Human Gene UNC45A (uc002bqg.3)
  Description: Homo sapiens unc-45 homolog A (C. elegans) (UNC45A), transcript variant 2, mRNA.
RefSeq Summary (NM_018671): This gene encodes a regulatory component of the progesterone receptor/heat shock protein 90 chaperoning complex, which functions in the assembly and folding of the progesterone receptor. The encoded protein is thought to be essential for normal cell proliferation, and for the accumulation of myosin during development of muscle cells. [provided by RefSeq, Sep 2018].
Transcript (Including UTRs)
   Position: hg19 chr15:91,478,215-91,497,323 Size: 19,109 Total Exon Count: 20 Strand: +
Coding Region
   Position: hg19 chr15:91,478,555-91,496,946 Size: 18,392 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2013-06-14

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:91,478,215-91,497,323)mRNA (may differ from genome)Protein (944 aa)
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H-INVHGNCHPRDLynxMGIneXtProt
OMIMPubMedTreefamUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UN45A_HUMAN
DESCRIPTION: RecName: Full=Protein unc-45 homolog A; Short=Unc-45A; AltName: Full=GCUNC-45; AltName: Full=Smooth muscle cell-associated protein 1; Short=SMAP-1;
FUNCTION: Acts as co-chaperone for HSP90. Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell. May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen (By similarity).
SUBUNIT: Interacts with PGR isoforms A and B as well as with NR3C1 in the absence of ligand, and with HSP90AB1. Binding to HSP90AB1 involves 2 UNC45A monomers per HSP90AB1 dimer.
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, perinuclear region. Nucleus. Note=Predominant in the perinuclear region. Little protein in the nucleus.
TISSUE SPECIFICITY: Detected in peripheral blood leukocytes, bone marrow, adrenal gland, trachea, spinal cord, thyroid, lymph node and stomach.
SIMILARITY: Contains 3 TPR repeats.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.48 RPKM in Esophagus - Gastroesophageal Junction
Total median expression: 1038.04 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -178.27340-0.524 Picture PostScript Text
3' UTR -150.40377-0.399 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011989 - ARM-like
IPR016024 - ARM-type_fold
IPR023114 - Elongated_TPR_rpt_dom
IPR013026 - TPR-contain_dom
IPR013105 - TPR_2
IPR019734 - TPR_repeat
IPR024660 - UNC-45/Ring3

Pfam Domains:
PF11701 - Myosin-binding striated muscle assembly central
PF13174 - Tetratricopeptide repeat
PF13181 - Tetratricopeptide repeat
PF13432 - Tetratricopeptide repeat

SCOP Domains:
48371 - ARM repeat
81901 - HCP-like
48439 - Protein prenylyltransferase
48452 - TPR-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2DBA - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9H3U1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserGenome BrowserNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
 Protein SequenceProtein Sequence   
 AlignmentAlignment   

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0045296 cadherin binding
GO:0051879 Hsp90 protein binding

Biological Process:
GO:0007275 multicellular organism development
GO:0007517 muscle organ development
GO:0030154 cell differentiation
GO:0061077 chaperone-mediated protein folding

