672   NW_003315946.1, HSCHR16_2_CTG3_1, GL383557.1
chr16_KI270853v1_alt 2,659,700   NT_187607.1, KI270853.1, HSCHR16_1_CTG1
chr16_KI270854v1_alt 134,193   NT_187610.1, KI270854.1, HSCHR16_CTG2
chr16_KI270855v1_alt 232,857   NT_187608.1, KI270855.1, HSCHR16_3_CTG1
chr16_KI270856v1_alt 63,982   NT_187609.1, KI270856.1, HSCHR16_4_CTG1
chr16_KQ031390v1_alt 169,136   NW_012132921.1, KQ031390.1, HSCHR16_3_CTG3_1
chr16_KQ090026v1_alt 59,016   NW_013171812.1, KQ090026.1, HSCHR16_5_CTG1
chr16_KQ090027v1_alt 267,463   NW_013171813.1, KQ090027.1, HSCHR16_4_CTG3_1
chr16_KV880768v1_fix 1,927,115   NW_017852933.1, KV880768.1, HG926_PATCH
chr16_KZ208921v1_alt 78,609   NW_018654723.1, KZ208921.1, HSCHR16_5_CTG3_1
chr16_KZ559113v1_fix 480,415   NW_019805500.1, KZ559113.1, HG2263_PATCH
chr16_KI270728v1_random 1,872,759   NT_187383.1, KI270728.1, HSCHR16_RANDOM_CTG1
chr17_GL000258v2_alt 1,821,992   NT_167251.2, HSCHR17_1_CTG5, GL000258.2
chr17_GL383563v3_alt 375,691   NW_003315952.3, HSCHR17_1_CTG1, GL383563.3
chr17_GL383564v2_alt 133,151   NW_003315953.2, HSCHR17_1_CTG4, GL383564.2
chr17_GL383565v1_alt 223,995   NW_003315954.1, HSCHR17_2_CTG4, GL383565.1
chr17_GL383566v1_alt 90,219   NW_003315955.1, HSCHR17_3_CTG4, GL383566.1
chr17_JH159146v1_alt 278,131   NW_003871091.1, JH159146.1, HSCHR17_4_CTG4
chr17_JH159147v1_alt 70,345   NW_003871092.1, JH159147.1, HSCHR17_5_CTG4
chr17_JH159148v1_alt 88,070   NW_003871093.1, JH159148.1, HSCHR17_6_CTG4
chr17_KI270857v1_alt 2,877,074   NT_187614.1, KI270857.1, HSCHR17_7_CTG4
chr17_KI270858v1_alt 235,827   NT_187615.1, KI270858.1, HSCHR17_8_CTG4
chr17_KI270859v1_alt 108,763   NT_187616.1, KI270859.1, HSCHR17_9_CTG4
chr17_KI270860v1_alt 178,921   NT_187612.1, KI270860.1, HSCHR17_1_CTG9
chr17_KI270861v1_alt 196,688   NT_187611.1, KI270861.1, HSCHR17_1_CTG2
chr17_KI270862v1_alt 391,357   NT_187613.1, KI270862.1, HSCHR17_2_CTG2
chr17_KI270907v1_alt 137,721   NT_187662.1, KI270907.1, HSCHR17_2_CTG1
chr17_KI270908v1_alt 1,423,190   NT_187663.1, KI270908.1, HSCHR17_2_CTG5
chr17_KI270909v1_alt 325,800   NT_187661.1, KI270909.1, HSCHR17_10_CTG4
chr17_KI270910v1_alt 157,099   NT_187664.1, KI270910.1, HSCHR17_3_CTG2
chr17_KV575245v1_fix 154,723   NW_016107299.1, KV575245.1, HG2046_PATCH
chr17_KV766196v1_fix 281,919   NW_017363817.1, KV766196.1, HG2285_HG106_HG2252_PATCH
chr17_KV766197v1_alt 246,895   NW_017363818.1, KV766197.1, HSCHR17_11_CTG4
chr17_KV766198v1_alt 276,292   NW_017363819.1, KV766198.1, HSCHR17_3_CTG1
chr17_KZ559114v1_alt 116,753   NW_019805501.1, KZ559114.1, HSCHR17_12_CTG4
chr17_GL000205v2_random 185,591   NT_113930.2, HSCHR17_RANDOM_CTG3, GL000205.2
chr17_KI270729v1_random 280,839   NT_187384.1, KI270729.1, HSCHR17_RANDOM_CTG4
chr17_KI270730v1_random 112,551   NT_187385.1, KI270730.1, HSCHR17_RANDOM_CTG5
chr18_GL383567v1_alt 289,831   NW_003315956.1, HSCHR18_1_CTG1_1, GL383567.1
chr18_GL383568v1_alt 104,552   NW_003315957.1, HSCHR18_1_CTG2, GL383568.1
chr18_GL383569v1_alt 167,950   NW_003315958.1, HSCHR18_1_CTG2_1, GL383569.1
chr18_GL383570v1_alt 164,789   NW_003315959.1, HSCHR18_2_CTG1_1, GL383570.1
chr18_GL383571v1_alt 198,278   NW_003315960.1, HSCHR18_2_CTG2, GL383571.1
chr18_GL383572v1_alt 159,547   NW_003315961.1, HSCHR18_2_CTG2_1, GL383572.1
chr18_KI270863v1_alt 167,999   NT_187617.1, KI270863.1, HSCHR18_3_CTG2_1
chr18_KI270864v1_alt 111,737   NT_187618.1, KI270864.1, HSCHR18_4_CTG1_1
chr18_KI270911v1_alt 157,710   NT_187666.1, KI270911.1, HSCHR18_ALT2_CTG2_1
chr18_KI270912v1_alt 174,061   NT_187665.1, KI270912.1, HSCHR18_ALT21_CTG2_1
