UCSC Genome Browser on Ambystoma mexicanum Assembly, June 2018 Assembly (Amex_PQ.v4)
move zoom in zoom out
chr1P:270,923,278-270,932,588 9,311 bp.
move start
  Click on a feature for details. Click or drag in the base position track to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts.   move end
  
Use drop-down controls below and press refresh to alter tracks displayed.
Tracks with lots of items will automatically be displayed in more compact modes.
-   Gene_Models
GeneModels
-   Track Collections
ATT state @ het
Homozygous
ATT state @ hom
Heterozygous
Colony coverage
ATT coverage
Regeneration
Gonad
-   Nowosh_assembly
Scaffolds
Gaps
-   Mapping and Sequencing
Base Position
Restr Enzymes
Short Match
-   Transcriptome_alignments
Nowoshilow_trans
sal-site_trans
Bryant_trans
-   RNAseq PRJNA300706 (regeneration map, Broad Institute, Bryant)
Bryant_Bone_255
Bryant_blood_vessel_904
Bryant_blood_vessel_905
Bryant_blood_vessel_906
Bryant_Bone_256
Bryant_Bone_257
Bryant_CartLong_258
Bryant_CartLong_259
Bryant_CartLong_260
Bryant_CartWrist_261
Bryant_CartWrist_262
Bryant_CartWrist_263
Bryant_distal_1
Bryant_distal_2
Bryant_elbow_10325
Bryant_elbow_10328
Bryant_forearm_10321
Bryant_forearm_10324
Bryant_gillfilament_10319
Bryant_hand_10320
Bryant_hand_10323
Bryant_hand_10327
Bryant_heart_907
Bryant_heart_908
Bryant_heart_909
Bryant_Ovaries_218
Bryant_Ovaries_219
Bryant_Ovaries_220
Bryant_proximal_1
Bryant_proximal_2
Bryant_skeletal_900
Bryant_skeletal_901
Bryant_skeletal_902
Bryant_skeletal_903
Bryant_Testes_250
Bryant_Testes_251
Bryant_Testes_253
Bryant_Testes_254
Bryant_upperarm_10322
Bryant_upperarm_10326
Bryant_upperarm_10329
-   RNAseq PRJNA480225 (limb regeneration, University of Kentucky, Dwaraka)
Dwaraka_RegenD1_rep1
Dwaraka_RegenD1_rep2
Dwaraka_RegenD1_rep3
Dwaraka_RegenD2_rep1
Dwaraka_RegenD2_rep2
Dwaraka_RegenD2_rep3
Dwaraka_RegenD3_rep1
Dwaraka_RegenD3_rep2
Dwaraka_RegenD3_rep3
Dwaraka_RegenD4_rep1
Dwaraka_RegenD4_rep2
Dwaraka_RegenD4_rep3
Dwaraka_RegenD5_rep1
Dwaraka_RegenD5_rep2
Dwaraka_RegenD5_rep3
Dwaraka_uninjured_rep1
Dwaraka_uninjured_rep2
Dwaraka_uninjured_rep3
-   RNAseq PRJNA378982 (Institute of Molecular Pathology, Nowoshilow)
Nowoshilow_brain
Nowoshilow_CellCult_n
Nowoshilow_CellCult_o
Nowoshilow_flimb_blastema15dpa
Nowoshilow_flimb_blastema9dpa
Nowoshilow_head
Nowoshilow_heart
Nowoshilow_injured_sp_cord1dpa
Nowoshilow_injured_sp_cord6dpa
Nowoshilow_islets
Nowoshilow_limb_bud
Nowoshilow_liver
Nowoshilow_lung
Nowoshilow_ovary_B
Nowoshilow_spinalcord
Nowoshilow_spleen
Nowoshilow_tail_bud
Nowoshilow_tailblastema8dpa
Nowoshilow_testes
Nowoshilow_w_embryo_St10
Nowoshilow_w_embryo_St19
-   RNAseq PRJNA354434 (Langebio-Cinvestav)
Langebio_front_leg
Langebio_gill
Langebio_heart
Langebio_liver
Langebio_rear_leg
Langebio_tail
-   Nanopore RNA long reads
Nanopore_RNA_tailfin
-   WG_reads_alignment
48hybrids_1kb_mean_norm55
48hybrids_chr1
48hybrids_chr2
48hybrids_chr4
48hybrids_chr7
AGCS_1kb_mean_norm20
AGSC_WG_coverage
AM_repeats
Amex_DD151_1kb_mean_norm7
Amex_DD151_cov
A.tigrinum coverage
ATT_mean1kb_norm7
-   SNPs density per kb
A.tig_as_AGSC_AGSC_homoz
A.tig_as_AGSC_at_AGSC_het
A.tig_as_dd_at_AGSC_het
A.tig_as_dd_at_AGSC_homoz
het_A.tig
het_AGSC
het_dd
homoz_A.tig
homoz_AGSC
homoz_dd
-   SEQUENCE VARIANTS (SNPs and small indels)
A.tig_SNPs
AGSC_SNPs
dd_SNPs
-   Epigenetics tracks (Please visit Sal-Site for guidance on fair use of these pre-publication datasets)
12Hr_WGBS
24Hr_WGBS
H3K27ac
H3K27ac_reconstruct
H3K9ac
RNA_PolII
uninj_WGBS
-   other
AM_homoz_SNPs_10K
H3K27ac peaks
H3K27ac_pileup.bigWig
H3K9ac peaks
RNA_PolII peaks
AM_heter_SNPs_10K
H3K9ac_pileup.bigWig
AM_homoz_SNPs_10M
RNA_PolII_pileup.bigWig
ATT_homoz_SNPs_10K
ATT_heter_SNPs_10K
Tanaka_homoz_SNPs_10K
Tanaka_heter_SNPs_10K
AM_0/1_ATT_0/0 SNPs10K
AM_0/1_ATT_1/1 SNPs10K
AM_1/1_ATT_0/0 SNPs10K
AM_1/1_ATT_1/1 SNPs10K
ATT_1/1 Tan 1/1 SNPs10K
ATT_0/1 Tan 0/1 SNPs10K
AM_0/1 Tan 0/1 SNPs10K
AM_1/1 Tan 1/1 SNPs10K