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0016607 nuclear speck
GO:0048471 perinuclear region of cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK125721 - Homo sapiens cDNA FLJ43733 fis, clone TESTI1000545, highly similar to Homo sapiens unc-45 homolog A (UNC45A), transcript variant 3, mRNA.
BC045635 - Homo sapiens unc-45 homolog A (C. elegans), mRNA (cDNA clone MGC:39799 IMAGE:5297091), complete cds.
LF207738 - JP 2014500723-A/15241: Polycomb-Associated Non-Coding RNAs.
AK291622 - Homo sapiens cDNA FLJ77677 complete cds.
AB014729 - Homo sapiens mRNA for SMAP-1, complete cds.
AB014736 - Homo sapiens mRNA for SMAP-1b, complete cds.
BC006214 - Homo sapiens unc-45 homolog A (C. elegans), mRNA (cDNA clone MGC:999 IMAGE:3051384), complete cds.
BC037992 - Homo sapiens unc-45 homolog A (C. elegans), mRNA (cDNA clone MGC:46078 IMAGE:5534906), complete cds.
DQ892953 - Synthetic construct clone IMAGE:100005583; FLH191124.01X; RZPDo839H0976D unc-45 homolog A (C. elegans) (UNC45A) gene, encodes complete protein.
DQ896200 - Synthetic construct Homo sapiens clone IMAGE:100010660; FLH191120.01L; RZPDo839H0966D unc-45 homolog A (C. elegans) (UNC45A) gene, encodes complete protein.
KJ899214 - Synthetic construct Homo sapiens clone ccsbBroadEn_08608 UNC45A gene, encodes complete protein.
BC002620 - Homo sapiens mRNA similar to guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 (cDNA clone IMAGE:3161058).
MA443315 - JP 2018138019-A/15241: Polycomb-Associated Non-Coding RNAs.
JD191601 - Sequence 172625 from Patent EP1572962.
AK302979 - Homo sapiens cDNA FLJ54108 complete cds, highly similar to Homo sapiens smooth muscle cell associated protein-1 (SMAP-1), transcript variant 2, mRNA.
AK296964 - Homo sapiens cDNA FLJ52559 complete cds, highly similar to Homo sapiens unc-45 homolog A (UNC45A), transcript variant 3, mRNA.
AK000905 - Homo sapiens cDNA FLJ10043 fis, clone HEMBA1001085.
AK293538 - Homo sapiens cDNA FLJ59848 complete cds, moderately similar to Homo sapiens smooth muscle cell associated protein-1 (SMAP-1), transcript variant 2, mRNA.
CU691534 - Synthetic construct Homo sapiens gateway clone IMAGE:100021263 5' read UNC45A mRNA.
JD191296 - Sequence 172320 from Patent EP1572962.
JD484588 - Sequence 465612 from Patent EP1572962.
JD463636 - Sequence 444660 from Patent EP1572962.
JD462185 - Sequence 443209 from Patent EP1572962.
LF368499 - JP 2014500723-A/176002: Polycomb-Associated Non-Coding RNAs.
JD140485 - Sequence 121509 from Patent EP1572962.
JD216843 - Sequence 197867 from Patent EP1572962.
LF368497 - JP 2014500723-A/176000: Polycomb-Associated Non-Coding RNAs.
JD439220 - Sequence 420244 from Patent EP1572962.
LF368496 - JP 2014500723-A/175999: Polycomb-Associated Non-Coding RNAs.
JD331561 - Sequence 312585 from Patent EP1572962.
JD470460 - Sequence 451484 from Patent EP1572962.
JD307233 - Sequence 288257 from Patent EP1572962.
JD323188 - Sequence 304212 from Patent EP1572962.
JD275979 - Sequence 257003 from Patent EP1572962.
JD520529 - Sequence 501553 from Patent EP1572962.
JD196205 - Sequence 177229 from Patent EP1572962.
MA604076 - JP 2018138019-A/176002: Polycomb-Associated Non-Coding RNAs.
MA604074 - JP 2018138019-A/176000: Polycomb-Associated Non-Coding RNAs.
MA604073 - JP 2018138019-A/175999: Polycomb-Associated Non-Coding RNAs.
LF368494 - JP 2014500723-A/175997: Polycomb-Associated Non-Coding RNAs.
AK125523 - Homo sapiens cDNA FLJ43535 fis, clone PLACE7002641.
AL357532 - Homo sapiens EST from clone 2108068, full insert.
BC010995 - Homo sapiens unc-45 homolog A (C. elegans), mRNA (cDNA clone IMAGE:3944097), partial cds.
AL357537 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 39700.
JD462049 - Sequence 443073 from Patent EP1572962.
AL357538 - Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 772416.
JD141284 - Sequence 122308 from Patent EP1572962.
JD201644 - Sequence 182668 from Patent EP1572962.
JD375047 - Sequence 356071 from Patent EP1572962.
JD097264 - Sequence 78288 from Patent EP1572962.
JD393016 - Sequence 374040 from Patent EP1572962.
JD367811 - Sequence 348835 from Patent EP1572962.
JD506367 - Sequence 487391 from Patent EP1572962.
JD060961 - Sequence 41985 from Patent EP1572962.
JD195100 - Sequence 176124 from Patent EP1572962.
JD170566 - Sequence 151590 from Patent EP1572962.
JD217391 - Sequence 198415 from Patent EP1572962.
JD111073 - Sequence 92097 from Patent EP1572962.
MA604071 - JP 2018138019-A/175997: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K6F7, NM_018671, NP_061141, Q7L3Y6, Q9H3U1, Q9H3U8, Q9NSE8, Q9NSE9, SMAP1, UN45A_HUMAN
UCSC ID: uc002bqg.3
RefSeq Accession: NM_018671
Protein: Q9H3U1 (aka UN45A_HUMAN)
CCDS: CCDS10367.1, CCDS42082.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_018671.3
exon count: 20CDS single in 3' UTR: no RNA size: 3585
ORF size: 2835CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2973.50frame shift in genome: no % Coverage: 99.08
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.