chr18_KQ090028v1_fix 407,387   NW_013171814.1, KQ090028.1, HG2213_PATCH
chr18_KQ458385v1_alt 205,101   NW_014040928.1, KQ458385.1, HSCHR18_5_CTG1_1
chr18_KZ208922v1_fix 93,070   NW_018654724.1, KZ208922.1, HG2442_PATCH
chr18_KZ559115v1_fix 230,843   NW_019805502.1, KZ559115.1, HG2412_PATCH
chr18_KZ559116v1_alt 163,186   NW_019805503.1, KZ559116.1, HSCHR18_1_CTG1
chr19_GL000209v2_alt 177,381   NT_113949.2, HSCHR19KIR_RP5_B_HAP_CTG3_1, GL000209.2
chr19_GL383573v1_alt 385,657   NW_003315962.1, HSCHR19_1_CTG2, GL383573.1
chr19_GL383574v1_alt 155,864   NW_003315963.1, HSCHR19_1_CTG3_1, GL383574.1
chr19_GL383575v2_alt 170,222   NW_003315964.2, HSCHR19_2_CTG2, GL383575.2
chr19_GL383576v1_alt 188,024   NW_003315965.1, HSCHR19_3_CTG2, GL383576.1
chr19_GL949746v1_alt 987,716   NW_003571054.1, HSCHR19LRC_COX1_CTG3_1, GL949746.1
chr19_GL949747v2_alt 729,520   NW_003571055.2, HSCHR19LRC_COX2_CTG3_1, GL949747.2
chr19_GL949748v2_alt 1,064,304   NW_003571056.2, HSCHR19LRC_LRC_I_CTG3_1, GL949748.2
chr19_GL949749v2_alt 1,091,841   NW_003571057.2, HSCHR19LRC_LRC_J_CTG3_1, GL949749.2
chr19_GL949750v2_alt 1,066,390   NW_003571058.2, HSCHR19LRC_LRC_S_CTG3_1, GL949750.2
chr19_GL949751v2_alt 1,002,683   NW_003571059.2, HSCHR19LRC_LRC_T_CTG3_1, GL949751.2
chr19_GL949752v1_alt 987,100   NW_003571060.1, HSCHR19LRC_PGF1_CTG3_1, GL949752.1
chr19_GL949753v2_alt 796,479   NW_003571061.2, HSCHR19LRC_PGF2_CTG3_1, GL949753.2
chr19_KI270865v1_alt 52,969   NT_187621.1, KI270865.1, HSCHR19_4_CTG2
chr19_KI270866v1_alt 43,156   NT_187619.1, KI270866.1, HSCHR19_2_CTG3_1
chr19_KI270867v1_alt 233,762   NT_187620.1, KI270867.1, HSCHR19_3_CTG3_1
chr19_KI270868v1_alt 61,734   NT_187622.1, KI270868.1, HSCHR19_5_CTG2
chr19_KI270882v1_alt 248,807   NT_187636.1, KI270882.1, HSCHR19KIR_FH15_B_HAP_CTG3_1
chr19_KI270883v1_alt 170,399   NT_187637.1, KI270883.1, HSCHR19KIR_G085_A_HAP_CTG3_1
chr19_KI270884v1_alt 157,053   NT_187638.1, KI270884.1, HSCHR19KIR_G085_BA1_HAP_CTG3_1
chr19_KI270885v1_alt 171,027   NT_187639.1, KI270885.1, HSCHR19KIR_G248_A_HAP_CTG3_1
chr19_KI270886v1_alt 204,239   NT_187640.1, KI270886.1, HSCHR19KIR_G248_BA2_HAP_CTG3_1
chr19_KI270887v1_alt 209,512   NT_187641.1, KI270887.1, HSCHR19KIR_GRC212_AB_HAP_CTG3_1
chr19_KI270888v1_alt 155,532   NT_187642.1, KI270888.1, HSCHR19KIR_GRC212_BA1_HAP_CTG3_1
chr19_KI270889v1_alt 170,698   NT_187643.1, KI270889.1, HSCHR19KIR_LUCE_A_HAP_CTG3_1
chr19_KI270890v1_alt 184,499   NT_187644.1, KI270890.1, HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1
chr19_KI270891v1_alt 170,680   NT_187645.1, KI270891.1, HSCHR19KIR_RSH_A_HAP_CTG3_1
chr19_KI270914v1_alt 205,194   NT_187668.1, KI270914.1, HSCHR19KIR_RSH_BA2_HAP_CTG3_1
chr19_KI270915v1_alt 170,665   NT_187669.1, KI270915.1, HSCHR19KIR_T7526_A_HAP_CTG3_1
chr19_KI270916v1_alt 184,516   NT_187670.1, KI270916.1, HSCHR19KIR_T7526_BDEL_HAP_CTG3_1
chr19_KI270917v1_alt 190,932   NT_187671.1, KI270917.1, HSCHR19KIR_ABC08_A1_HAP_CTG3_1
chr19_KI270918v1_alt 123,111   NT_187672.1, KI270918.1, HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1
chr19_KI270919v1_alt 170,701   NT_187673.1, KI270919.1, HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1
chr19_KI270920v1_alt 198,005   NT_187674.1, KI270920.1, HSCHR19KIR_FH05_A_HAP_CTG3_1
chr19_KI270921v1_alt 282,224   NT_187675.1, KI270921.1, HSCHR19KIR_FH05_B_HAP_CTG3_1
chr19_KI270922v1_alt 187,935   NT_187676.1, KI270922.1, HSCHR19KIR_FH06_A_HAP_CTG3_1
chr19_KI270923v1_alt 189,352   NT_187677.1, KI270923.1, HSCHR19KIR_FH06_BA1_HAP_CTG3_1
