Gene interactions and pathways from curated databases and text-mining
Nucleic Acids Res 2004, PMID: 14681386

RPG: the Ribosomal Protein Gene database.

Nakao, Akihiro; Yoshihama, Maki; Kenmochi, Naoya

RPG (http://ribosome.miyazaki-med.ac.jp/) is a new database that provides detailed information about ribosomal protein (RP) genes. It contains data from humans and other organisms, including Drosophila melanogaster, Caenorhabditis elegans, Saccharo myces cerevisiae, Methanococcus jannaschii and Escherichia coli. Users can search the database by gene name and organism. Each record includes sequences (genomic, cDNA and amino acid sequences), intron/exon structures, genomic locations and information about orthologs. In addition, users can view and compare the gene structures of the above organisms and make multiple amino acid sequence alignments. RPG also provides information on small nucleolar RNAs (snoRNAs) that are encoded in the introns of RP genes.

Document information provided by NCBI PubMed

Text Mining Data

Dashed line = No text mining data

Manually curated Databases

  • MIPS CORUM 40S ribosomal subunit, cytoplasmic: 40S ribosomal subunit, cytoplasmic complex (FAU-RPS10-RPS11-RPS12-RPS13-RPS14-RPS15-RPS15A-RPS16-RPS17-RPS18-RPS19-RPS2-RPS20-RPS21-RPS23-RPS24-RPS25-RPS26-RPS27-RPS27A-RPS28-RPS29-RPS3-RPS3A-RPS4X-RPS5-RPS6-RPS7-RPS8-RPS9-RPSA-RPS4Y1-RPS4Y2)
  • MIPS CORUM Ribosome, cytoplasmic: Ribosome, cytoplasmic complex (FAU-RPL10-RPL10A-RPL11-RPL12-RPL13-RPL13A-RPL14-RPL15-RPL17-RPL18-RPL18A-RPL19-RPL21-RPL22-RPL23-RPL23A-RPL24-RPL26-RPL27-RPL27A-RPL28-RPL29-RPL3-RPL30-RPL31-RPL32-RPL34-RPL35-RPL35A-RPL36-RPL36A-RPL37-RPL37A-RPL38-RPL39-RPL4-RPL41-RPL5-RPL6-RPL7-RPL7A-RPL8-RPL9-RPLP0-RPLP1-RPLP2-RPS10-RPS11-RPS12-RPS13-RPS14-RPS15-RPS15A-RPS16-RPS17-RPS18-RPS19-RPS2-RPS20-RPS21-RPS23-RPS24-RPS25-RPS26-RPS27-RPS27A-RPS28-RPS29-RPS3-RPS3A-RPS4X-RPS5-RPS6-RPS7-RPS8-RPS9-RPSA-UBA52-RPS4Y1-RPS4Y2)
  • MIPS CORUM 60S ribosomal subunit, cytoplasmic: 60S ribosomal subunit, cytoplasmic complex (RPL10-RPL10A-RPL11-RPL12-RPL13-RPL13A-RPL14-RPL15-RPL17-RPL18-RPL18A-RPL19-RPL21-RPL22-RPL23-RPL23A-RPL24-RPL26-RPL27-RPL27A-RPL28-RPL29-RPL3-RPL30-RPL31-RPL32-RPL34-RPL35-RPL35A-RPL36-RPL36A-RPL37-RPL37A-RPL38-RPL39-RPL4-RPL41-RPL5-RPL6-RPL7-RPL7A-RPL8-RPL9-RPLP0-RPLP1-RPLP2-UBA52)
  • MIPS CORUM 28S ribosomal subunit, mitochondrial: 28S ribosomal subunit, mitochondrial complex (DAP3-MRPS10-MRPS11-MRPS12-MRPS14-MRPS15-MRPS16-MRPS17-MRPS18A-MRPS18B-MRPS18C-MRPS2-MRPS21-MRPS22-MRPS23-MRPS24-MRPS25-MRPS26-MRPS27-MRPS28-MRPS30-MRPS31-MRPS33-MRPS34-MRPS35-MRPS36-MRPS5-MRPS6-MRPS7-MRPS9)
  • MIPS CORUM 55S ribosome, mitochondrial: 55S ribosome, mitochondrial complex (DAP3-LACTB-MRPL1-MRPL10-MRPL11-MRPL12-MRPL13-MRPL14-MRPL15-MRPL16-MRPL17-MRPL18-MRPL19-MRPL2-MRPL20-MRPL21-MRPL22-MRPL23-MRPL24-MRPL27-MRPL28-MRPL3-MRPL30-MRPL32-MRPL33-MRPL34-MRPL35-MRPL36-MRPL37-MRPL38-MRPL39-MRPL4-MRPL40-MRPL41-MRPL42-MRPL43-MRPL44-MRPL45-MRPL46-MRPL47-MRPL48-MRPL49-MRPL50-MRPL51-MRPL52-MRPL53-MRPL54-MRPL55-MRPL9-MRPS10-MRPS11-MRPS12-MRPS14-MRPS15-MRPS16-MRPS17-MRPS18A-MRPS18B-MRPS18C-MRPS2-MRPS21-MRPS22-MRPS23-MRPS24-MRPS25-MRPS26-MRPS27-MRPS28-MRPS30-MRPS31-MRPS33-MRPS34-MRPS35-MRPS36-MRPS5-MRPS6-MRPS7-MRPS9)
  • MIPS CORUM 39S ribosomal subunit, mitochondrial: 39S ribosomal subunit, mitochondrial complex (LACTB-MRPL1-MRPL10-MRPL11-MRPL12-MRPL13-MRPL14-MRPL15-MRPL16-MRPL17-MRPL18-MRPL19-MRPL2-MRPL20-MRPL21-MRPL22-MRPL23-MRPL24-MRPL27-MRPL28-MRPL3-MRPL30-MRPL32-MRPL33-MRPL34-MRPL35-MRPL36-MRPL37-MRPL38-MRPL39-MRPL4-MRPL40-MRPL41-MRPL42-MRPL43-MRPL44-MRPL45-MRPL46-MRPL47-MRPL48-MRPL49-MRPL50-MRPL51-MRPL52-MRPL53-MRPL54-MRPL55-MRPL9)
  • IRef Corum Interaction: Complex of 49 proteins (association, inferred by author)
  • IRef Corum Interaction: Complex of 48 proteins (association, inferred by author)
  • IRef Corum Interaction: Complex of 31 proteins (association, inferred by author)
  • IRef Corum Interaction: Complex of 79 proteins (association, inferred by author)
  • IRef Corum Interaction: Complex of 35 proteins (association, inferred by author)
  • IRef Corum Interaction: Complex of 82 proteins (association, inferred by author)
In total, 6243 gene pairs are associated to this article in curated databases