Human Gene MPV17 (uc002rjs.3)
  Description: Homo sapiens MpV17 mitochondrial inner membrane protein (MPV17), nuclear gene encoding mitochondrial protein, mRNA.
RefSeq Summary (NM_002437): This gene encodes a mitochondrial inner membrane protein that is implicated in the metabolism of reactive oxygen species. Mutations in this gene have been associated with the hepatocerebral form of mitochondrial DNA depletion syndrome (MDDS). [provided by RefSeq, Jul 2008].
Transcript (Including UTRs)
   Position: hg19 chr2:27,532,360-27,545,969 Size: 13,610 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr2:27,532,780-27,545,384 Size: 12,605 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersGenetic AssociationsMalaCards
CTDGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein Structure
Other SpeciesGO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviews
Model InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:27,532,360-27,545,969)mRNA (may differ from genome)Protein (176 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
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MGIneXtProtOMIMPubMedReactomeTreefam
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPV17_HUMAN
DESCRIPTION: RecName: Full=Protein Mpv17;
FUNCTION: Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Ubiquitous. Expressed in pancreas, kidney, muscle, liver, lung, placenta, brain and heart.
DISEASE: Defects in MPV17 are the cause of mitochondrial DNA depletion syndrome type 6 (MTDPS6) [MIM:256810]. A disease characterized by infantile onset of progressive liver failure, often leading to death in the first year of life, peripheral neuropathy, corneal scarring, acral ulceration and osteomyelitis leading to autoamputation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections.
SIMILARITY: Belongs to the peroxisomal membrane protein PXMP2/4 family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/MPV17";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MPV17
CDC HuGE Published Literature: MPV17

-  MalaCards Disease Associations
  MalaCards Gene Search: MPV17
Diseases sorted by gene-association score: mitochondrial dna depletion syndrome 6* (1588), mpv17-related hepatocerebral mitochondrial dna depletion syndrome* (600), mitochondrial dna depletion syndrome, hepatocerebral form* (100), nephrotic syndrome (8)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 26.86 RPKM in Adrenal Gland
Total median expression: 584.87 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.5056-0.402 Picture PostScript Text
3' UTR -96.23420-0.229 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007248 - Mpv17_PMP22

Pfam Domains:
PF04117 - Mpv17 / PMP22 family

ModBase Predicted Comparative 3D Structure on P39210
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserGenome BrowserGenome Browser
Gene Details  Gene DetailsGene DetailsGene Details
Gene Sorter  Gene SorterGene SorterGene Sorter
  EnsemblFlyBaseWormBaseSGD
  Protein SequenceProtein SequenceProtein SequenceProtein Sequence
  AlignmentAlignmentAlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003674 molecular_function

Biological Process:
GO:0000002 mitochondrial genome maintenance
GO:0006625 protein targeting to peroxisome
GO:0032836 glomerular basement membrane development
GO:0034614 cellular response to reactive oxygen species
GO:0042592 homeostatic process
GO:0048839 inner ear development
GO:2000377 regulation of reactive oxygen species metabolic process

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0005829 cytosol
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC016289 - Homo sapiens MpV17 mitochondrial inner membrane protein, mRNA (cDNA clone IMAGE:3915941), partial cds.
BC001115 - Homo sapiens MpV17 mitochondrial inner membrane protein, mRNA (cDNA clone MGC:1703 IMAGE:2967261), complete cds.
X76538 - H.sapiens Mpv17 mRNA.
AK093305 - Homo sapiens cDNA FLJ35986 fis, clone TESTI2014254, highly similar to MPV17 PROTEIN.
AX748044 - Sequence 1569 from Patent EP1308459.
JD089410 - Sequence 70434 from Patent EP1572962.
JD369792 - Sequence 350816 from Patent EP1572962.
JD074592 - Sequence 55616 from Patent EP1572962.
JD241753 - Sequence 222777 from Patent EP1572962.
JD244653 - Sequence 225677 from Patent EP1572962.
JD089798 - Sequence 70822 from Patent EP1572962.
DQ892279 - Synthetic construct clone IMAGE:100004909; FLH184810.01X; RZPDo839C02146D MpV17 mitochondrial inner membrane protein (MPV17) gene, encodes complete protein; nuclear gene for mitochondrial product.
KJ891639 - Synthetic construct Homo sapiens clone ccsbBroadEn_01033 MPV17 gene, encodes complete protein.
KR710282 - Synthetic construct Homo sapiens clone CCSBHm_00011055 MPV17 (MPV17) mRNA, encodes complete protein.
KR710283 - Synthetic construct Homo sapiens clone CCSBHm_00011056 MPV17 (MPV17) mRNA, encodes complete protein.
KR710284 - Synthetic construct Homo sapiens clone CCSBHm_00011057 MPV17 (MPV17) mRNA, encodes complete protein.
KR710285 - Synthetic construct Homo sapiens clone CCSBHm_00011060 MPV17 (MPV17) mRNA, encodes complete protein.
DQ895479 - Synthetic construct Homo sapiens clone IMAGE:100009939; FLH184806.01L; RZPDo839C02145D MpV17 mitochondrial inner membrane protein (MPV17) gene, encodes complete protein; nuclear gene for mitochondrial product.
KU178195 - Homo sapiens MpV17 mitochondrial inner membrane protein isoform 1 (MPV17) mRNA, partial cds; nuclear gene for mitochondrial product.
KU178196 - Homo sapiens MpV17 mitochondrial inner membrane protein isoform 2 (MPV17) mRNA, complete cds, alternatively spliced; nuclear gene for mitochondrial product.
KU178197 - Homo sapiens MpV17 mitochondrial inner membrane protein isoform 3 (MPV17) mRNA, partial cds, alternatively spliced; nuclear gene for mitochondrial product.
KU178198 - Homo sapiens MpV17 mitochondrial inner membrane protein isoform 4 (MPV17) mRNA, complete cds, alternatively spliced; nuclear gene for mitochondrial product.
AK123373 - Homo sapiens cDNA FLJ41379 fis, clone BRCAN2010376.
AF088036 - Homo sapiens full length insert cDNA clone ZC27F07.
CU674560 - Synthetic construct Homo sapiens gateway clone IMAGE:100017969 5' read MPV17 mRNA.
AK311549 - Homo sapiens cDNA, FLJ18591.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04146 - Peroxisome

Reactome (by CSHL, EBI, and GO)

Protein P39210 (Reactome details) participates in the following event(s):

R-HSA-9033233 PEX5S,L binds cargo proteins containing PTS1
R-HSA-9033236 PEX5S,L:Cargo binds PEX13:PEX14 of PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Complex)
R-HSA-9033241 Peroxisomal protein import
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: D6W555, MPV17_HUMAN, NM_002437, NP_002428, P39210, Q53SY2, Q96B08
UCSC ID: uc002rjs.3
RefSeq Accession: NM_002437
Protein: P39210 (aka MPV17_HUMAN or MPV1_HUMAN)
CCDS: CCDS1748.1

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene MPV17:
mpv17-mtdep (MPV17-Related Hepatocerebral Mitochondrial DNA Maintenance Defect)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_002437.4
exon count: 8CDS single in 3' UTR: no RNA size: 1051
ORF size: 531CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1262.00frame shift in genome: no % Coverage: 95.81
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.