chr19_KI270929v1_alt 186,203   NT_187683.1, KI270929.1, HSCHR19KIR_FH08_A_HAP_CTG3_1
chr19_KI270930v1_alt 200,773   NT_187684.1, KI270930.1, HSCHR19KIR_FH08_BAX_HAP_CTG3_1
chr19_KI270931v1_alt 170,148   NT_187685.1, KI270931.1, HSCHR19KIR_FH13_A_HAP_CTG3_1
chr19_KI270932v1_alt 215,732   NT_187686.1, KI270932.1, HSCHR19KIR_FH13_BA2_HAP_CTG3_1
chr19_KI270933v1_alt 170,537   NT_187687.1, KI270933.1, HSCHR19KIR_FH15_A_HAP_CTG3_1
chr19_KI270938v1_alt 1,066,800   NT_187693.1, KI270938.1, HSCHR19_4_CTG3_1
chr19_KN196484v1_fix 370,917   NW_009646206.1, KN196484.1, HG2021_PATCH
chr19_KQ458386v1_fix 405,389   NW_014040929.1, KQ458386.1, HG26_PATCH
chr19_KV575246v1_alt 163,926   NW_016107300.1, KV575246.1, HSCHR19KIR_0019-4656-A_CTG3_1
chr19_KV575247v1_alt 170,206   NW_016107301.1, KV575247.1, HSCHR19KIR_CA01-TA01_1_CTG3_1
chr19_KV575248v1_alt 168,131   NW_016107302.1, KV575248.1, HSCHR19KIR_CA01-TA01_2_CTG3_1
chr19_KV575249v1_alt 293,522   NW_016107303.1, KV575249.1, HSCHR19KIR_CA01-TB04_CTG3_1
chr19_KV575250v1_alt 241,058   NW_016107304.1, KV575250.1, HSCHR19KIR_CA01-TB01_CTG3_1
chr19_KV575251v1_alt 159,285   NW_016107305.1, KV575251.1, HSCHR19KIR_HG2394_CTG3_1
chr19_KV575252v1_alt 178,197   NW_016107306.1, KV575252.1, HSCHR19KIR_502960008-2_CTG3_1
chr19_KV575253v1_alt 166,713   NW_016107307.1, KV575253.1, HSCHR19KIR_502960008-1_CTG3_1
chr19_KV575254v1_alt 99,845   NW_016107308.1, KV575254.1, HSCHR19KIR_0010-5217-AB_CTG3_1
chr19_KV575255v1_alt 161,095   NW_016107309.1, KV575255.1, HSCHR19KIR_7191059-1_CTG3_1
chr19_KV575256v1_alt 223,118   NW_016107310.1, KV575256.1, HSCHR19KIR_0019-4656-B_CTG3_1
chr19_KV575257v1_alt 100,553   NW_016107311.1, KV575257.1, HSCHR19KIR_CA04_CTG3_1
chr19_KV575258v1_alt 156,965   NW_016107312.1, KV575258.1, HSCHR19KIR_HG2393_CTG3_1
chr19_KV575259v1_alt 171,263   NW_016107313.1, KV575259.1, HSCHR19KIR_7191059-2_CTG3_1
chr19_KV575260v1_alt 145,691   NW_016107314.1, KV575260.1, HSCHR19KIR_HG2396_CTG3_1
chr20_GL383577v2_alt 128,386   NW_003315966.2, HSCHR20_1_CTG1, GL383577.2
chr20_KI270869v1_alt 118,774   NT_187623.1, KI270869.1, HSCHR20_1_CTG2
chr20_KI270870v1_alt 183,433   NT_187624.1, KI270870.1, HSCHR20_1_CTG3
chr20_KI270871v1_alt 58,661   NT_187625.1, KI270871.1, HSCHR20_1_CTG4
chr21_GL383578v2_alt 63,917   NW_003315967.2, HSCHR21_1_CTG1_1, GL383578.2
chr21_GL383579v2_alt 201,197   NW_003315968.2, HSCHR21_2_CTG1_1, GL383579.2
chr21_GL383580v2_alt 74,653   NW_003315969.2, HSCHR21_3_CTG1_1, GL383580.2
chr21_GL383581v2_alt 116,689   NW_003315970.2, HSCHR21_4_CTG1_1, GL383581.2
chr21_KI270872v1_alt 82,692   NT_187626.1, KI270872.1, HSCHR21_5_CTG2
chr21_KI270873v1_alt 143,900   NT_187627.1, KI270873.1, HSCHR21_6_CTG1_1
chr21_KI270874v1_alt 166,743   NT_187628.1, KI270874.1, HSCHR21_8_CTG1_1
chr22_GL383582v2_alt 162,811   NW_003315971.2, HSCHR22_1_CTG1, GL383582.2
chr22_GL383583v2_alt 96,924   NW_003315972.2, HSCHR22_1_CTG2, GL383583.2
chr22_KB663609v1_alt 74,013   NW_004504305.1, KB663609.1, HSCHR22_2_CTG1
chr22_KI270875v1_alt 259,914   NT_187629.1, KI270875.1, HSCHR22_1_CTG3
chr22_KI270876v1_alt 263,666   NT_187630.1, KI270876.1, HSCHR22_1_CTG4
chr22_KI270877v1_alt 101,331   NT_187631.1, KI270877.1, HSCHR22_1_CTG5
chr22_KI270878v1_alt 186,262   NT_187632.1, KI270878.1, HSCHR22_1_CTG6
chr22_KI270879v1_alt 304,135   NT_187633.1, KI270879.1, HSCHR22_1_CTG7
chr22_KI270928v1_alt 176,103   NT_187682.1, KI270928.1, HSCHR22_3_CTG1
chr22_KN196485v1_alt 156,562   NW_009646207.1, KN196485.1, HSCHR22_4_CTG1
chr22_KN196486v1_alt 153,027   NW_009646208.1, KN196486.1, HSCHR22_5_CTG1
