UCSC Genome Browser on SARS-CoV-2 Jan. 2020/NC_045512.2 Assembly (wuhCor1)
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NC_045512v2:15,555-18,134 2,580 bp.
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Age 0-19
Age 20-39
Age 40-59
Age 60+
Female
Male
Month 1
Month 2
StrictVICall
VICall
-   Mapping and Sequencing
Base Position
Kim IVT Cov
ARTIC Primers
new RAPID Primers
Crowd-Sourced Data
Cas13 CRISPR
Addgene Plasmids
Assembly
CRISPR Detection
Gap
GC Percent
INSDC
new Problematic Sites
RefSeq Acc
Restr Enzymes
RT-PCR Primers
Short Match
-   Genes and Gene Predictions
NCBI Genes
NCBI Proteins
Transcriptome
Protein Interact.
new Weizman ORFs...
PDB Structures
new PDB Ligand Contacts
AUGUSTUS
Genscan Genes
Nextstrain Genes
new PhyloCSF Genes
Rangan RNA
Rfam
UniProt
-   UniProt Protein Annotations
Full Proteins
Protein Products
Highlights
Signal Peptides
Transmem. Domains
Disulf. Bonds
Protein Domains
Glycosyl/Phosph.
Other Annot.
Structure
Repeats
Protease Cleavage
-   Immunology
new RBD Antibody Escape
new RBD Mut Bind
new RBD Mut Expr
CD8 RosettaMHC
IEDB Predictions
Poran HLA I
Poran HLA II
T-React. Epitopes
new Validated epitopes from IEDB
-   mRNA and EST
new icSHAPE RNA Struct
-   Expression and Regulation
Kim Transcripts
Kim RNA Brkpts
Kim RNA Modifific.
CpG Islands...
-   Comparative Genomics
44 Bat CoVs
119 Vertebrate CoVs
new PhyloCSF...
new Human CoV
-   Variation and Repeats
new Phylogeny: Public
Phylogeny: GISAID
updated Nextstrain Clades
updated Nextstrn Old Clades
updated Nextstrain Variants
new Natural Selection
new Microdeletions
updated Nextstrain Frequency
updated Nextstrain Parsimony
new Pot. pathogenic indels
Simple Repeats
WM + SDust

GISAID data displayed in the Genome Browser are subject to GISAID's Terms and Conditions. SARS-CoV-2 genome sequences and metadata are available for download from GISAID EpiCoV™.