UCSC Genome Browser on SARS-CoV-2 Jan. 2020/NC_045512.2 Assembly (wuhCor1)
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NC_045512v2:25,183-28,377 3,195 bp.
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MEA Seccondary Structures Rangan Das 2020 with Pubmed and Rfam annotations
TRS (CUAAAC) [+purple/-teal]
TRS (CUAAAC) [+purple/-teal] - TRS COMPLEMENT (GUUUAG) [+mustard]
-   Mapping and Sequencing
Base Position
Kim IVT Cov
ARTIC Primers
new RAPID Primers
Crowd-Sourced Data
Addgene Plasmids
CRISPR Detection
GC Percent
new Problematic Sites
RefSeq Acc
Restr Enzymes
RT-PCR Primers
Short Match
Blat Sequence
-   Genes and Gene Predictions
NCBI Genes
NCBI Proteins
Protein Interact.
new Weizman ORFs...
PDB Structures
new PDB Ligand Contacts
Genscan Genes
Nextstrain Genes
new PhyloCSF Genes
Rangan RNA
-   UniProt Protein Annotations
Full Proteins
Protein Products
Signal Peptides
Transmem. Domains
Disulf. Bonds
Protein Domains
Other Annot.
Protease Cleavage
-   Immunology
new RBD Antibody Escape
new RBD Mut Bind
new RBD Mut Expr
CD8 RosettaMHC
IEDB Predictions
Poran HLA I
Poran HLA II
T-React. Epitopes
new Validated epitopes from IEDB
-   mRNA and EST
new icSHAPE RNA Struct
-   Expression and Regulation
Kim Transcripts
Kim RNA Brkpts
Kim RNA Modifific.
CpG Islands...
-   Comparative Genomics
44 Bat CoVs
119 Vertebrate CoVs
new PhyloCSF...
new Human CoV
-   Variation and Repeats
new Phylogeny: Public
Phylogeny: GISAID
updated Nextstrain Clades
updated Nextstrn Old Clades
updated Nextstrain Variants
new Natural Selection
new Microdeletions
updated Nextstrain Frequency
updated Nextstrain Parsimony
new Pot. pathogenic indels
Simple Repeats
WM + SDust

GISAID data displayed in the Genome Browser are subject to GISAID's Terms and Conditions. SARS-CoV-2 genome sequences and metadata are available for download from GISAID EpiCoV™.