chr22_KQ458387v1_alt 155,930   NW_014040930.1, KQ458387.1, HSCHR22_6_CTG1
chr22_KQ458388v1_alt 174,749   NW_014040931.1, KQ458388.1, HSCHR22_7_CTG1
chr22_KQ759761v1_alt 145,162   NW_015148968.1, KQ759761.1, HSCHR22_8_CTG1
chr22_KQ759762v1_fix 101,037   NW_015148969.1, KQ759762.1, HG1311_PATCH
chr22_KI270731v1_random 150,754   NT_187386.1, KI270731.1, HSCHR22_UNLOCALIZED_CTG1
chr22_KI270732v1_random 41,543   NT_187387.1, KI270732.1, HSCHR22_UNLOCALIZED_CTG2
chr22_KI270733v1_random 179,772   NT_187388.1, KI270733.1, HSCHR22_UNLOCALIZED_CTG3
chr22_KI270734v1_random 165,050   NT_187389.1, KI270734.1, HSCHR22_UNLOCALIZED_CTG4
chr22_KI270735v1_random 42,811   NT_187390.1, KI270735.1, HSCHR22_UNLOCALIZED_CTG5
chr22_KI270736v1_random 181,920   NT_187391.1, KI270736.1, HSCHR22_UNLOCALIZED_CTG6
chr22_KI270737v1_random 103,838   NT_187392.1, KI270737.1, HSCHR22_UNLOCALIZED_CTG7
chr22_KI270738v1_random 99,375   NT_187393.1, KI270738.1, HSCHR22_UNLOCALIZED_CTG8
chr22_KI270739v1_random 73,985   NT_187394.1, KI270739.1, HSCHR22_UNLOCALIZED_CTG9
chrX_KI270880v1_alt 284,869   NT_187634.1, KI270880.1, HSCHRX_1_CTG3
chrX_KI270881v1_alt 144,206   NT_187635.1, KI270881.1, HSCHRX_2_CTG12
chrX_KI270913v1_alt 274,009   NT_187667.1, KI270913.1, HSCHRX_2_CTG3
chrX_KV766199v1_alt 188,004   NW_017363820.1, KV766199.1, HSCHRX_3_CTG7
chrY_KI270740v1_random 37,240   NT_187395.1, KI270740.1, HSCHRY_RANDOM_CTG1
chrY_KN196487v1_fix 101,150   NW_009646209.1, KN196487.1, HG2062_PATCH
chrY_KZ208923v1_fix 48,370   NW_018654725.1, KZ208923.1, HG1531_PATCH
chrY_KZ208924v1_fix 209,722   NW_018654726.1, KZ208924.1, HG1535_PATCH
chrUn_GL000195v1 182,896   NT_113901.1, HSCHRUN_RANDOM_CTG1, GL000195.1
chrUn_GL000213v1 164,239   NT_167208.1, HSCHRUN_RANDOM_CTG2, GL000213.1
chrUn_GL000214v1 137,718   NT_167209.1, HSCHRUN_RANDOM_CTG4, GL000214.1
chrUn_GL000216v2 176,608   NT_167211.2, HSCHRUN_RANDOM_CTG6, GL000216.2
chrUn_GL000218v1 161,147   NT_113889.1, HSCHRUN_RANDOM_CTG9, GL000218.1
chrUn_GL000219v1 179,198   NT_167213.1, HSCHRUN_RANDOM_CTG10, GL000219.1
chrUn_GL000220v1 161,802   NT_167214.1, HSCHRUN_RANDOM_CTG11, GL000220.1
chrUn_GL000224v1 179,693   NT_167218.1, HSCHRUN_RANDOM_CTG16, GL000224.1
chrUn_GL000226v1 15,008   NT_167220.1, HSCHRUN_RANDOM_CTG19, GL000226.1
chrUn_KI270302v1 2,274   NT_187396.1, KI270302.1, HSCHRUN_RANDOM_100
chrUn_KI270303v1 1,942   NT_187398.1, KI270303.1, HSCHRUN_RANDOM_102
chrUn_KI270304v1 2,165   NT_187397.1, KI270304.1, HSCHRUN_RANDOM_101
chrUn_KI270305v1 1,472   NT_187399.1, KI270305.1, HSCHRUN_RANDOM_103
chrUn_KI270310v1 1,201   NT_187402.1, KI270310.1, HSCHRUN_RANDOM_106
chrUn_KI270311v1 12,399   NT_187406.1, KI270311.1, HSCHRUN_RANDOM_110
chrUn_KI270312v1 998   NT_187405.1, KI270312.1, HSCHRUN_RANDOM_109
chrUn_KI270315v1 2,276   NT_187404.1, KI270315.1, HSCHRUN_RANDOM_108
chrUn_KI270316v1 1,444   NT_187403.1, KI270316.1, HSCHRUN_RANDOM_107
chrUn_KI270317v1 37,690   NT_187407.1, KI270317.1, HSCHRUN_RANDOM_111
chrUn_KI270320v1 4,416   NT_187401.1, KI270320.1, HSCHRUN_RANDOM_105
chrUn_KI270322v1 21,476   NT_187400.1, KI270322.1, HSCHRUN_RANDOM_104
chrUn_KI270329v1 1,040   NT_187459.1, KI270329.1, HSCHRUN_RANDOM_167
chrUn_KI270330v1 1,652   NT_187458.1, KI270330.1, HSCHRUN_RANDOM_166
chrUn_KI270333v1 2,699   NT_187461.1, KI270333.1, HSCHRUN_RANDOM_169
chrUn_KI270334v1 1,368   NT_187460.1, KI270334.1, HSCHRUN_RANDOM_168
chrUn_KI270335v1 1,048   NT_187462.1, KI270335.1, HSCHRUN_RANDOM_170
chrUn_KI270336v1 1,026   NT_187465.1, KI270336.1, HSCHRUN_RANDOM_173
chrUn_KI270337v1 1,121   NT_187466.1, KI270337.1, HSCHRUN_RANDOM_174
chrUn_KI270338v1 1,428   NT_187463.1, KI270338.1, HSCHRUN_RANDOM_171
chrUn_KI270340v1 1,428   NT_187464.1, KI270340.1, HSCHRUN_RANDOM_172
chrUn_KI270362v1 3,530   NT_187469.1, KI270362.1, HSCHRUN_RANDOM_177
chrUn_KI270363v1 1,803   NT_187467.1, KI270363.1, HSCHRUN_RANDOM_175
chrUn_KI270364v1 2,855   NT_187468.1, KI270364.1, HSCHRUN_RANDOM_176
chrUn_KI270366v1 8,320   NT_187470.1, KI270366.1, HSCHRUN_RANDOM_178
chrUn_KI270371v1 2,805   NT_187494.1, KI270371.1, HSCHRUN_RANDOM_202
chrUn_KI270372v1 1,650   NT_187491.1, KI270372.1, HSCHRUN_RANDOM_199
chrUn_KI270373v1 1,451   NT_187492.1, KI270373.1, HSCHRUN_RANDOM_200
chrUn_KI270374v1 2,656   NT_187490.1, KI270374.1, HSCHRUN_RANDOM_198
chrUn_KI270375v1 2,378   NT_187493.1, KI270375.1, HSCHRUN_RANDOM_201
chrUn_KI270376v1 1,136   NT_187489.1, KI270376.1, HSCHRUN_RANDOM_197
chrUn_KI270378v1 1,048   NT_187471.1, KI270378.1, HSCHRUN_RANDOM_179
chrUn_KI270379v1 1,045   NT_187472.1, KI270379.1, HSCHRUN_RANDOM_180
chrUn_KI270381v1 1,930   NT_187486.1, KI270381.1, HSCHRUN_RANDOM_194
chrUn_KI270382v1 4,215   NT_187488.1, KI270382.1, HSCHRUN_RANDOM_196
chrUn_KI270383v1 1,750   NT_187482.1, KI270383.1, HSCHRUN_RANDOM_190
chrUn_KI270384v1 1,658   NT_187484.1, KI270384.1, HSCHRUN_RANDOM_192
chrUn_KI270385v1 990   NT_187487.1, KI270385.1, HSCHRUN_RANDOM_195
chrUn_KI270386v1 1,788   NT_187480.1, KI270386.1, HSCHRUN_RANDOM_188
chrUn_KI270387v1 1,537   NT_187475.1, KI270387.1, HSCHRUN_RANDOM_183
chrUn_KI270388v1 1,216   NT_187478.1, KI270388.1, HSCHRUN_RANDOM_186
chrUn_KI270389v1 1,298   NT_187473.1, KI270389.1, HSCHRUN_RANDOM_181
chrUn_KI270390v1 2,387   NT_187474.1, KI270390.1, HSCHRUN_RANDOM_182
chrUn_KI270391v1 1,484   NT_187481.1, KI270391.1, HSCHRUN_RANDOM_189
chrUn_KI270392v1 971   NT_187485.1, KI270392.1, HSCHRUN_RANDOM_193
chrUn_KI270393v1 1,308   NT_187483.1, KI270393.1, HSCHRUN_RANDOM_191
chrUn_KI270394v1 970   NT_187479.1, KI270394.1, HSCHRUN_RANDOM_187
chrUn_KI270395v1 1,143   NT_187476.1, KI270395.1, HSCHRUN_RANDOM_184
chrUn_KI270396v1 1,880   NT_187477.1, KI270396.1, HSCHRUN_RANDOM_185
chrUn_KI270411v1 2,646   NT_187409.1, KI270411.1, HSCHRUN_RANDOM_113
chrUn_KI270412v1 1,179   NT_187408.1, KI270412.1, HSCHRUN_RANDOM_112
chrUn_KI270414v1 2,489   NT_187410.1, KI270414.1, HSCHRUN_RANDOM_114
chrUn_KI270417v1 2,043   NT_187415.1, KI270417.1, HSCHRUN_RANDOM_119
chrUn_KI270418v1 2,145   NT_187412.1, KI270418.1, HSCHRUN_RANDOM_116
chrUn_KI270419v1 1,029   NT_187411.1, KI270419.1, HSCHRUN_RANDOM_115
chrUn_KI270420v1 2,321   NT_187413.1, KI270420.1, HSCHRUN_RANDOM_117
chrUn_KI270422v1 1,445   NT_187416.1, KI270422.1, HSCHRUN_RANDOM_120
chrUn_KI270423v1 981   NT_187417.1, KI270423.1, HSCHRUN_RANDOM_121
chrUn_KI270424v1 2,140   NT_187414.1, KI270424.1, HSCHRUN_RANDOM_118
chrUn_KI270425v1 1,884   NT_187418.1, KI270425.1, HSCHRUN_RANDOM_122
chrUn_KI270429v1 1,361   NT_187419.1, KI270429.1, HSCHRUN_RANDOM_123
chrUn_KI270435v1 92,983   NT_187424.1, KI270435.1, HSCHRUN_RANDOM_128
chrUn_KI270438v1 112,505   NT_187425.1, KI270438.1, HSCHRUN_RANDOM_129
chrUn_KI270442v1 392,061   NT_187420.1, KI270442.1, HSCHRUN_RANDOM_124
chrUn_KI270448v1 7,992   NT_187495.1, KI270448.1, HSCHRUN_RANDOM_203
chrUn_KI270465v1 1,774   NT_187422.1, KI270465.1, HSCHRUN_RANDOM_126
chrUn_KI270466v1 1,233   NT_187421.1, KI270466.1, HSCHRUN_RANDOM_125
chrUn_KI270467v1 3,920   NT_187423.1, KI270467.1, HSCHRUN_RANDOM_127
chrUn_KI270468v1 4,055   NT_187426.1, KI270468.1, HSCHRUN_RANDOM_130
chrUn_KI270507v1 5,353   NT_187437.1, KI270507.1, HSCHRUN_RANDOM_141
chrUn_KI270508v1 1,951   NT_187430.1, KI270508.1, HSCHRUN_RANDOM_134
chrUn_KI270509v1 2,318   NT_187428.1, KI270509.1, HSCHRUN_RANDOM_132
chrUn_KI270510v1 2,415   NT_187427.1, KI270510.1, HSCHRUN_RANDOM_131
chrUn_KI270511v1 8,127   NT_187435.1, KI270511.1, HSCHRUN_RANDOM_139
chrUn_KI270512v1 22,689   NT_187432.1, KI270512.1, HSCHRUN_RANDOM_136
chrUn_KI270515v1 6,361   NT_187436.1, KI270515.1, HSCHRUN_RANDOM_140
chrUn_KI270516v1 1,300   NT_187431.1, KI270516.1, HSCHRUN_RANDOM_135
chrUn_KI270517v1 3,253   NT_187438.1, KI270517.1, HSCHRUN_RANDOM_142
chrUn_KI270518v1 2,186   NT_187429.1, KI270518.1, HSCHRUN_RANDOM_133
chrUn_KI270519v1 138,126   NT_187433.1, KI270519.1, HSCHRUN_RANDOM_137
chrUn_KI270521v1 7,642   NT_187496.1, KI270521.1, HSCHRUN_RANDOM_204
chrUn_KI270522v1 5,674   NT_187434.1, KI270522.1, HSCHRUN_RANDOM_138
chrUn_KI270528v1 2,983   NT_187440.1, KI270528.1, HSCHRUN_RANDOM_144
chrUn_KI270529v1 1,899   NT_187439.1, KI270529.1, HSCHRUN_RANDOM_143
chrUn_KI270530v1 2,168   NT_187441.1, KI270530.1, HSCHRUN_RANDOM_145
chrUn_KI270538v1 91,309   NT_187443.1, KI270538.1, HSCHRUN_RANDOM_147
chrUn_KI270539v1 993   NT_187442.1, KI270539.1, HSCHRUN_RANDOM_146
chrUn_KI270544v1 1,202   NT_187444.1, KI270544.1, HSCHRUN_RANDOM_148
chrUn_KI270548v1 1,599   NT_187445.1, KI270548.1, HSCHRUN_RANDOM_149
chrUn_KI270579v1 31,033   NT_187450.1, KI270579.1, HSCHRUN_RANDOM_158
chrUn_KI270580v1 1,553   NT_187448.1, KI270580.1, HSCHRUN_RANDOM_156
chrUn_KI270581v1 7,046   NT_187449.1, KI270581.1, HSCHRUN_RANDOM_157
chrUn_KI270582v1 6,504   NT_187454.1, KI270582.1, HSCHRUN_RANDOM_162
chrUn_KI270583v1 1,400   NT_187446.1, KI270583.1, HSCHRUN_RANDOM_154
chrUn_KI270584v1 4,513   NT_187453.1, KI270584.1, HSCHRUN_RANDOM_161
chrUn_KI270587v1 2,969   NT_187447.1, KI270587.1, HSCHRUN_RANDOM_155
chrUn_KI270588v1 6,158   NT_187455.1, KI270588.1, HSCHRUN_RANDOM_163
chrUn_KI270589v1 44,474   NT_187451.1, KI270589.1, HSCHRUN_RANDOM_159
chrUn_KI270590v1 4,685   NT_187452.1, KI270590.1, HSCHRUN_RANDOM_160
chrUn_KI270591v1 5,796   NT_187457.1, KI270591.1, HSCHRUN_RANDOM_165
chrUn_KI270593v1 3,041   NT_187456.1, KI270593.1, HSCHRUN_RANDOM_164
chrUn_KI270741v1 157,432   NT_187497.1, KI270741.1, HSCHRUN_RANDOM_CTG17
chrUn_KI270742v1 186,739   NT_187513.1, KI270742.1, HSCHRUN_RANDOM_CTG42
chrUn_KI270743v1 210,658   NT_187498.1, KI270743.1, HSCHRUN_RANDOM_CTG20
chrUn_KI270744v1 168,472   NT_187499.1, KI270744.1, HSCHRUN_RANDOM_CTG21
chrUn_KI270745v1 41,891   NT_187500.1, KI270745.1, HSCHRUN_RANDOM_CTG22
chrUn_KI270746v1 66,486   NT_187501.1, KI270746.1, HSCHRUN_RANDOM_CTG23
chrUn_KI270747v1 198,735   NT_187502.1, KI270747.1, HSCHRUN_RANDOM_CTG24
chrUn_KI270748v1 93,321   NT_187503.1, KI270748.1, HSCHRUN_RANDOM_CTG25
chrUn_KI270749v1 158,759   NT_187504.1, KI270749.1, HSCHRUN_RANDOM_CTG26
chrUn_KI270750v1 148,850   NT_187505.1, KI270750.1, HSCHRUN_RANDOM_CTG27
chrUn_KI270751v1 150,742   NT_187506.1, KI270751.1, HSCHRUN_RANDOM_CTG28
chrUn_KI270752v1 27,745   KI270752.1, HSCHRUN_RANDOM_CTG29
chrUn_KI270753v1 62,944   NT_187508.1, KI270753.1, HSCHRUN_RANDOM_CTG30
chrUn_KI270754v1 40,191   NT_187509.1, KI270754.1, HSCHRUN_RANDOM_CTG33
chrUn_KI270755v1 36,723   NT_187510.1, KI270755.1, HSCHRUN_RANDOM_CTG34
chrUn_KI270756v1 79,590   NT_187511.1, KI270756.1, HSCHRUN_RANDOM_CTG35
chrUn_KI270757v1 71,251   NT_187512.1, KI270757.1, HSCHRUN_RANDOM_CTG36
Total: 595 3,257,347,282    
Download as file: hg38.chrom.sizes hg38.chromAlias.txt

Human Genome Browser – hg38 assembly (sequences)
 
Human
Homo sapiens
(Graphic courtesy of CBSE)

UCSC Genome Browser assembly ID: hg38
Sequencing/Assembly provider ID: Genome Reference Consortium Human GRCh38.p12 (GCA_000001405.27)
Assembly date: Dec. 2013 initial release; Dec. 2017 patch release 12
Assembly accession: GCA_000001405.27
NCBI Genome ID: 51 (Homo sapiens (human))
NCBI Assembly ID: 5800238 (GRCh38.p12, GCA_000001405.27)
BioProject ID: PRJNA31257


Search the assembly:

  • By position or search term: Use the "position or search term" box to find areas of the genome associated with many different attributes, such as a specific chromosomal coordinate range; mRNA, EST, or STS marker names; or keywords from the GenBank description of an mRNA. More information, including sample queries.
  • By gene name: Type a gene name into the "search term" box, choose your gene from the drop-down list, then press "submit" to go directly to the assembly location associated with that gene. More information.
  • By track type: Click the "track search" button to find Genome Browser tracks that match specific selection criteria. More information.


Download sequence and annotation data:


Assembly Details

The GRCh38 assembly is the first major revision of the human genome released in more than four years. As with the previous GRCh37 assembly, the Genome Reference Consortium (GRC) is now the primary source for human genome assembly data submitted to GenBank. Beginning with this release, the UCSC Genome Browser version numbers for the human assemblies now match those of the GRC to minimize version confusion. Hence, the GRCh38 assembly is referred to as "hg38" in the Genome Browser datasets and documentation. For a glossary of assembly-related terms, see the GRC Assembly Terminology page.

GRCh38 Highlights

  • Alternate sequences - Several human chromosomal regions exhibit sufficient variability to prevent adequate representation by a single sequence. To address this, the GRCh38 assembly provides alternate sequence for selected variant regions through the inclusion of alternate loci scaffolds (or alt loci). Alt loci are separate accessioned sequences that are aligned to reference chromosomes. The GRCh38 initial assembly contained 261 alt loci, many of which are associated with the LRC/KIR area of chr19 and the MHC region on chr6. Subsequent GRC patch releases have added additional alt loci and fix patches. See the sequences page for the latest list of the reference chromosomes, alternate, and patch sequences in GRCh38.
  • Fix sequences - Fix patches denoted by chr__fix represent changes to the existing sequence. These are generally error corrections (such as base changes, component replacements/updates, switch point updates or tiling path changes) or assembly improvements (such as extension of sequence into gaps). These fix patch scaffold sequences are given chromosome context through alignments to the corresponding chromosome regions. A list of all chromosomes including chr_fix sequences can be found in the sequences page.
  • Centromere representation - Debuting in this release, the large megabase-sized gaps that represented centromeric regions in previous assemblies have been replaced by sequences from centromere models created by Karen Miga et al., using centromere databases developed during her work in the Willard lab at Duke University (now at the University of Chicago) and analysis software developed while working in the Kent lab at UCSC. The models, which provide the approximate repeat number and order for each centromere, will be useful for read mapping and variation studies.
  • Mitochondrial genome - The mitochondrial reference sequence included in the GRCh38 assembly (termed "chrM" in the UCSC Genome Browser) is the Revised Cambridge Reference Sequence (rCRS) from MITOMAP with GenBank accession number J01415.2 and RefSeq accession number NC_012920.1. This differs from the chrM sequence (RefSeq accession number NC_001807) provided by the Genome Browser for hg19, which was not updated when the GRCh37 assembly later transitioned to the new version.
  • Sequence updates - Several erroneous bases and misassembled regions in GRCh37 have been corrected in the GRCh38 assembly, and more than 100 gaps have been filled or reduced. Much of the data used to improve the reference sequence was obtained from other genome sequencing and analysis projects, such as the 1000 Genomes Project.
  • Analysis set - The GRCh38 assembly offers an "analysis set" that was created to accommodate next generation sequencing read alignment pipelines. To avoid false mapping of reads, duplicate copies of centromeric arrays and WGS on several chromosomes have been hard-masked with Ns. The two PAR regions on chromosome Y have also been hard-masked, and the Epstein-Barr virus sequence has been added as a decoy to attract contamination in samples. Two versions of the analysis set are available on our downloads page: one without the alternate chromosomes from this assembly, and one that includes them.

Chromosome naming conventions
UCSC has introduced some slight changes to the Genome Browser chromosome naming scheme with this release:

  • Haplotype chromosome, unplaced contig and unlocalized contig names now include their NCBI accession number (e.g., chr6_GL000256v2_alt)
  • The "v2" at the end of the accession number indicates the NCBI version number
  • Haplotype chromosome names consist of the chromosome number, followed by the NCBI accession number, followed by "alt"
  • Fix sequence names consist of the chromosomes number, followed by the NCBI accession number, followed by "fix" (e.g., chr7_KQ031388v1_fix)
  • Unlocalized contig names consist of the chromosome number, followed by the NCBI accession number, followed by "random"
  • Unplaced contig names (contigs whose associated chromosome is not known) consist of "chrUn" followed by the NCBI accession number

Pseudoautosomal regions
The Y chromosome in this assembly contains two pseudoautosomal regions (PARs) that were taken from the corresponding regions in the X chromosome and are exact duplicates:

chrY:10,000-2,781,479 and chrY:56,887,902-57,217,415
chrX:10,000-2,781,479 and chrX:155,701,382-156,030,895

Assembly statistics
For a detailed set of statistics about this assembly, see the GRCh38 GenBank record.

NumberHaplotypesFixesUnplaced Contigs
chr11989
chr21832
chr32171
chr41611
chr51611
chr61750
chr71140
chr81740
chr9714
chr10550
chr111561
chr121660
chr13840
chr14518
chr151011
chr161021
chr172123
chr181230
chr195820
chr20400
chr21700
chr221419
chrX400
chrY031
chrM000

TypeTotal
chromosomes25
haplotypes331
fixes70
unlocalized contigs42
unplaced contigs127
Total595

For more information about the files included in the GRCh38 GenBank submission, see the GRCh38 README. Bulk downloads of the sequence and annotation data may be obtained from the Genome Browser FTP server or the Downloads page. The annotation tracks for this browser were generated by UCSC and collaborators worldwide.

References

Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ. Centromere reference models for human chromosomes X and Y satellite arrays. Genome Res. 2014 Apr;24(4):697-707. Epub 2014 Feb 5.